Nucleotide Global Alignment

Description

• Query: TRCN0000465441
• Subject: NR_148401.1
• Aligned Length: 3453
• Identities: 2178
• Gaps: 1191

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GGCACCTGAAGCCCTTCGGGGCAGAGGAGGGCGGGGACTCGGGGCGGCTCTCAGCATCCGCCTGGAGCTCGTGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CGCTGTGTTTCCGTGCTGTGGAGTTGCCTGGTCCGCTTCCTCCCCGCGAATAAGAATAAAAGATTCTGGAGGAG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TTGGAGAAGAGTGTATTCAGCCCCCAAACCACGAGATCAACAAAGAAATGCACAATTTTGAGGAAGAGTTAACT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TGTCCCATATGTTATAGTATTTTTGAAGATCCTCGTGTACTGCCATGCTCTCATACATTTTGTAGAAATTGTTT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GGAAAACATTCTTCAGGCATCTGGTAACTTTTATATATGGAGACCTTTACGAATTCCACTCAAGTGCCCTAATT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GCAGAAGTATTACTGAAATTGCTCCAACTGGCATTGAATCTTTACCTGTTAATTTTGCACTAAGGGCTATTATT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GAAAAGTACCAGCAAGAAGACCATCCAGATATTGTCACCTGCCCTGAACATTACAGGCAACCATTAAATGTTTA  518

Query    1  --------------------------------------------------------ATG---AGACTAAAGAT-  14
                                                                    |||   |..|||.|||| 
Sbjct  519  CTGTCTATTAGATAAAAAATTAGTTTGTGGTCATTGCCTTACCATAGGTCAACATCATGGTCATCCTATAGATG  592

Query   15  ATCT---------CT-TTTAAAAGAACCAAAG------CATCAAGAATT--------AGTAAGCTGTGTG----  60
            |.||         || |||.|||||   ||||      |.||||.||.|        |||    ||..||    
Sbjct  593  ACCTTCAAAGTGCCTATTTGAAAGA---AAAGGACACTCCTCAAAAACTGCTTGAACAGT----TGACTGACAC  659

Query   61  -GGCTGGAC------TAC------TGCTGAAGAGCTGTA-----------TTCATGTAGTG---ATGATCACCA  107
             ..||||||      |||      |..||||.|||||.|           .||||...|.|   |||||  |||
Sbjct  660  ACACTGGACAGATCTTACCCATCTTATTGAAAAGCTGAAAGAACAAAAATCTCATTCTGAGAAAATGAT--CCA  731

Query  108  ----GATAGTGAAGTGGAACTTGTTAACCAG-----------------TGAAAC-----AACTCAAATAGTAAA  155
                ||||      .||||..||||..||||                 |||.||     |||..|||.|..|||
Sbjct  732  AGGCGATA------AGGAAGCTGTTCTCCAGTATTTTAAGGAGCTTAATGATACATTAGAACAGAAAAAAAAAA  799

Query  156  GCTTCCTGA----------TGAT-------ATTTACCCTATT------GATTTTCACTGGTTTCCAAAAAGTTT  206
            |.|||||.|          ||||       ||.||    |||      ||.|.| ||     ||||.|||  ||
Sbjct  800  GTTTCCTAACGGCTCTCTGTGATGTTGGCAATCTA----ATTAATCAAGAATAT-AC-----TCCACAAA--TT  861

Query  207  GGGTGTAAAGAA------ACAAACCCAG-GCAGAAAGCTT-------TGTC-CTCACAAGTTCT------GATG  259
            |     ||||||      | ||..|.|| |||| .|||||       ||.| ||.||||..|||      ||.|
Sbjct  862  G-----AAAGAATGAAGGA-AATACGAGAGCAG-CAGCTTGAATTAATGGCACTGACAATATCTTTACAAGAAG  928

Query  260  ---------GTAAATTTCATCTGATTTCCAAGTT----------------AGGAAGAG----TGGAAAAAAG--  302
                     .||||||||.|...|     |||||                |.|.|.||    ||.||.||||  
Sbjct  929  AGTCTCCACTTAAATTTCTTGAAA-----AAGTTGATGATGTACGCCAGCATGTACAGATCTTGAAACAAAGAC  997

Query  303  ----TGTAGAAGCTCA--CTGTGGA-----------GCAGTA--------CTTGCAGGAAGATGGAATTATGAA  351
                |...||.|.|||  |.||.||           | ||||        .|||.|.|||||       |||.|
Sbjct  998  CACTTCCTGAGGTTCAACCCGTTGAAATTTATCCTCG-AGTAAGCAAAATATTGAAAGAAGA-------ATGGA  1063

Query  352  G--GAACAGCATTAGTTACAGTTGGAGAAGAT---GGAC-------------AAATAAAAATTTGGTCAAAGAC  407
            |  ||||||         .|.|||||.|| ||   |.||             ||||.|||||||...||||.| 
Sbjct 1064  GCAGAACAG---------AAATTGGACAA-ATTAAGAACGTTCTCATTCCCAAAATGAAAATTTCTCCAAAAA-  1126

Query  408  TGGGATGCTTAGATCAACTTTAGCTCAGCAAGGAACACCAGTGTATTCAGTAGCGTGGGGCCCTGATTCAGAAA  481
              |||||      |||..||   |...||..|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1127  --GGATG------TCATGTT---CCTGGCCTGGAACACCAGTGTATTCAGTAGCGTGGGGCCCTGATTCAGAAA  1189

Query  482  AGGTTCTTTATACAGCAGGCAAGCAGCTAATCATTAAACCTCTTCAACCAAATGCTAAAGTTTTGCAGTGGAAA  555
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190  AGGTTCTTTATACAGCAGGCAAGCAGCTAATCATTAAACCTCTTCAACCAAATGCTAAAGTTTTGCAGTGGAAA  1263

Query  556  GCTCATGATGGCATTATTTTAAAAGTAGATTGGAACTCGGTCAATGATCTTATTTTATCTGCTGGTGAAGACTG  629
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1264  GCTCATGATGGCATTATTTTAAAAGTAGATTGGAACTCGGTCAATGATCTTATTTTATCTGCTGGTGAAGACTG  1337

Query  630  TAAATATAAGGTATGGGATAGTTACGGCCGCCCACTGTACAATTCACAACCTCATGAGCATCCCATTACTTCAG  703
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1338  TAAATATAAGGTATGGGATAGTTACGGCCGCCCACTGTACAATTCACAACCTCATGAGCATCCCATTACTTCAG  1411

Query  704  TTGCCTGGGCTCCAGATGGAGAATTATTTGCTGTTGGATCGTTTCATACTTTACGCTTGTGTGATAAAACTGGG  777
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1412  TTGCCTGGGCTCCAGATGGAGAATTATTTGCTGTTGGATCGTTTCATACTTTACGCTTGTGTGATAAAACTGGG  1485

Query  778  TGGTCATATGCATTAGAAAAACCCAACACTGGCAGCATATTTAATATTGCATGGTCTATCGATGGCACTCAGAT  851
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1486  TGGTCATATGCATTAGAAAAACCCAACACTGGCAGCATATTTAATATTGCATGGTCTATCGATGGCACTCAGAT  1559

Query  852  TGCTGGAGCCTGTGGAAATGGACATGTCGTTTTTGCACATGTGGTGGAACAACATTGGGAGTGGAAAAATTTTC  925
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560  TGCTGGAGCCTGTGGAAATGGACATGTCGTTTTTGCACATGTGGTGGAACAACATTGGGAGTGGAAAAATTTTC  1633

Query  926  AAGTAACATTAACGAAAAGAAGAGCCATGCAGGTTCGTAATGTTCTTAATGATGCAGTGGATTTACTGGAATTC  999
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1634  AAGTAACATTAACGAAAAGAAGAGCCATGCAGGTTCGTAATGTTCTTAATGATGCAGTGGATTTACTGGAATTC  1707

Query 1000  CGTGATAGAGTCATTAAAGCATCTTTGAACTATGCACACTTAGTTGTTTCAACGTCTCTTCAATGTTACGTGTT  1073
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1708  CGTGATAGAGTCATTAAAGCATCTTTGAACTATGCACACTTAGTTGTTTCAACGTCTCTTCAATGTTACGTGTT  1781

Query 1074  CTCCACGAAGAACTGGAACACACCAATTATATTTGATCTCAAAGAAGGAACTGTTAGTTTGATTCTGCAGGCAG  1147
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1782  CTCCACGAAGAACTGGAACACACCAATTATATTTGATCTCAAAGAAGGAACTGTTAGTTTGATTCTGCAGGCAG  1855

Query 1148  AAAGACATTTTCTTCTTGTAGATGGTAGTAGTATCTATTTATATTCATATGAAGGGCGCTTTATTTCATCTCCA  1221
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1856  AAAGACATTTTCTTCTTGTAGATGGTAGTAGTATCTATTTATATTCATATGAAGGGCGCTTTATTTCATCTCCA  1929

Query 1222  AAATTTCCTGGAATGAGAACAGATATTCTGAATGCACAGACTGTGTCTTTGAGTAATGATACCATAGCAATAAG  1295
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1930  AAATTTCCTGGAATGAGAACAGATATTCTGAATGCACAGACTGTGTCTTTGAGTAATGATACCATAGCAATAAG  2003

Query 1296  AGACAAAGCTGATGAAAAAATAATCTTCCTCTTTGAGGCATCAACCGGAAAGCCGTTAGGTGATGGAAAGTTTC  1369
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2004  AGACAAAGCTGATGAAAAAATAATCTTCCTCTTTGAGGCATCAACCGGAAAGCCGTTAGGTGATGGAAAGTTTC  2077

Query 1370  TTTCTCATAAGAATGAAATCTTGGAAATTGCTCTGGATCAAAAAGGACTTACCAATGATAGAAAAATTGCTTTC  1443
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2078  TTTCTCATAAGAATGAAATCTTGGAAATTGCTCTGGATCAAAAAGGACTTACCAATGATAGAAAAATTGCTTTC  2151

Query 1444  ATTGATAAAAATAGAGATCTCTGTATCACTTCTGTGAAACGATTTGGGAAGGAAGAACAAATTATCAAGCTTGG  1517
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2152  ATTGATAAAAATAGAGATCTCTGTATCACTTCTGTGAAACGATTTGGGAAGGAAGAACAAATTATCAAGCTTGG  2225

Query 1518  AACAATGGTGCATACTTTGGCATGGAACGATACATGCAATATCCTTTGTGGACTTCAAGATACTCGATTTATAG  1591
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2226  AACAATGGTGCATACTTTGGCATGGAACGATACATGCAATATCCTTTGTGGACTTCAAGATACTCGATTTATAG  2299

Query 1592  TGTGGTATTACCCCAATACAGTTTATGTGGACAGAGACATTTTGCCTAAAACATTATATGAAAGGGATGCAAGT  1665
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2300  TGTGGTATTACCCCAATACAGTTTATGTGGACAGAGACATTTTGCCTAAAACATTATATGAAAGGGATGCAAGT  2373

Query 1666  GAATTTAGTAAAAATCCCCATATTGTGAGTTTTGTTGGAAATCAAGTAACTATTAGAAGAGCTGATGGCTCCCT  1739
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2374  GAATTTAGTAAAAATCCCCATATTGTGAGTTTTGTTGGAAATCAAGTAACTATTAGAAGAGCTGATGGCTCCCT  2447

Query 1740  GGTTCACATCAGCATAACACCATATCCTGCTATTCTCCATGAATATGTAAGCAGTTCAAAATGGGAAGATGCTG  1813
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2448  GGTTCACATCAGCATAACACCATATCCTGCTATTCTCCATGAATATGTAAGCAGTTCAAAATGGGAAGATGCTG  2521

Query 1814  TGAGACTTTGTCGCTTTGTTAAGGAGCAAACCATGTGGGCTTGTCTAGCTGCTATGGCAGTTGCTAATCGAGAT  1887
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2522  TGAGACTTTGTCGCTTTGTTAAGGAGCAAACCATGTGGGCTTGTCTAGCTGCTATGGCAGTTGCTAATCGAGAT  2595

Query 1888  ATGACTACTGCAGAAATAGCCTATGCAGCAATTGGTGAAATTGATAAGGTTCAGTACATCAATTCTATAAAAAA  1961
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2596  ATGACTACTGCAGAAATAGCCTATGCAGCAATTGGTGAAATTGATAAGGTTCAGTACATCAATTCTATAAAAAA  2669

Query 1962  TCTTCCATCTAAAGAATCAAAAATGGCCCACATACTACTGTTTAGTGGGAACATACAGGAGGCTGAAATAGTAC  2035
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2670  TCTTCCATCTAAAGAATCAAAAATGGCCCACATACTACTGTTTAGTGGGAACATACAGGAGGCTGAAATAGTAC  2743

Query 2036  TTCTTCAGGCTGGCCTTGTTTATCAAGCAATCCAGATCAATATTAATCTCTACAACTGGGAAAGGGCACTGGAA  2109
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2744  TTCTTCAGGCTGGCCTTGTTTATCAAGCAATCCAGATCAATATTAATCTCTACAACTGGGAAAGGGCACTGGAA  2817

Query 2110  TTGGCTGTAAAATACAAAACACATGTTGATACAGTTCTTGCTTACCGTCAAAAGTTTTTGGAGACATTTGGTAA  2183
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2818  TTGGCTGTAAAATACAAAACACATGTTGATACAGTTCTTGCTTACCGTCAAAAGTTTTTGGAGACATTTGGTAA  2891

Query 2184  ACAGGAAACTAATAAACGATACTTGCATTATGCAGAAGGTCTCCAAATAGATTGGGAGAAAATCAAAGCCAAAA  2257
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2892  ACAGGAAACTAATAAACGATACTTGCATTATGCAGAAGGTCTCCAAATAGATTGGGAGAAAATCAAAGCCAAAA  2965

Query 2258  TTGAGATGGAAATTACAAAAGAAAGAGAGCAATCATCAAGCAGCCAATCCAGCAAGAGTATAGGTTTAAAGCCC  2331
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2966  TTGAGATGGAAATTACAAAAGAAAGAGAGCAATCATCAAGCAGCCAATCCAGCAAGAGTATAGGTTTAAAGCCC  3039

Query 2332  --------------------------------------------------------------------------  2331
                                                                                      
Sbjct 3040  TAAATGCCATGCGTATCTTTAAGAAATTTTATCTTTTGAAACACGTTCTGATTAACCAAGGGGCGTGTCACAGA  3113

Query 2332  --------------------------------------------------------------------------  2331
                                                                                      
Sbjct 3114  ACAGGAAACTGATACAATGACACTTGTTTCTTAAGAGAAGCTGATTGAATCCTGTAGCACATTACTGCACAATT  3187

Query 2332  --------------------------------------------------------------------------  2331
                                                                                      
Sbjct 3188  AATGGCTTTAAACGAGTTACAAGTCGTAAGTTCTTATGTTTTGGATCATGTTGTGGAATGTATTCCAAATGAAA  3261

Query 2332  --------------------------------------------------------------------------  2331
                                                                                      
Sbjct 3262  AATGGAGGAGAAAGTGCACAACATCATATGCTTCATGGTATGGCATATACATGTCAATTATTTTTACATATAAC  3335

Query 2332  -------------------------------------------------  2331
                                                             
Sbjct 3336  TGTGATGAATGATACAATTAAAAGCTATACTACAAAAAAAAAAAAAAAA  3384