Transcript: Human XR_945604.3

PREDICTED: Homo sapiens ATP binding cassette subfamily C member 2 (ABCC2), transcript variant X1, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ABCC2 (1244)
Length:
4417
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_945604.3
NBCI Gene record:
ABCC2 (1244)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_945604.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000059303 CGTGTATAAATCCAGGACCAA pLKO.1 393 3UTR 100% 2.640 3.696 N ABCC2 n/a
2 TRCN0000059304 CCTGGTGGATAGCAACAATAT pLKO.1 1941 3UTR 100% 13.200 9.240 N ABCC2 n/a
3 TRCN0000289639 CCTGGTGGATAGCAACAATAT pLKO_005 1941 3UTR 100% 13.200 9.240 N ABCC2 n/a
4 TRCN0000059306 GCCGGTGGTCAGATTATCATT pLKO.1 4244 3UTR 100% 5.625 3.938 N ABCC2 n/a
5 TRCN0000307093 GCCGGTGGTCAGATTATCATT pLKO_005 4244 3UTR 100% 5.625 3.938 N ABCC2 n/a
6 TRCN0000059307 CCATAGCTTCATTCCTGAGTA pLKO.1 830 3UTR 100% 4.950 3.465 N ABCC2 n/a
7 TRCN0000289640 CCATAGCTTCATTCCTGAGTA pLKO_005 830 3UTR 100% 4.950 3.465 N ABCC2 n/a
8 TRCN0000059305 GCATCTGAAGTCCCTGAGAAA pLKO.1 3009 3UTR 100% 4.950 3.465 N ABCC2 n/a
9 TRCN0000289638 GCATCTGAAGTCCCTGAGAAA pLKO_005 3009 3UTR 100% 4.950 3.465 N ABCC2 n/a
10 TRCN0000308184 GTGCTTGTAATCCCAATTAAT pLKO_005 1654 3UTR 100% 15.000 9.000 N ABCC2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_945604.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.