Transcript: Mouse XR_879609.2

PREDICTED: Mus musculus ADP-ribosylation factor-like 5C (Arl5c), transcript variant X3, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Arl5c (217151)
Length:
1650
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_879609.2
NBCI Gene record:
Arl5c (217151)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_879609.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000380289 GACGAAGGAGATTCCGATAAA pLKO_005 1252 3UTR 100% 13.200 18.480 N Arl5c n/a
2 TRCN0000381435 TCGGCAAGCAAGAGATCTTTG pLKO_005 1211 3UTR 100% 10.800 15.120 N Arl5c n/a
3 TRCN0000381708 ACAGCAGAGATCTCCCAATTT pLKO_005 797 3UTR 100% 13.200 9.240 N Arl5c n/a
4 TRCN0000100781 TGGGACACTTACTACTCTAAT pLKO.1 642 3UTR 100% 13.200 9.240 N Arl5c n/a
5 TRCN0000379424 TTATCGTGGGACTGGACAATG pLKO_005 472 3UTR 100% 10.800 7.560 N Arl5c n/a
6 TRCN0000100780 CCAGTGAGAAACACCAGTCAT pLKO.1 975 3UTR 100% 4.950 3.465 N Arl5c n/a
7 TRCN0000100784 CCTGGGACACTTACTACTCTA pLKO.1 640 3UTR 100% 4.950 3.465 N Arl5c n/a
8 TRCN0000100782 GCCAACAAGCAGGATGTGAAA pLKO.1 764 3UTR 100% 4.950 2.970 N Arl5c n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_879609.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.