Transcript: Human XR_941650.3

PREDICTED: Homo sapiens zinc finger MYM-type containing 2 (ZMYM2), transcript variant X3, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ZMYM2 (7750)
Length:
7484
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_941650.3
NBCI Gene record:
ZMYM2 (7750)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_941650.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000118855 CGGGCGAGATATGAACTTAAT pLKO.1 754 3UTR 100% 13.200 18.480 N ZMYM2 n/a
2 TRCN0000118856 GCGAAACTCTTTACCTCAATA pLKO.1 1900 3UTR 100% 13.200 18.480 N ZMYM2 n/a
3 TRCN0000433124 TAACTATGGGTTAGCTCATTT pLKO_005 3490 3UTR 100% 13.200 18.480 N ZMYM2 n/a
4 TRCN0000431218 TGCAGAAGCAATCGGGATAAA pLKO_005 4394 3UTR 100% 13.200 18.480 N ZMYM2 n/a
5 TRCN0000071325 GCATAGTTACATATTGCGAAT pLKO.1 2163 3UTR 100% 4.050 5.670 N Zmym2 n/a
6 TRCN0000071326 GCTGAGCTTAACTATGGGTTA pLKO.1 3482 3UTR 100% 4.050 5.670 N Zmym2 n/a
7 TRCN0000427992 ACTTGTTCAGATGACTATAAG pLKO_005 2132 3UTR 100% 13.200 10.560 N ZMYM2 n/a
8 TRCN0000431245 TTGCAGTGTCTTTCGGAATTT pLKO_005 4811 3UTR 100% 13.200 10.560 N ZMYM2 n/a
9 TRCN0000118854 GCCAAGTGATATTCAGTTGAA pLKO.1 2029 3UTR 100% 4.950 3.960 N ZMYM2 n/a
10 TRCN0000420141 ATACTTCCAGATGGGTCAATA pLKO_005 3805 3UTR 100% 13.200 9.240 N ZMYM2 n/a
11 TRCN0000431264 CTTTAGTGTCTAGATCTAATA pLKO_005 258 3UTR 100% 13.200 9.240 N ZMYM2 n/a
12 TRCN0000118852 GCTGGGTATTACCATGTAAAT pLKO.1 4507 3UTR 100% 13.200 9.240 N ZMYM2 n/a
13 TRCN0000071327 GCTCCAAAGAAACTCTGTGTT pLKO.1 1238 3UTR 100% 4.950 3.465 N Zmym2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_941650.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.