Construct: ORF TRCN0000466913

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008162.1_s317c1
Derived from:
ccsbBroadEn_03449
DNA Barcode:
CTCAGGTTCATGAAGTTACTCGTT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RBFOX1 (54715)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000466913
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54715 RBFOX1 RNA binding fox-1 homolog 1 NM_145893.3 100% 100%
2 human 54715 RBFOX1 RNA binding fox-1 homolog 1 XM_011522547.2 97.4% 97.9% (many diffs)
3 human 54715 RBFOX1 RNA binding fox-1 homolog 1 XM_017023332.1 93.2% 89.9% (many diffs)
4 human 54715 RBFOX1 RNA binding fox-1 homolog 1 NM_145892.3 92.1% 88% 1055_1056ins53;1133_1176del
5 human 54715 RBFOX1 RNA binding fox-1 homolog 1 NM_001364800.2 90.7% 89.2% (many diffs)
6 human 54715 RBFOX1 RNA binding fox-1 homolog 1 XM_017023336.1 90.7% 89.2% (many diffs)
7 human 54715 RBFOX1 RNA binding fox-1 homolog 1 XM_011522548.2 90.6% 90.8% (many diffs)
8 human 54715 RBFOX1 RNA binding fox-1 homolog 1 XM_017023328.2 89.4% 82.1% (many diffs)
9 human 54715 RBFOX1 RNA binding fox-1 homolog 1 XM_017023330.1 89.3% 83.5% (many diffs)
10 human 54715 RBFOX1 RNA binding fox-1 homolog 1 XM_005255387.4 88.9% 88.9% 1186_1332del
11 human 54715 RBFOX1 RNA binding fox-1 homolog 1 XM_024450315.1 87.3% 87.8% (many diffs)
12 human 54715 RBFOX1 RNA binding fox-1 homolog 1 XM_017023337.1 86.6% 83% (many diffs)
13 human 54715 RBFOX1 RNA binding fox-1 homolog 1 NM_145891.3 86.6% 83% 1055_1056ins53;1133_1254del
14 human 54715 RBFOX1 RNA binding fox-1 homolog 1 XM_005255386.4 85.3% 81.9% (many diffs)
15 human 54715 RBFOX1 RNA binding fox-1 homolog 1 XM_011522546.2 84.3% 81.2% (many diffs)
16 human 54715 RBFOX1 RNA binding fox-1 homolog 1 XM_017023341.2 84% 82.2% (many diffs)
17 human 54715 RBFOX1 RNA binding fox-1 homolog 1 XM_017023342.1 84% 82.2% (many diffs)
18 human 54715 RBFOX1 RNA binding fox-1 homolog 1 XM_017023323.2 83.2% 80.2% (many diffs)
19 human 54715 RBFOX1 RNA binding fox-1 homolog 1 XM_024450309.1 83.1% 75.7% (many diffs)
20 human 54715 RBFOX1 RNA binding fox-1 homolog 1 XM_005255390.4 83% 81.3% (many diffs)
21 human 54715 RBFOX1 RNA binding fox-1 homolog 1 XM_005255391.4 83% 81.3% (many diffs)
22 human 54715 RBFOX1 RNA binding fox-1 homolog 1 XM_024450316.1 83% 81.5% (many diffs)
23 human 54715 RBFOX1 RNA binding fox-1 homolog 1 XM_024450311.1 82.9% 77% (many diffs)
24 human 54715 RBFOX1 RNA binding fox-1 homolog 1 XM_017023320.2 82.2% 75.5% (many diffs)
25 human 54715 RBFOX1 RNA binding fox-1 homolog 1 XM_024450310.1 82.1% 75.1% (many diffs)
26 human 54715 RBFOX1 RNA binding fox-1 homolog 1 XM_017023321.2 82.1% 76.6% (many diffs)
27 human 54715 RBFOX1 RNA binding fox-1 homolog 1 XM_024450312.1 82% 76.3% (many diffs)
28 human 54715 RBFOX1 RNA binding fox-1 homolog 1 XM_024450306.1 81.9% 81.9% 526_527ins93;1093_1239del
29 human 54715 RBFOX1 RNA binding fox-1 homolog 1 XM_017023326.2 80.9% 79.5% (many diffs)
30 human 54715 RBFOX1 RNA binding fox-1 homolog 1 XM_017023327.1 80.8% 74.3% (many diffs)
31 human 54715 RBFOX1 RNA binding fox-1 homolog 1 NM_001308117.1 80.4% 70.3% (many diffs)
32 human 54715 RBFOX1 RNA binding fox-1 homolog 1 XM_005255394.4 80.4% 76.6% 736_737ins81;974_975ins53;1052_1173del
33 human 54715 RBFOX1 RNA binding fox-1 homolog 1 XM_017023322.2 80% 75% (many diffs)
34 human 54715 RBFOX1 RNA binding fox-1 homolog 1 XM_017023331.2 79.9% 79.9% 0_1ins120;1066_1212del
35 human 54715 RBFOX1 RNA binding fox-1 homolog 1 NM_001142334.1 78.4% 73.5% (many diffs)
36 human 54715 RBFOX1 RNA binding fox-1 homolog 1 NM_018723.4 78.4% 73.5% (many diffs)
37 human 54715 RBFOX1 RNA binding fox-1 homolog 1 XM_017023333.1 78.4% 73.5% (many diffs)
38 human 54715 RBFOX1 RNA binding fox-1 homolog 1 XM_017023324.2 77.8% 68.3% (many diffs)
39 human 54715 RBFOX1 RNA binding fox-1 homolog 1 XM_024450304.1 77.7% 69.3% (many diffs)
40 human 54715 RBFOX1 RNA binding fox-1 homolog 1 XM_017023334.1 74.7% 68% (many diffs)
41 human 54715 RBFOX1 RNA binding fox-1 homolog 1 XM_024450305.1 74.3% 69.1% (many diffs)
42 human 54715 RBFOX1 RNA binding fox-1 homolog 1 XM_024450307.1 74% 72.6% (many diffs)
43 human 54715 RBFOX1 RNA binding fox-1 homolog 1 XM_024450308.1 73.9% 67.4% (many diffs)
44 human 54715 RBFOX1 RNA binding fox-1 homolog 1 NM_001142333.2 72.3% 67.2% (many diffs)
45 human 54715 RBFOX1 RNA binding fox-1 homolog 1 XM_017023338.1 72.3% 67.2% (many diffs)
46 human 54715 RBFOX1 RNA binding fox-1 homolog 1 XM_017023329.2 72% 62.5% (many diffs)
47 human 54715 RBFOX1 RNA binding fox-1 homolog 1 XM_017023340.1 71.4% 66.5% (many diffs)
48 human 54715 RBFOX1 RNA binding fox-1 homolog 1 XM_024450314.1 67.6% 57.6% (many diffs)
49 human 54715 RBFOX1 RNA binding fox-1 homolog 1 XM_024450313.1 65.1% 56.8% (many diffs)
50 human 54715 RBFOX1 RNA binding fox-1 homolog 1 XM_024450303.1 62.9% 58.4% (many diffs)
51 human 54715 RBFOX1 RNA binding fox-1 homolog 1 XM_017023318.2 61.6% 57.2% (many diffs)
52 human 54715 RBFOX1 RNA binding fox-1 homolog 1 XM_017023319.2 53.8% 47.1% (many diffs)
53 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... XM_006522189.3 91% 97.4% (many diffs)
54 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... XM_011245915.2 85.9% 89.5% (many diffs)
55 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... XM_017316997.1 85.7% 89.5% (many diffs)
56 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... XM_011245916.1 83.6% 87.5% (many diffs)
57 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... XM_017317002.1 83.6% 87.5% (many diffs)
58 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... XM_006522176.3 81% 86.7% (many diffs)
59 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... XM_011245918.2 80.1% 66.8% (many diffs)
60 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... XM_017317006.1 80% 86% (many diffs)
61 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... XM_011245917.2 79.8% 66.5% (many diffs)
62 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... XM_017316990.1 79.5% 83.2% (many diffs)
63 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... XM_017317005.1 79.5% 83.2% (many diffs)
64 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... NM_183188.2 78.5% 81% (many diffs)
65 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... XM_006522175.3 78.5% 81.5% (many diffs)
66 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... XM_011245920.1 78.1% 78.3% (many diffs)
67 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... XM_017317007.1 78.1% 78.3% (many diffs)
68 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... XM_006522177.3 77.5% 81.5% (many diffs)
69 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... XM_006522181.3 76.8% 81.3% (many diffs)
70 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... XM_017316994.1 76.6% 76.3% (many diffs)
71 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... XM_011245914.2 76.6% 76.4% (many diffs)
72 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... XM_006522184.3 76.5% 79.1% (many diffs)
73 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... XM_006522155.3 76.4% 79.7% (many diffs)
74 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... XM_006522178.2 76.4% 79.7% (many diffs)
75 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... XM_006522179.2 76.4% 79.7% (many diffs)
76 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... XM_011245922.2 76.4% 79.7% (many diffs)
77 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... XM_006522173.3 76% 75.2% (many diffs)
78 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... XM_017316989.1 74.5% 74.5% (many diffs)
79 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... XM_017317000.1 74.5% 74.5% (many diffs)
80 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... XM_011245907.2 74.5% 78% (many diffs)
81 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... XM_017316991.1 74.5% 78% (many diffs)
82 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... XM_017316992.1 74.1% 73.9% (many diffs)
83 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... XM_011245910.2 73.9% 74% (many diffs)
84 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... XM_006522185.3 73.1% 78.3% (many diffs)
85 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... XM_006522186.3 73.1% 78.3% (many diffs)
86 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... XM_011245909.2 72.8% 76% (many diffs)
87 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... NM_021477.5 72% 72.2% (many diffs)
88 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... XM_006522188.1 72% 72.2% (many diffs)
89 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... XM_011245911.2 72% 72.2% (many diffs)
90 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... XM_017316998.1 72% 72.2% (many diffs)
91 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... XM_017316996.1 71.2% 76.5% (many diffs)
92 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... XM_017317004.1 71% 72.9% (many diffs)
93 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... XM_017316993.1 70.7% 73.7% (many diffs)
94 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... XM_011245912.2 70.5% 73.7% (many diffs)
95 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... XM_011245913.2 69.5% 69.7% (many diffs)
96 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... XM_017316988.1 68.6% 72% (many diffs)
97 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... XM_006522192.3 68.6% 70.7% (many diffs)
98 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... XM_006522190.1 68.3% 68.3% (many diffs)
99 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... XM_017316999.1 68.2% 67.8% (many diffs)
100 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... XM_011245919.1 66% 66.1% (many diffs)
101 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... XM_017317003.1 66% 66.1% (many diffs)
102 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... XM_017317008.1 31.3% 19.5% (many diffs)
103 mouse 268859 Rbfox1 RNA binding protein, fox-1 ... XM_017317009.1 31.3% 19.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1254
ORF length:
1185
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gctggcgtct caaggagttc tcctgcatcc ttatggcgtg cctatgattg
121taccggcagc tccttacctt cctggactga ttcagggtaa tcaggaagca gccgctgccc
181ctgacacaat ggctcagcct tacgcttcgg cccagtttgc tcccccgcag aacggtatcc
241ccgcggaata cacggcccct catccccacc ccgcgccaga gtacacaggc cagaccacgg
301ttcccgagca cacattaaac ctgtaccctc ccgcccagac gcactccgag cagagcccgg
361cggacacgag cgctcagacc gtctctggca ccgccacaca gacagatgac gcagcaccga
421cggatggcca gccccagaca caaccttctg aaaacacgga aaacaagtct cagcccaagc
481ggctgcatgt ctccaatatc cccttcaggt tccgggatcc ggacctcaga caaatgtttg
541gtcaatttgg taaaatctta gatgttgaaa ttatttttaa tgagcgaggc tcaaagggat
601ttggtttcgt aactttcgaa aatagtgccg atgcggacag ggcgagggag aaattacacg
661gcaccgtggt agagggccgt aaaatcgagg taaataatgc cacagcacgt gtaatgacaa
721ataaaaagac cgtcaaccct tatacaaatg gctggaaatt gaatccagtt gtgggtgcag
781tctacagtcc cgaattctat gcaggcacgg tcctgttgtg ccaggccaac caggagggat
841cttccatgta cagtgccccc agttcacttg tatatacttc tgcaatgcca ggcttcccgt
901atccagcagc caccgccgcg gccgcctacc gaggggcgca cctgcgaggc cgcggtcgca
961ccgtgtacaa caccttcagg gccgcggcgc ccccgccccc gaTCCCGGCC TACGGCGGAG
1021TAGTGTATCA AGAGCCTGTG TATGGCAATA AATTGCTGCA GGGTGGTTAT GCTGCATACC
1081GCTACGCCCA GCCTACCCCT GCCACTGCCG CTGCCTACAG TGACAGAAAT CAGTTCGTCT
1141TCGTTGCAGC AGATGAAATT TCTTGTAACA CCTCTGCAGT TACGGACGAG TTTATGCTGC
1201CGACCCCTAC CACCACGCAC TTGCTCCAGC CCCCACCTAC GGCGTTGGTG CCATTGCCAA
1261CTTTCTTGTA CAAAGTGGTT GATATCGGTA AGCCTATCCC TAACCCTCTC CTCGGTCTCG
1321ATTCTACGTA GTAATGAACT AGTCCGTAAC TTGAAAGTAT TTCGATTTCT TGGCTTTATA
1381TATCTTGTGG AAAGGACGAC TCAGGTTCAT GAAGTTACTC GTTACGCGTT AAGTCgacaa
1441tcaacctctg gattacaaaa tttgtgaaag att

Download FASTA (ORF) (Full)