Transcript: Mouse XR_875218.2

PREDICTED: Mus musculus potassium voltage-gated channel, subfamily Q, member 3 (Kcnq3), transcript variant X2, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Kcnq3 (110862)
Length:
1879
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_875218.2
NBCI Gene record:
Kcnq3 (110862)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_875218.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000044176 GCGCATCCAAACTTTGATCTA pLKO.1 730 3UTR 100% 4.950 6.930 N KCNQ3 n/a
2 TRCN0000069121 CCTGTGCATGTTGGACATCTT pLKO.1 1006 3UTR 100% 4.950 3.465 N Kcnq3 n/a
3 TRCN0000069119 GCTGCTGGAAACCTTTGCTAT pLKO.1 886 3UTR 100% 4.950 3.465 N Kcnq3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_875218.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.