Transcript: Human XR_934473.2

PREDICTED: Homo sapiens coatomer protein complex subunit zeta 2 (COPZ2), transcript variant X3, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
COPZ2 (51226)
Length:
958
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_934473.2
NBCI Gene record:
COPZ2 (51226)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_934473.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000381636 GGGTATGACCATCGTCTACAA pLKO_005 316 3UTR 100% 4.950 6.930 N COPZ2 n/a
2 TRCN0000065146 TCTGCCAAGGAACAAATTAAA pLKO.1 659 3UTR 100% 15.000 10.500 N COPZ2 n/a
3 TRCN0000382335 AGTCTCTGAACCACATGTTAA pLKO_005 423 3UTR 100% 13.200 9.240 N COPZ2 n/a
4 TRCN0000382289 AGTGATCCAGAAGGTGAATTT pLKO_005 472 3UTR 100% 13.200 9.240 N COPZ2 n/a
5 TRCN0000065147 GAGTCTCTGAACCACATGTTA pLKO.1 422 3UTR 100% 5.625 3.938 N COPZ2 n/a
6 TRCN0000065143 CCAAGTATTATGATGACACAT pLKO.1 210 3UTR 100% 4.950 3.465 N COPZ2 n/a
7 TRCN0000379476 GAACCTTCCCTCTACACCATC pLKO_005 146 3UTR 100% 4.050 2.835 N COPZ2 n/a
8 TRCN0000065144 GCAAGTGATCCAGAAGGTGAA pLKO.1 469 3UTR 100% 4.050 2.835 N COPZ2 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_934473.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.