Transcript: Human XR_949082.3

PREDICTED: Homo sapiens uncharacterized LOC105379271 (LOC105379271), transcript variant X4, ncRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
LOC105379271 (105379271)
Length:
1425
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_949082.3
NBCI Gene record:
LOC105379271 (105379271)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_949082.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000159185 GAGCAACAAGAAACGAATAAA pLKO.1 116 3UTR 100% 15.000 7.500 Y TEKT4P2 n/a
2 TRCN0000159736 GCAACAAGAAACGAATAAATC pLKO.1 118 3UTR 100% 13.200 6.600 Y TEKT4P2 n/a
3 TRCN0000161734 CCAAGAGCAACAAGAAACGAA pLKO.1 112 3UTR 100% 3.000 1.500 Y TEKT4P2 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_949082.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.