Transcript: Mouse XR_879739.2

PREDICTED: Mus musculus oxysterol binding protein-like 7 (Osbpl7), transcript variant X3, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Osbpl7 (71240)
Length:
3906
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_879739.2
NBCI Gene record:
Osbpl7 (71240)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_879739.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000251203 GCTGTCAAGGATGGTAGTTTC pLKO_005 1391 3UTR 100% 10.800 15.120 N Osbpl7 n/a
2 TRCN0000251205 GTGAGCCAGTATGAGTGTAAG pLKO_005 3705 3UTR 100% 10.800 15.120 N Osbpl7 n/a
3 TRCN0000251204 AGGACGGGATCCTACACTATG pLKO_005 616 3UTR 100% 10.800 7.560 N Osbpl7 n/a
4 TRCN0000251207 GACAACATTTACCACCTAAAG pLKO_005 747 3UTR 100% 10.800 7.560 N Osbpl7 n/a
5 TRCN0000251206 TCTGCGAGGAGTTGGAATATA pLKO_005 2035 3UTR 100% 15.000 9.000 N Osbpl7 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_879739.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09404 pDONR223 100% 56.2% None (many diffs) n/a
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