Nucleotide Global Alignment
Description
- Query:
- TRCN0000466223
- Subject:
- XR_001781537.1
- Aligned Length:
- 4181
- Identities:
- 1451
- Gaps:
- 2558
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTCACCCCCTTAGCATATGTTAGTTACACATTTTAATGGGTTTCACTGTTACATTTTCATACGTGTGTGTAATG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TACTTGATCACCCATATTCCCCATAACTCTGGTTCCATCGTTCCCATAGCCTCCTTGTCTCCTTACATTGTCAT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ATCGGTTTTTGTTTTGTTTTTTGTTTTGTTTTTGTGACCCACAGAGTTTAACTAGGTTTGCAAATAGGATCATG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AATGAGGGTTAATTTACAGTATCACTAGCACCTTATCAATGGCTATACCATCAAAGAAAATGGCTTTCCTTCTC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CCCAGCAACCATTAGCTGCATGTATAGTCTCAACAATAGAGGACCAGAGGGAGGGAAGAGGTGATGTGGTGTGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GCCCTCCATATCTCAGGATTGCATGTTCACATATCCAATATGTGATAATCACTATATTTTATGCTGATAATCAC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TATATCCCTAGAGTTTATGGGTTTGTTTGTTTGTTTGTTTGTTTTTAAGACAAACTTTCACTCTATAGCCTAGG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CTGGCCTGAAACTCACTATGAAGCCAGAGATGACCTTGAACTTCTGATCCTCTCACCTCCATCCCTGAGTGCTG 592
Query 1 -------------------------------------------ATGGCTTGCCTCCATGAGACCCGAACACCCT 31
|||||.|||||||||||.|||||||||||||
Sbjct 593 GGACTGCTGGGCCCGCTGCTCAGCACACCTGGCTCCAGAGGCCATGGCCTGCCTCCATGAAACCCGAACACCCT 666
Query 32 CTCCTTCCTTTGGGGGCTTTGTGTCTACCCTAAGTGAGGCATCCATGCGCAAGCTGGACCCAGACACTTCTGAC 105
|.||||||||||||||||||||||||||.|||||||||||.||.|||||.||||||||.|||||||||||.|||
Sbjct 667 CCCCTTCCTTTGGGGGCTTTGTGTCTACTCTAAGTGAGGCTTCTATGCGAAAGCTGGATCCAGACACTTCAGAC 740
Query 106 TGCACTCCCGAGAAGGACCTGACGCCTACCCAGTGTGTACTTCGAGATGTGGTACCCCTTGGTGGGCAGGGTGG 179
|||||.||||||||.|||||||||||.|||||.|||||||||||||||||.||.||.||.||||||||||||||
Sbjct 741 TGCACCCCCGAGAAAGACCTGACGCCCACCCAATGTGTACTTCGAGATGTTGTGCCTCTCGGTGGGCAGGGTGG 814
Query 180 GGGAGGGCCCAGCCCCTCCCCAGGTGGAGAGCCGCCCCCTGAGCCTTTTGCCAACAGTGTCCTGCAGCTACATG 253
.|||||.||||||||||||||||||||||||||.|||||.||||||||||||||.||||||||.||||||||||
Sbjct 815 AGGAGGACCCAGCCCCTCCCCAGGTGGAGAGCCTCCCCCAGAGCCTTTTGCCAATAGTGTCCTCCAGCTACATG 888
Query 254 AGCAGGATGCAGGGGGCCCAGGGGGAGCAGCTGGGTCACCTGAGAGTCGGGCATCCAGAGTTCGAGCTGACGAG 327
||||||||.||||.||.|||||||||||..|||||||||||||||||||.|||||.||||||||||||||.|||
Sbjct 889 AGCAGGATACAGGTGGGCCAGGGGGAGCCACTGGGTCACCTGAGAGTCGAGCATCTAGAGTTCGAGCTGATGAG 962
Query 328 GTGCGACTGCAGTGCCAGAGTGGCAGTGGCTTCCTTGAGGGCCTCTTTGGCTGCCTGCGCCCTGTCTGGACCAT 401
||.||.||||||||||||||||||||||||||||||||.||.||.||||||||||||||||||||||||||.||
Sbjct 963 GTACGTCTGCAGTGCCAGAGTGGCAGTGGCTTCCTTGAAGGTCTTTTTGGCTGCCTGCGCCCTGTCTGGACAAT 1036
Query 402 GATTGGCAAAGCCTACTCCACTGAGCACAAGCAGCAGCAGGAAGACCTTTGGGAGGTCCCCTTTGAGGAAATCC 475
|||||||||||||||||||||.||.||||||||.||||||||||||||||||||.|||||||||||||||||||
Sbjct 1037 GATTGGCAAAGCCTACTCCACAGAACACAAGCAACAGCAGGAAGACCTTTGGGAAGTCCCCTTTGAGGAAATCC 1110
Query 476 TGGACCTGCAGTGGGTGGGCTCAGGGGCCCAGGGTGCTGTCTTCCTGGGGCGCTTCCACGGGGAGGAGGTGGCT 549
||||||||||||||||.|||||||||||.|||||||||||.||||||||.||||||||||||||||||||.|||
Sbjct 1111 TGGACCTGCAGTGGGTAGGCTCAGGGGCTCAGGGTGCTGTTTTCCTGGGACGCTTCCACGGGGAGGAGGTAGCT 1184
Query 550 GTGAAGAAGGTGCGAGACCTCAAAGAAACCGACATCAAGCA-CTTGCGAAAGCTGAAGCACCCCAACATCATCA 622
|||||||||||.|||||.|||||.||.||.||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1185 GTGAAGAAGGTTCGAGATCTCAAGGAGACTGACATCAAGCATCTT-CGAAAGCTGAAGCACCCCAACATCATCA 1257
Query 623 CTTTCAAGGGTGTGTGCACCCAGGCTCCCTGCTACTGCATCCTCATGGAGTTCTGCGCCCAGGGCCAGCTGTAT 696
|||||||||||||.|||||.|||||.|||||||||||||||||.|||||.||||||||.||.||.|||||.|||
Sbjct 1258 CTTTCAAGGGTGTTTGCACACAGGCCCCCTGCTACTGCATCCTTATGGAATTCTGCGCTCAAGGACAGCTATAT 1331
Query 697 GAGGTACTGCGGGCTGGCCGCCCTGTCACCCCCTCCTTACTGGTTGACTGGTCCATGGGCATCGCTGGTGGCAT 770
|||||.||..|.||.|||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||
Sbjct 1332 GAGGTGCTCAGAGCCGGCCGCCCTGTCACCCCCTCCTTGCTGGTTGACTGGTCCATGGGCATCGCTGGTGGCAT 1405
Query 771 GAACTACCTGCACCTGCACAAGATTATCCACAGGGATCTCAAGTCACCCAACATGCTAATCACCTACGACGATG 844
|||.|||||||||||||||||||||||||||||.||.||.|||||||||||||||||||||||.||||||||||
Sbjct 1406 GAATTACCTGCACCTGCACAAGATTATCCACAGAGACCTGAAGTCACCCAACATGCTAATCACATACGACGATG 1479
Query 845 TGGTGAAGATCTCAGATTTTGGCACTTCCAAGGAGCTGAGTGACAAGAGCACCAAGATGTCCTTTGCAGGGACA 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||
Sbjct 1480 TGGTGAAGATCTCAGATTTTGGCACTTCCAAGGAGCTGAGTGACAAGAGCACCAAGATGTCCTTTGCAGGAACA 1553
Query 919 GTAGCCTGGATGGCCCCTGAGGTGATCCGCAATGAACCTGTGTCTGAGAAGGTCGACATCTGGTCCTTTGGCGT 992
||||||||||||||.|||||.||||||.|.|||||||||||||||||||||||.|||||||||||||||||.||
Sbjct 1554 GTAGCCTGGATGGCTCCTGAAGTGATCAGAAATGAACCTGTGTCTGAGAAGGTTGACATCTGGTCCTTTGGGGT 1627
Query 993 GGTGCTATGGGAACTGCTGACTGGTGAGATCCCCTACAAAGACGTAGATTCCTCAGCCATTATCTGGGGTGTGG 1066
|||||||||||||||.||||||||.|||||.|||||||||||.|||||||||||||||||.|||||||||||||
Sbjct 1628 GGTGCTATGGGAACTACTGACTGGAGAGATTCCCTACAAAGATGTAGATTCCTCAGCCATCATCTGGGGTGTGG 1701
Query 1067 GAAGCAACAGTCTCCATCTGCCCGTGCCCTCCAGTTGCCCAGATGGTTTCAAGATCCTGCTTCGCCAGTGCTGG 1140
||||||||||||||||.|||||.||.||||||||.||||||||||||||.||.||.||.|||||||||||||||
Sbjct 1702 GAAGCAACAGTCTCCACCTGCCTGTACCCTCCAGCTGCCCAGATGGTTTTAAAATTCTACTTCGCCAGTGCTGG 1775
Query 1141 AATAGCAAACCACGAAATCGCCCATCATTCCGACAGATCCTGCTGCATCTGGACATTGCCTCAGCTGATGTACT 1214
||.||||||||||||||||||||||||||||||||||||.|||||||.||||||||.|||||.||||||||.||
Sbjct 1776 AACAGCAAACCACGAAATCGCCCATCATTCCGACAGATCTTGCTGCACCTGGACATCGCCTCCGCTGATGTGCT 1849
Query 1215 CTCCACACCCCAGGAGACTTACTTTAAGTCCCAGGCAGAGTGGCGGGAA-----------GAAGTAAAACTGCA 1277
|||.||||||||||||||||||||||||||||| ||.|||| |.||| ||
Sbjct 1850 CTCTACACCCCAGGAGACTTACTTTAAGTCCCA---------GCAGGAACCATTCATCATGGAGT-------CA 1907
Query 1278 CTTTGAAAAG------ATTAAGTCAGAAGGGA--CCTGTCTGCACCGCCT-AGAAGAGGAACTGGTGATGAGGA 1342
|...|||.|| .||..|.||.|||.|| ||.| || ||||| | .|||.|..|.||
Sbjct 1908 CAGAGAACAGGGTCCATTTCGGCCACAAGCGAACCCAG-CT-CACCG--TGGGAAAATCATCT----------- 1966
Query 1343 GGAGGGAGGAGC----TCAGACACGCCCTGGACATCAGGGAGCACTATGAAAGGAAGCTGGAGAGAGCCAACAA 1412
|| |||||||.|||||||||||||||||||||||||||.|||||.||||||||||||||||
Sbjct 1967 ----------GCCCTTTCAGACATGCCCTGGACATCAGGGAGCACTATGAACGGAAGTTGGAGAGAGCCAACAA 2030
Query 1413 CCTGTATATGGAACTTAATGCCCTCATGTTGCAGCTGGAACTCAAGGAGAGGGAGCTGCTCAGGCGAGAGCAAG 1486
||||||.||||||||.||||||||||||.||||.||.||||||||.||||||||..||||||||||||||||.|
Sbjct 2031 CCTGTACATGGAACTGAATGCCCTCATGCTGCAACTAGAACTCAAAGAGAGGGAATTGCTCAGGCGAGAGCAGG 2104
Query 1487 CTTTAGAGCGGAGGTGCCCAGGCCTGCTGAAGCCACACCCTTCCCGGGGCCCCCAGCTTCCCTCCCTCCAT-GA 1559
|||||||..||.||||.||.||.||.||.|||.||||||||||.||||||| .|||.||| ||
Sbjct 2105 CTTTAGAAAGGCGGTGTCCTGGTCTACTAAAGTCACACCCTTCTCGGGGCC------------TCCTACATGGA 2166
Query 1560 AAGCCACTCGTATTCCTTGTA------CATAGAGAAA---TATTT---ATATAAATT----------------- 1604
|| |||| .||.| |||..||||| .|..| |.|.|||.|
Sbjct 2167 AA--CACT--------ATGGAGAAGCTCATCAAGAAAAGGAACGTGCCACAGAAACTGTCGCCCCACAGCAAAA 2230
Query 1605 ------ATATATATATATACATA--------TATATATA-TATATGC-GCCACATAATCAACAGAAAGATGGGG 1662
|||| |.|..|.|||.| ||..||.| ||.|||| |||..| ||...|.|||||
Sbjct 2231 GGCCAGATAT-TCTCAAGACAGAGTCGTTGCTACCTAAACTAGATGCAGCCCTA--------AGTGGGGTGGGG 2295
Query 1663 C--------TGTCCCAGCCGTAAG---------TCAGGCTCGAGGGAGACTG-------ATCCCC--------- 1703
| ||||| |||| ||| .||.||.||||.|.| |..|||
Sbjct 2296 CTTCCTGGGTGTCC------TAAGGGCCCCCCTTCA-CCTGGAAGGAGTCGGCGTGGCAAGACCCGTCACCGAA 2362
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 2363 AGGCCAGTGCCAAGGGCAGCTGTGGAGACCTGCCTGGGCTTCGTGCAGCTTTGCCACCCCATGAGCCTGGAGGA 2436
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 2437 CTAGGAAGCCCAGGGGGCCTAGGAGTGGGCCCTTCAGCTTGGGATGCTTGCCCCCCTGCTCTCCGTGGACTCCA 2510
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 2511 CCATGACCTTCTACTCCGAAAGATGTCATCATCATCCCCAGACCTGCTATCAGCAGCGCTGGGAGCCCGAGGCC 2584
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 2585 GAGGGGCTACAGGGGGAGCTCGGGATCCTGGCTCACCACCTCCACCCCAGGGCGATACTCCTCCAAGTGAGGGA 2658
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 2659 TCAGCTCCTGGTTCCACCAGCCCAGATTCGCCTGGGGGAGCTAAAGGGGAACCCCCTCCACCAGTAGGGCCTGG 2732
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 2733 AGAAGGTGTGGGGCTGCTGGGAACTGGAAGGGAAGGGACTGCAGGCCGGGGAGGAAACCGGGCTGGGTCCCAGC 2806
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 2807 ACTTGACCCCCGCTGCGCTGCTGTACAGGGCTGCTGTGACTCGAAGTCAGGTAAAGTATGGGGATGTTCTTCTA 2880
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 2881 CCCCACACCAAATTAAAATCCTTTAATCTCCTCATGGGTCCAAGTGCTAACTATACCCCAACCCCACTCAACTA 2954
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 2955 TGTATCCTTGCCCAATTCTTAATGACTTACCATTTTTTGACTGGTTTACTTACACCTACCCACACCCATCTCTA 3028
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 3029 CTGTAGAAACGTGGTATCTCATCTGAAGAAGAAGAAGGAGAGGTAGACAGTGAAGTAGAGCTACCCCCAAGTCA 3102
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 3103 AAGGTGGCCTCAGGGCCCGAACATGCGTCAGTCACTATCTACATTCAGCTCAGAGAACCCATCAGATGTGGAGG 3176
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 3177 AAGGTACAGCTAGTGAGCCTTCCCCAAGTGGCACACCAGAAGTTGGCAGTACCAACACTGATGAGCGACCAGAT 3250
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 3251 GAACGATCTGATGACATGTGCTCACAGGGCTCAGAAATTCCACTGGACCTACCTACTTCAGAGGTGGTCCCTGA 3324
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 3325 ACGTGAAGCCAGCTCCTTGCCCATGCAACACCAGGATGGCCAGGGCCCCAATCCTGAAGACTCAGACTGTGACA 3398
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 3399 GCACTGAATTGGACAACTCCAACAGCATTGATGCCTTGCGGCCCCCAGCCTCCCTTCCTCCATGAAAGACACTC 3472
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 3473 TTATTCCTTGTACATAGAGAAATATTTATATAAATAATATATATGCGCCACATAATCAACAGATAGATGGGGCT 3546
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 3547 TTCTTAGCCTTAAGCCAGGCTTGAGAGTGAACGACGCCCCTGACCAATTACCGAATAAGTTCTGGGGACACTGG 3620
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 3621 CAGCTGTGGAAATGAATGACTCCGAGTACTACCCTAGAGCTATAAAGAAAGGAAGCTGGCCCCTTCTTGCTTCA 3694
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 3695 CCCCATTCCTTATGTTGAACAAGCAAGTAGGCAATAGAAAAGCCAGGCTTGTCTCTATACTGTCTATCCCTGAA 3768
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 3769 CACTGGAGGGGCAGGTAGAGGATTCACTTAAAACTGCACTTTTATTTTCCGTTTACTGTTTACACATTTTGCAC 3842
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 3843 TTGGGAGGAGGGAAAGAAACTAAGGCTGGGTCATCCCTCTGAGGTTTCTCAGGTGGCAATGTAACTCATTTCTT 3916
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 3917 TGTTCCTGTTTCTCTGCCCAAACCCTGGCTTTGGGCCAGACGACTAACAGCATGTGATGGCTCAGGCTGAAGAA 3990
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 3991 CTGGGGTGCTGTTAGTCCCCACTGTTATCTTGGTGCCTGGTAGGGGTGGGGACTGTCATATTGTAACCCCTGTG 4064
Query 1704 ------------------------------------- 1703
Sbjct 4065 AACAACCTTGAAATATAACCACTCCATGCAGGCCCAA 4101
