Transcript: Mouse XR_879539.2

PREDICTED: Mus musculus retinoic acid induced 1 (Rai1), transcript variant X4, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Rai1 (19377)
Length:
11525
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_879539.2
NBCI Gene record:
Rai1 (19377)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_879539.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000328266 AGCCTGAAATCCGACTCAAAT pLKO_005 5569 3UTR 100% 13.200 18.480 N Rai1 n/a
2 TRCN0000124987 CTCGCCAAGTACCAACACTAT pLKO.1 1818 3UTR 100% 4.950 6.930 N Rai1 n/a
3 TRCN0000328334 ACCATCTCGTGCTCCTATAAA pLKO_005 6489 3UTR 100% 15.000 12.000 N Rai1 n/a
4 TRCN0000328262 ATAAGAGGCTGCCGTTGTAAT pLKO_005 10354 3UTR 100% 13.200 9.240 N Rai1 n/a
5 TRCN0000014663 GCCTCGTTATATAGTGTATAT pLKO.1 11293 3UTR 100% 13.200 9.240 N RAI1 n/a
6 TRCN0000328336 TCCCTACCTCCTCCACTTATG pLKO_005 1573 3UTR 100% 10.800 7.560 N Rai1 n/a
7 TRCN0000124986 CGAGATGCTTACACCACCATA pLKO.1 5664 3UTR 100% 4.950 3.465 N Rai1 n/a
8 TRCN0000328264 TGAGGCCTAGGTTGCGAAGAA pLKO_005 10472 3UTR 100% 4.950 3.465 N Rai1 n/a
9 TRCN0000124988 GCCAAGTACCAACACTATGGA pLKO.1 1821 3UTR 100% 3.000 2.100 N Rai1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_879539.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.