Reference

Functions

HarmonyMatrix()

Main Harmony interface

RunHarmony()

Harmony single cell integration

Data

cell_lines

List of metadata table and scaled PCs matrix

cell_lines_small

Same as cell_lines but smaller (300 cells).

cell_lines_small_sce

Same as cell_lines_small but as SingleCellExperiment object. Expression matrices filled in with dummy values.

cell_lines_small_seurat_v2

Same as cell_lines_small but as Seurat Version 2 object. Expression matrices filled in with dummy values.

cell_lines_small_seurat_v3

Same as cell_lines_small but as Seurat Version 3 object. Expression matrices filled in with dummy values.