Construct: ORF ccsbBroadEn_09404
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012719.1_s300c1, BRDN0000390486
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- OSBPL7 (114881)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 114881 | OSBPL7 | oxysterol binding protein l... | NM_145798.3 | 99.9% | 100% | 2499T>C |
| 2 | human | 114881 | OSBPL7 | oxysterol binding protein l... | XM_017024122.1 | 94.7% | 94.8% | 2418_2555del;2637T>C |
| 3 | human | 114881 | OSBPL7 | oxysterol binding protein l... | XM_017024123.1 | 94.7% | 94.8% | 2418_2555del;2637T>C |
| 4 | human | 114881 | OSBPL7 | oxysterol binding protein l... | XM_017024124.1 | 92.7% | 92.7% | 201_202ins54;2364_2501del;2583T>C |
| 5 | human | 114881 | OSBPL7 | oxysterol binding protein l... | XR_934362.1 | 85.2% | 1_225del;2395_2396ins44;2571_2572ins136 | |
| 6 | human | 114881 | OSBPL7 | oxysterol binding protein l... | XR_001752423.1 | 72.2% | (many diffs) | |
| 7 | human | 114881 | OSBPL7 | oxysterol binding protein l... | XM_017024125.1 | 45.4% | 45.4% | 0_1ins1314;1104_1241del;1323T>C |
| 8 | mouse | 71240 | Osbpl7 | oxysterol binding protein-l... | NM_001081434.1 | 82.6% | 87.7% | (many diffs) |
| 9 | mouse | 71240 | Osbpl7 | oxysterol binding protein-l... | NM_001310509.1 | 75.9% | 80.2% | (many diffs) |
| 10 | mouse | 71240 | Osbpl7 | oxysterol binding protein-l... | XM_011249264.2 | 72.8% | 77% | (many diffs) |
| 11 | mouse | 71240 | Osbpl7 | oxysterol binding protein-l... | XM_017314766.1 | 71.5% | 75.5% | (many diffs) |
| 12 | mouse | 71240 | Osbpl7 | oxysterol binding protein-l... | XR_879739.2 | 56.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2592
- ORF length:
- 2526
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA CTTCCAAGAG AGGGACCCGC CCTTCCTGCC TGAGAGCGCT CAGTCCTCAA 121 AGCCCAGCAG TGCTCAGCAG GCCTCTGAGC TGTGGGAGGT GGTGGAGGAG CCTCGGGTCA 181 GGCTGGGGAC AGAGGGTGTC ATGCCTGAGA GGCAGGAAGG TCACCTGCTC AAGAAGAGGA 241 AGTGGCCTCT GAAGGGCTGG CACAAGAGAT ACTTTGTGCT CGAGGACGGG ATCCTTCATT 301 ATGCAACAAC CCGGCAAGAC ATCACCAAGG GGAAGCTCCA TGGCTCCATC GATGTCCGGC 361 TGTCGGTCAT GTCCATCAAC AAAAAGGCCC AGCGCATTGA CCTTGACACT GAAGACAACA 421 TCTACCACCT CAAGATCAAA TCCCAGGACC TATTCCAGAG CTGGGTGGCG CAGCTGCGTG 481 CCCACCGCCT AGCCCACCGC CTGGACATGC CCCGTGGCTC ACTGCCCAGT ACTGCTCACC 541 GGAAGGTTCC TGGTGCCCAG CTTCCAACAG CAGCTACTGC CTCAGCCCTA CCTGGGCTTG 601 GACCGCGGGA GAAAGTGTCT TCCTGGCTGA GGGACAGTGA TGGGCTGGAC CGCTGCTCTC 661 ATGAGCTCTC TGAGTGTCAG GGGAAGCTCC AGGAACTACA CAGGCTCCTC CAGAGCCTGG 721 AGTCCCTGCA CCGAATCCCC TCAGCCCCTG TTATCCCCAC ACACCAGGCC TCAGTGACAA 781 CCGAAAGACC CAAGAAGGGG AAACGGACAA GCCGCATGTG GTGCACCCAG AGCTTTGCCA 841 AGGATGACAC CATTGGACGG GTTGGTCGTC TCCATGGCTC TGTTCCCAAC CTGTCTCGCT 901 ACCTGGAGTC TCGGGACTCC TCGGGCACCC GTGGGCTGCC ACCCACAGAC TATGCCCACC 961 TGCAGCGCAG CTTCTGGGCC CTGGCCCAGA AGGTGCACAG CTCCCTCAGC AGCGTCCTGG 1021 CCGCCCTCAC CATGGAACGG GACCAACTGA GGGACATGCA CCAGGGCTCA GAGTTGTCAA 1081 GAATGGGGGT CTCTGAGGCC TCCACTGGCC AGAGGCGCCT CCACTCACTG TCCACCTCCT 1141 CCGACACCAC GGCGGACTCT TTCAGCTCCC TCAACCCTGA GGAGCAAGAA GCTCTGTACA 1201 TGAAGGGGCG CGAGCTCACC CCCCAGCTAT CGCAGACCAG CATCCTGTCC CTTGCTGATT 1261 CCCACACGGA GTTCTTCGAT GCCTGCGAGG TTCTCCTCTC CGCCAGCTCT TCTGAGAATG 1321 AGGGCTCAGA GGAGGAGGAG TCCTGTACCA GTGAAATCAC CACCAGCCTG TCTGAGGAGA 1381 TGCTGGACCT CAGGGGAGCT GAGCGCTGTC AGAAAGGGGG GTGTGTTCCA GGGAGACCCA 1441 TGGGGCCACC CCGCCGTCGC TGCCTGCCGG CGGCCAGCGG GCCTGGGGCT GACGTGAGCC 1501 TGTGGAACAT TCTGCGCAAC AACATCGGCA AAGACCTGTC CAAGGTGTCA ATGCCTGTGC 1561 AGCTCAACGA GCCGCTCAAC ACTCTGCAGC GGCTCTGCGA GGAGCTGGAG TACAGCAGCC 1621 TCCTGGACCA GGCCAGCCGC ATCGCCGACC CCTGCGAGCG CATGGTGTAC ATCGCAGCCT 1681 TTGCTGTCTC GGCCTACTCC TCCACATACC ACCGAGCCGG CTGCAAGCCC TTCAACCCTG 1741 TCCTGGGGGA GACCTACGAG TGTGAGCGGC CTGACCGAGG CTTCCGCTTC ATCAGTGAGC 1801 AGGTCTCCCA CCACCCCCCT ATCTCGGCCT GCCATGCAGA GTCTGAGAAC TTCGCCTTCT 1861 GGCAAGATAT GAAGTGGAAG AACAAGTTCT GGGGCAAATC CCTGGAGATT GTGCCTGTGG 1921 GAACAGTCAA CGTCAGCCTG CCCAGGTTTG GGGACCACTT TGAGTGGAAC AAGGTGACAT 1981 CCTGCATTCA CAATGTCCTG AGTGGTCAGC GCTGGATCGA GCACTATGGG GAGGTGCTCA 2041 TCCGAAACAC ACAGGACAGC TCCTGCCACT GCAAGATCAC CTTCTGCAAG GCCAAGTACT 2101 GGAGTTCCAA TGTCCACGAG GTGCAGGGCG CTGTGCTCAG TCGGAGTGGC CGTGTCCTCC 2161 ACCGACTCTT TGGGAAGTGG CACGAGGGGC TGTACCGGGG ACCCACGCCA GGTGGCCAGT 2221 GCATCTGGAA ACCCAACTCA ATGCCCCCCG ACCATGAGCG AAACTTCGGC TTCACCCAGT 2281 TTGCCTTGGA GCTGAATGAG CTGACAGCAG AGCTGAAACG GTCGCTGCCT TCCACCGACA 2341 CGAGACTCCG GCCAGACCAG AGGTACCTGG AGGAGGGGAA CATACAGGCC GCTGAGGCCC 2401 AGAAGAGAAG GATCGAGCAG CTGCAGCGAG ACAGGCGCAA AGTCATGGAG GAAAACAACA 2461 TCGTACACCA GGCTCGCTTC TTCAGGCGGC AGACGGATAG CAGCGGGAAA GAGTGGTGGG 2521 TGACCAACAA TACCTACTGG AGGCTGCGGG CCGAGCCAGG CTACGGGAAC ATGGATGGGG 2581 CCGTGCTCTG GTACCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 2641 caatttgttg caacgaac