Transcript: Mouse XR_880154.1

PREDICTED: Mus musculus RIKEN cDNA A430060F13 gene (A430060F13Rik), misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
A430060F13Rik (100039739)
Length:
1160
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_880154.1
NBCI Gene record:
A430060F13Rik (100039739)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_880154.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000202072 CCAGAACAGCCTTCCATTGTT pLKO.1 406 3UTR 100% 5.625 3.938 N Gm11545 n/a
2 TRCN0000190284 CCATAATCTCTGTCCACACTA pLKO.1 716 3UTR 100% 4.950 2.970 N Gm11545 n/a
3 TRCN0000201659 CCATCATGTCTCTTGTCCTTT pLKO.1 641 3UTR 100% 4.950 2.475 Y Gm11545 n/a
4 TRCN0000308285 TGAAGCACTTCTGTCCCAATG pLKO_005 338 3UTR 100% 6.000 3.600 N RHOB n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_880154.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.