Nucleotide Global Alignment
Description
- Query:
- TRCN0000467530
- Subject:
- XR_376343.3
- Aligned Length:
- 3038
- Identities:
- 569
- Gaps:
- 2431
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTAAATTTATTTAAATGAGTTTTTAAAAACATAGCATTTCGTTAAATCTACCACCTCCTTTATGCATGCCTTTA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGAGAATACTTTTCTCACTATAACCTCATTATTAAGCTTTCTTAATGCTCTCAGACTAGAATGAAAGATTACAA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GTAGCAGAAAAAATGGGTTATTCAGACAGTAATTTAATATTGACATAGGATCCAACTGAGATTCAAGTTCTAAT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 ACTTTAGTAAATACTACAAGGTCCTAGGTATCTATTCTTTCTATAGACCACCAAGCCTACAATATAACATGGAG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGTGTGCTCAGAAAAATATTAGTTACTTGAATAAAAGAATAAGTGGAAGAATGGATGTATGTGAAATTCTGTTT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ATCCTTCCCCCAAAATTCACCAATCTCTCTCTGACAAATACCCTGGTATTGAGCTAGACAATTGGAATATAAAT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AGCTCAGTTTCCCTGTAAGCATACAATACAGAACAAGTACAACTCTCAGCCTTCTTTCTCTGGAAGGTGTGGTT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TGTCTGCAGGAACCAACCTTTCCAGGTTCTCATCTGTGATTTTGGAAACAGAGAAGGGACTGCTGTTCTGCCCA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GTTTGGCTCCTGAACTCAACTGACTCCAGAAAGTCCGGCCTCTGCTCTGGCTCCCTAGAGCCCTCCATCCTTGT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TTCATTCCAACTGTTCCAGCCCAGAATCAACAAGTAGTGGAGGCGATTCCTCAATGGAGAAAGACCACAGGGAA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GAGGGGTGCCGCTGCTCCCTTAGGATAAAAACAGCCCTGGTCTAACCCTCTGGTATCCCAGCAGCTGGTTCAAC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TGGAAACCTCAGATTACTCTAGTTCTGGCCAAAAACTGGTTTGGCAGCTCTAGGGGAATGTTTCTGGCTCACTG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 ACCCTCACAGCAGGTGCTGGCAATTTTGCAAAAGAAAGAGAAAAGGGGGAAATGGGTTTGGAGGGTGGACTGAA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GGAACGGAGGCGCTTAGCTAAATTCGAAACACTAAACTATTGAATCCGCCCGAAAGCGACTTTTAGCAGCGCTC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CTCCTATCCTCTAACGCTACTATCATATATGCTCTTTCCCCACCTTACTGCAATCGCACTCCGGCTGTGATTGC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TCGGGTCTGACTTCGCAAGTGGCGGTGTGCTTCAAAACCCCCTCATCCGCCCCTCGCCCGGCTCTCTCCACTCC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CCTCCCTTTTCCGCGCCCAGGCGAGAGCAGCCGATTGGCAGAGCGGGGCTTTCAGGAACAATAACAGTGGGGGG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 AGCCGGGGCCCCGGGGAGCCTCCCCGCCCCCGGCCCGGCTGCGGCTCACGCCCCTCTAGGGGTCCCCACCTCCG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CACCGCCCCACGGGCTGACCGGCGCCCGGGCCCGCCCCCGGCGCCCACCATGTACGCCTTTGTGCGGTTCCTGG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AGGACAACGTCTGCTACGCGCTGCCCGTGTCGTGCGTGCGCGACTTCAGTCCCCGCTCGCGACTGGATTTTGAC 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AACCAGAAGGTGTACGCGGTGTACCGGGGCCCGGAGGAGCTGGGCGCCGAGCCCGAGAGTCCCCCGCGTGCCCC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TCGGGACTGGGGCGCGCTGTTGCTCCACAAGGCCCAGATCCTGGCGCTGGCAGAAGACAAATCTGACCTTGAGA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 ACAGTGTGATGCAGAAGAAAATAAAAATCCCCAAACTTTCTCTCAGTCATGTAGAAGATGATGGGGAGGTTAAA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 GACTATGGGGAAGAAGATTTACAGCTTAGACACATCAAGAGACCGGAGGGGCGGAAGCCTAGTGAAGCGGCTCA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CAAGAGTATCGAGGCAGTGGTGGCCCGGCTAGAGAGACAGAACGGCCTGAGCCTGGGCCACAGCACTTGTCCAG 1850
Query 1 --------------------------------------ATGGAAAGTCTAGAAGATGCTGTGGTGCCCCGGGCT 36
|||||.|||||.||.||||||||.||||||||||||
Sbjct 1851 AAGAGGTCTTTGTGGAGGCCTCACCGGGCACAGAGGACATGGACAGTCTGGAGGATGCTGTCGTGCCCCGGGCT 1924
Query 37 CTGTATGAGGAGCTGCTGCGCAACTACCAGCAGCAACAGGAAGAGATGCGCCACCTCCAGCAGGAGCTGGAGCG 110
||||||||||||||||||||.|||||||||||||||||.||.||||||||||||||||||||||||||||||||
Sbjct 1925 CTGTATGAGGAGCTGCTGCGAAACTACCAGCAGCAACAAGAGGAGATGCGCCACCTCCAGCAGGAGCTGGAGCG 1998
Query 111 GACTCGGAGGCAGCTGGTACAACAGGCCAAGAAGCTCAAGGAGTACGGGGCACTTGTGTCTGAAATGAAGGAGC 184
|||||||||||||||.|||||.||||||||||||||||||||||||||||||.|.|||||||||||||||||||
Sbjct 1999 GACTCGGAGGCAGCTCGTACAGCAGGCCAAGAAGCTCAAGGAGTACGGGGCATTGGTGTCTGAAATGAAGGAGC 2072
Query 185 TCCGTGACCTTAACCGGAGGCTCCAGGACGTGCTGCTCCTGAGGCTTGGCAGCGGTCCCGCCATTGATCTGGAA 258
||||.|||||.|||.||||.|||||.||.|||||.||||||.|||||||||||
Sbjct 2073 TCCGAGACCTCAACAGGAGACTCCAAGATGTGCTACTCCTGCGGCTTGGCAGC--------------------- 2125
Query 259 AAAGTAAAGTCAGAATGTCTCGAGCCCGAGCCGGAGTTACGGAGCACTTTCAGTGAGGAAGCAAATACGTCGTC 332
Sbjct 2126 -------------------------------------------------------------------------- 2125
Query 333 CTATTACCCCGCTCCTGCGCCTGTCATGGACAAGTATATCCTAGACAATGGCAAGGTCCATCTGGGAAGCGGGA 406
||||||||||||||||||||
Sbjct 2126 ------------------------------------------------------GGTCCATCTGGGAAGCGGGA 2145
Query 407 TTTGGGTTGATGAGGAGAAATGGCACCAGCTACAAGTAACCCAAGGAGATTCCAAGTACACGAAGAACTTGGCA 480
|||||||||||||||||||||||||||||||||||||.||||||||||||||.|||||||||||||||||||||
Sbjct 2146 TTTGGGTTGATGAGGAGAAATGGCACCAGCTACAAGTTACCCAAGGAGATTCTAAGTACACGAAGAACTTGGCA 2219
Query 481 GTTATGATTTGGGGAACAGATGTTCTGAAAAACAGAAGCGTCACAGGCGTCGCCACAAAAAAAAAGAAAGATGC 554
||.|||||.|||||||||||||||||||||||||||||.||||||||.||||||||||||||||||||.|||||
Sbjct 2220 GTCATGATCTGGGGAACAGATGTTCTGAAAAACAGAAGTGTCACAGGAGTCGCCACAAAAAAAAAGAAGGATGC 2293
Query 555 AGTCCCTAAACCACCCCTCTCGCCTCACAAACTAAGCATCGTCAGAGAGTGTTTGTATGACAGAATAGCACAAG 628
|.||||.||.|||||||||||.||||||||.||.||||||||||||||||||||.|||||||||||||||||||
Sbjct 2294 AATCCCAAAGCCACCCCTCTCTCCTCACAAGCTCAGCATCGTCAGAGAGTGTTTATATGACAGAATAGCACAAG 2367
Query 629 AAACTGTGGATGAAACTGAAATTGCACAGAGACTCTCCAAAGTCAACAAGTACATCTGTGAAAAAATCATGGAT 702
||||.|||||||||||.||||||||||||||||||||||||||||||||||||||||||||.||||||||||||
Sbjct 2368 AAACGGTGGATGAAACGGAAATTGCACAGAGACTCTCCAAAGTCAACAAGTACATCTGTGAGAAAATCATGGAT 2441
Query 703 ATCAATAAATCCTGTAAAAATGAAGAACGAAGGGAAGCAAAATACAATTTGCAA-------------------- 756
|||||.|||||.||||||||||||||||||||||||||||||||||||||||||
Sbjct 2442 ATCAACAAATCTTGTAAAAATGAAGAACGAAGGGAAGCAAAATACAATTTGCAATAAACTTTAAATTTTTTTCA 2515
Query 757 -------------------------------------------------------------------------- 756
Sbjct 2516 TAAGGCCTTTGCATTTTTTTTGTGTGTGGTGTATGCATTTCAGGTGATGGTGCCATCCAAATAGACTACACCAG 2589
Query 757 -------------------------------------------------------------------------- 756
Sbjct 2590 ACATGGCTGTGTCTGGGCAGGGGGCCTTCAGGGCACTGAGGTCAGTGTCTTATTCTGAATTTGGACTTCCTACT 2663
Query 757 -------------------------------------------------------------------------- 756
Sbjct 2664 TCGAAGAAGGCAGATGGATTCACTGAGACTCAGCATGAGGCTCAGTACGAGCCTCATGCCATTGCCAGTGTTGT 2737
Query 757 -------------------------------------------------------------------------- 756
Sbjct 2738 TATGGAACGGGAAAAGCACTTTTCGCAGGGCTGTAAAGCATCAGAGTAGCCTGTCGGGACCACAATACGAACTG 2811
Query 757 -------------------------------------------------------------------------- 756
Sbjct 2812 TTATTTTTACCATCGGAGGATATCTCTCTCTGCTCCTCTATTTTGTTCTATAATAAAATTCCATTAATTCTTGA 2885
Query 757 ---- 756
Sbjct 2886 TGTA 2889
