Transcript: Human XR_940367.3

PREDICTED: Homo sapiens solute carrier family 25 member 26 (SLC25A26), transcript variant X7, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SLC25A26 (115286)
Length:
1123
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_940367.3
NBCI Gene record:
SLC25A26 (115286)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_940367.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000044154 CAAGGGTTGTATCGAGGCTAT pLKO.1 506 3UTR 100% 4.050 5.670 N SLC25A26 n/a
2 TRCN0000044153 GACAAGAATTACGCTGGCAAA pLKO.1 636 3UTR 100% 4.050 5.670 N SLC25A26 n/a
3 TRCN0000430314 GGAATATATGCTGGCGTTCCT pLKO_005 236 3UTR 100% 2.640 2.112 N SLC25A26 n/a
4 TRCN0000419332 TTTCCTCTGGATACCATTAAA pLKO_005 167 3UTR 100% 15.000 10.500 N SLC25A26 n/a
5 TRCN0000412986 GCTGATTCATCTTCATATTTG pLKO_005 332 3UTR 100% 13.200 9.240 N SLC25A26 n/a
6 TRCN0000044155 CACAGGTATCTGCTTCTACAA pLKO.1 441 3UTR 100% 4.950 3.465 N SLC25A26 n/a
7 TRCN0000422412 CCATCAGTCTGGGAGGTTTCA pLKO_005 764 3UTR 100% 4.950 3.465 N SLC25A26 n/a
8 TRCN0000044156 GCTGTTGGAAGTTGGCAGAAA pLKO.1 819 3UTR 100% 4.950 3.465 N SLC25A26 n/a
9 TRCN0000044157 GTTTCCCTTATGGGAGTCCTT pLKO.1 568 3UTR 100% 2.640 1.848 N SLC25A26 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_940367.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.