Transcript: Human XR_929767.1

PREDICTED: Homo sapiens suppressor of cancer cell invasion (SCAI), transcript variant X1, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SCAI (286205)
Length:
2030
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_929767.1
NBCI Gene record:
SCAI (286205)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_929767.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000424545 AGATTATACTCACCGATTTAA pLKO_005 758 3UTR 100% 15.000 21.000 N SCAI n/a
2 TRCN0000161344 GCGGATCCTGTAATGGTATTA pLKO.1 837 3UTR 100% 13.200 18.480 N SCAI n/a
3 TRCN0000158541 CGTCTAATAGTGTTGCGTATA pLKO.1 1432 3UTR 100% 10.800 15.120 N SCAI n/a
4 TRCN0000162372 CACGTTCAATAGATCAGGCAT pLKO.1 1833 3UTR 100% 2.640 3.696 N SCAI n/a
5 TRCN0000138330 CGGATGTTACAAGCTCTGGAA pLKO.1 1023 3UTR 100% 2.640 3.696 N SCAI n/a
6 TRCN0000419763 ATCATTGTGGATTCGTCTAAT pLKO_005 1419 3UTR 100% 13.200 9.240 N SCAI n/a
7 TRCN0000160620 CCAGATGAATAAACCAGGAAT pLKO.1 1067 3UTR 100% 4.950 3.465 N SCAI n/a
8 TRCN0000162404 CCCAGATGAATAAACCAGGAA pLKO.1 1066 3UTR 100% 2.640 1.848 N SCAI n/a
9 TRCN0000159902 GTTAAGAGATTTGCCACAATA pLKO.1 353 3UTR 100% 13.200 7.920 N SCAI n/a
10 TRCN0000159470 CACAAGTATCTGCTCTACAAA pLKO.1 1128 3UTR 100% 5.625 3.375 N SCAI n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_929767.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.