Nucleotide Global Alignment

Description

• Query: TRCN0000466913
• Subject: XM_011245919.1
• Aligned Length: 1326
• Identities: 876
• Gaps: 360

Alignment

Query    1  ATGCTGGCGTCTCAAGGAGTTCTCCTGCATCCTTATGGCGTGCCTATG-ATTGTACCG-------GCAGCTCCT  66
                                                         ||| |||||   |       ||||||   
Sbjct    1  ---------------------------------------------ATGAATTGT---GAAAGAGAGCAGCT---  23

Query   67  TACCTTCCTGGACTGATTCAGGGTAATCAGGAAGCAGCCGCTGCCCCTGACACAATGGCTCAGCCTTACGCTTC  140
                      ||       .|||||||||||||||||||||.||||||||||||||||||||||||||.||.||
Sbjct   24  ----------GA-------GGGGTAATCAGGAAGCAGCCGCCGCCCCTGACACAATGGCTCAGCCTTATGCCTC  80

Query  141  GGCCCAGTTTGCTCCCCCGCAGAACGGTATCCCCGCGGAATACACGGCCCCTCATCCCCACCCCGCGCCAGAGT  214
            .||.|||||.||.||.||.|||||.||.|||||.||.||||||||||||||||||||.||.|||||||||||||
Sbjct   81  AGCGCAGTTCGCACCACCCCAGAATGGCATCCCTGCAGAATACACGGCCCCTCATCCTCATCCCGCGCCAGAGT  154

Query  215  ACACAGGCCAGACCACGGTTCCCGAGCACACATTAAACCTGTACCCTCCCGCCCAGACGCACTCCGAGCAGAGC  288
            ||||.|||||||||||.||.||.||.|||||||||||||||||.|||||..|.|||||||||||.|||||||| 
Sbjct  155  ACACCGGCCAGACCACTGTCCCTGACCACACATTAAACCTGTATCCTCCTACACAGACGCACTCGGAGCAGAG-  227

Query  289  CCGGCGGACACGAGCGCTCAGACCGTCTCTGGCACCGCCACACAGACAGATGACGCAGCACCGACGGATGGCCA  362
              .||.|||||.||.||.|||||||||||.|||||||||||||||||||||||.|||||.|||||.||.|||||
Sbjct  228  --TGCTGACACCAGTGCGCAGACCGTCTCCGGCACCGCCACACAGACAGATGATGCAGCCCCGACCGACGGCCA  299

Query  363  GCCCCAGACACAACCTTCTGAAAACACGGAAAACAAGTCTCAGCCCAAGCGGCTGCATGTCTCCAATATCCCCT  436
            |||||||||||||||||||||||||||.||||.||||||.||||||||||||||||||||.|||||.|||||.|
Sbjct  300  GCCCCAGACACAACCTTCTGAAAACACAGAAAGCAAGTCCCAGCCCAAGCGGCTGCATGTGTCCAACATCCCTT  373

Query  437  TCAGGTTCCGGGATCCGGACCTCAGACAAATGTTTGGTCAATTTGGTAAAATCTTAGATGTTGAAATTATTTTT  510
            ||.|||||||||||||.||||||.||||||||||||||||||||||||||||.|||||||||||||||||||||
Sbjct  374  TCCGGTTCCGGGATCCAGACCTCCGACAAATGTTTGGTCAATTTGGTAAAATATTAGATGTTGAAATTATTTTT  447

Query  511  AATGAGCGAGGCTCAAAGGGATTTGGTTTCGTAACTTTCGAAAATAGTGCCGATGCGGACAGGGCGAGGGAGAA  584
            ||||||||||||||.|||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||
Sbjct  448  AATGAGCGAGGCTCCAAGGGATTTGGTTTCGTAACTTTCGAAAATAGTGCGGATGCGGACAGGGCGAGGGAGAA  521

Query  585  ATTACACGGCACCGTGGTAGAGGGCCGTAAAATCGAGGTAAATAATGCCACAGCACGTGTAATGACAAATAAAA  658
            |||.|||||.|||||||||||||||||||||||||||||.||||||||.||||||||.||.|||||||||||.|
Sbjct  522  ATTGCACGGTACCGTGGTAGAGGGCCGTAAAATCGAGGTTAATAATGCGACAGCACGCGTGATGACAAATAAGA  595

Query  659  AGACCGTCAACCCTTATACAAATGGCTGGAAATTGAATCCAGTTGTGGGTGCAGTCTACAGTCCCGAATTCTAT  732
            ||||.||||||||.||.||.||||||||||||||.||||||||||||||.||.||||||||.|||||.||||||
Sbjct  596  AGACTGTCAACCCCTACACCAATGGCTGGAAATTAAATCCAGTTGTGGGCGCGGTCTACAGCCCCGACTTCTAT  669

Query  733  GCAGGCACGGTCCTGTTGTGCCAGGCCAACCAGGAGGGATCTTCCATGTACAGTGCCCCCAGTTCACTTGTATA  806
            ||||                                                                      
Sbjct  670  GCAG----------------------------------------------------------------------  673

Query  807  TACTTCTGCAATGCCAGGCTTCCCGTATCCAGCAGCCACCGCCGCGGCCGCCTACCGAGGGGCGCACCTGCGAG  880
                       ||||.||||||||.|||||.||.|||||.||.||.||.||.|||||||||||.|||||.||||
Sbjct  674  -----------TGCCTGGCTTCCCATATCCGGCCGCCACTGCTGCAGCTGCATACCGAGGGGCTCACCTTCGAG  736

Query  881  GCCGCGGTCGCACCGTGTACAACACCTTCAGGGCCGCGGCGCCCCCGCCCCCGATCCCGGCCTACGGCGGAGTA  954
            ||||.|||||||||||||||||||||||||||||.||.||||||||||||||.|||||||||||.|||||.||.
Sbjct  737  GCCGTGGTCGCACCGTGTACAACACCTTCAGGGCTGCAGCGCCCCCGCCCCCAATCCCGGCCTATGGCGGTGTT  810

Query  955  GTGTATCAAGAGCCTG---TGTATGGCAATAAATTGCTGCAG--------GGTGGTTATGCTGCATACCGCTAC  1017
            ||.||.||.||   ||   |.|||||           |||||        ||||||||||||||.||||||||.
Sbjct  811  GTTTACCAGGA---TGGATTTTATGG-----------TGCAGACATTTATGGTGGTTATGCTGCGTACCGCTAT  870

Query 1018  GCCCAGCCTACCCCTGCCACTGCCGCTGCCTACAGTGACAGAAATCAGTTCGTCTTCGTTGCAGCAGATGAAAT  1091
            ||||||||.|||||||||||||||||||||||||||||                                    
Sbjct  871  GCCCAGCCCACCCCTGCCACTGCCGCTGCCTACAGTGA------------------------------------  908

Query 1092  TTCTTGTAACACCTCTGCAGTTACGGACGAGTTTATGCTGCCGACCCCTACCACCACGCACTTGCTCCAGCCCC  1165
                             ||||||||||||||||||||||||||||||||||||||||.||||||||||||||||
Sbjct  909  -----------------CAGTTACGGACGAGTTTATGCTGCCGACCCCTACCACCACACACTTGCTCCAGCCCC  965

Query 1166  CACCTACGGCGTTGGTGCCA------------------------------------------------------  1185
            ||||||||||||||||||||                                                      
Sbjct  966  CACCTACGGCGTTGGTGCCATGAATGCTTTTGCGCCCTTGACCGATGCCAAGACTAGGAGCCATGCTGATGATG  1039

Query 1186  --------------------------------------------------------------------  1185
                                                                                
Sbjct 1040  TGGGTCTCGTTCTTTCTTCATTGCAGGCTAGTATATACCGAGGGGGATACAACCGTTTTGCTCCATAT  1107