Transcript: Human XR_930489.3

PREDICTED: Homo sapiens UPF2 regulator of nonsense mediated mRNA decay (UPF2), transcript variant X2, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
UPF2 (26019)
Length:
3001
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_930489.3
NBCI Gene record:
UPF2 (26019)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_930489.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000338828 CGATTAGGAATGGAGGTTAAT pLKO_005 2711 3UTR 100% 13.200 18.480 N UPF2 n/a
2 TRCN0000219987 GGTATCAAGTCCCGATGATTT pLKO.1 1638 3UTR 100% 13.200 18.480 N UPF2 n/a
3 TRCN0000157152 GCGAGATACGTCACAATGGTA pLKO.1 2375 3UTR 100% 3.000 4.200 N UPF2 n/a
4 TRCN0000338826 GCGAGATACGTCACAATGGTA pLKO_005 2375 3UTR 100% 3.000 4.200 N UPF2 n/a
5 TRCN0000151546 GACTTCTCTCATCACCATATT pLKO.1 2231 3UTR 100% 13.200 9.240 N UPF2 n/a
6 TRCN0000150629 GAACTTGAGTTGGAGAATCTA pLKO.1 1660 3UTR 100% 5.625 3.938 N UPF2 n/a
7 TRCN0000151381 GACTTGTACCAAGGAAAGTAA pLKO.1 1067 3UTR 100% 5.625 3.938 N UPF2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_930489.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.