Nucleotide Global Alignment

Description

Query:
TRCN0000469746
Subject:
XR_002957765.1
Aligned Length:
4993
Identities:
243
Gaps:
4715

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACAGAGGACGTGGGCGCCCGCCGAAGTACGTGTGCGCGCGCGCGTTTGCAGGAAAACGTGCATGGATTTCTTCG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GTGTGGCAGAGAAGGCGCCTAGGCGCTGTCCGTAGTGCTGAAATGGTGCGTGGTGAGACCTGTCTCCCCAACAC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AAGCTAGAAGACAACAAAATAGCAGCCAGGAAACGCTCTGATAAAGCTCTAGATAGCTGCCAGGTGATGCCAGA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GATTACTAGTTTTGGGACCAATTAAAGTAGCAAGATGCAGCCAGGAGTGGTGGCTTATGCCTGTAATCCCAGCA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CTTTGGGAGGCCGAGGTAGGAGGATCACCTGAGGCCGAGCTCAAGGGAGCAGAACTAAGTTACATGATTCTGCT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GCGGATGTATAAGCACCACTCCAATAATTTATTATCACGGTTGGAGACTTTGACTTGTCACTTTATGACTTGAA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  ATATGGCTCCATGGTAAATGCCCATAAAGCTGATTTTTAAAATCTGGATATTACAGTTCTAATTCTCACTTAGT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TTAAAAGGTAGAATAGGCTTCTTGTTTCATAGATCATTTGTGTGAATGTTGATTTGTTATGTCATTGACATCAT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  ACACACATGCTTACATTTTGAAGGTTGCTAGCGTTTCCCATTAATGCTTCTGAATTGATGCCAAAGGAAAGCAT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TGATTATAAATTAGGTTCCTTGGTATTAGTTGGTGCATGACCCTGACCCTTTTCAAGCTATATGAAAGGTAATG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  ATGCTCTCAAAAGCCTGCAAAATGGCTTATTCAGGAAAGCATAATGGATTAAAAATCCATTAGGTTCCACTTTC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TTTGCTAGATGCTGAGATACAAAGATAAATGAGATTTGGTCTCTGCCCTCGAGGAGATACGTGGCAAAATAATA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TGGTAAGTTCTACAAAGTTCTATACAAACACAGATTAATATGCTATTCATGTTTTATTAGCCATTGCCAAAGAA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GGGATGAAGAACTGCAAAAAGATAAAACACAGAATACTTGTACTTCAGGTCCTTGCCAATATCTACTGCCCAAC  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TTTTACAAAAAAAATTGCTGAAAGGCATGAAATATATGAATGCCTTTCTAAAGCACATGTGGATAATCTATACT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  TCTGGAGCATCTATGATTTATTTTCAGAACAATCCAAGTTATTAGAAAGGTAAATATGTTGGTGACATTGTTTA  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  GAAGTTCCTCAAGCAGAATTGCCTTTACTATGCTTTGACATTATGCTCTCAGCTTATATACAGTAATTCTATGT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  GAAACAGTAGCCAGCTTACACAACCTGCTCTATATCTACTACAGAGCTGTTACTAAAGTGTTGGTCAACATATA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  ACTTACTATTTCTTATATAAAGATGCCCAAGAAATTTAGATTTCATAGATATATCCCCAAAAGCATTTCTTTCA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  ATACCAGTTTAATGAATTGAACTTTCATACCTCACTTAAATCAACCCAGGGTAAAGTGGTATGTTCTGTTCTTA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  CACACAATGAAAATCATGTAACTAATTAAAGTTAGCATTTATTTTAGCTACTAGGGATGCCAGAGTCAAATTAA  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  CAGCTGAAAATGAATAACTACATAAGACCTTAAGCCTTTTATATCTTTTCTTTTTTTTTAATCACCTTAACTAC  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TGCAATTTTGGTTTCTTAGGTAATGATAATATTATTTTCTTTTAATTATTTGTTTTAATGTGTGACCTCATGTA  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  AATGTCCTCATAAAATCAGAAGTGGAGTAAATAAATAAATAAAGTAAATTTCTCTACTTTTTGATTATTGGGTG  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  AGTGTATATGGTTGTTTTATAAATTTATTCTAAATAGGATACTAAAATACAGAAAATGTATCATCTAATTAGCT  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  ATGAAGATAAAAATCTAAACTATAATGAGGAAATATTAAAATGTCAAGATGACGAAGAAATTTTTCAGTTTATA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TAATTATAGATCAGCTTAATTTCAAACCACTTTGTTACCCTATTGCTATTTTTATACTCTAAATAGTGTCCCTT  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  ATATGACTAAGACTTTTTGTTATCTCAGAGATTGGAAGTGTTAATTGTCCACCTTGTTAGAAGACATGGTAACT  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  ATAGGAATTTAGAAAGCATGATAGCCCAACTGTAATGAATATATTCTAGAATGAGGTTGTCACAAAGAAACTGA  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  AAACAAGAATTTCCTCTAACAACTGAGCTCAGGATTCTTTTCAGAGGAAAATTTAGCTTGCATAAATTCTTGCC  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  ATCTTGGCTCTAGTTGACTTCTTGCTCTCAACTTTTGCAAAGTGAGATCACCTTTACCTCTTCAACCTATGAGG  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  CCAACATGTTACTTTCAATTTTTCAGGAAAATCTACGTCTTGTTTGGCTGAGGTTTGATTATTATTCCTTAACT  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  AAAATATTTTAATGTAGCTGTGCTTTTTAATTTGAATATTGCTATTGATTCAAACATTGGGTAGCATATCTTTC  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  AAATGTGAAATTTTAAAACATGTATTAAAGACAAACATAAATTAGTTTTGGTATAACTATTTTTTAAGATTAAT  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  CCAATGCTTTTTTGGCTTTAGATGATGTTTGGTAATTAGCTATATTCAAAAGTCAACCTTTTTTTTTTTTCAAA  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  AAATGAACTCCTATGTATATGAGTGTTATTTTTATCTACCCATGTCTTTTTTGTCTACATATACAGTTTTAATC  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  ATTGTTTCGGGGGGAGGAATAAGAATGATTTTGAAATTTCACTAAGAAAGATATGCCCTCTTCCTAAAAATACA  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  TATATACAGATGTTTTGCTCACAGCTCAGGTATTCATGGATCTCTGGAAGTTCATTTTTATAATCCCAAGGTAA  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  TCCAAAGAGCCTGCTAAAAAATTCTGCTGTAAATGCATGGTACATGATCTCATTCCCTGTTTTACAACGAAGTA  2886

Query    1  ----------------------------------------------ATGGAGTCTTGCTCTGTCACCCAGGCTG  28
                                                          |||||||||..||||||.||||||||||
Sbjct 2887  TTGAATGGCTTAAACTCCTACTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCCCTCTGTTACCCAGGCTG  2960

Query   29  GAGTGCAATGGCGCGATCTCCACTCACTGCAACCTCTGCGTACCAGGTTCAAGCGATTCTCCTGTCTCAGCCTC  102
            |||||||.||||.|||||||..|||||||||||||||||.|.|..|||||||||||||||||||.||||||||.
Sbjct 2961  GAGTGCAGTGGCTCGATCTCTGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTT  3034

Query  103  CTGAGTAGCTGGGATTACAGGTGCCCA--CCACCACAGCTGGCTAA-----------TTTTTGTATTTTTAGTA  163
            |||||||.|||||||||||  .||.||  |||.||...||||||||           |||||||||||||||||
Sbjct 3035  CTGAGTAACTGGGATTACA--AGCACATGCCATCAGGCCTGGCTAATTTTTATTTTTTTTTTGTATTTTTAGTA  3106

Query  164  GAGACTGGGTTTTACCATATTGGCCAGACTGGTCTCGAACTCCTGACCTCAGGTGGTCCGCCTGCCTTGGCTTC  237
            .|..|.||||||.|.|||.||||.|||.|||||||||||||||||||||||  ||.||||||||||||||||||
Sbjct 3107  CAATCAGGGTTTCAGCATGTTGGTCAGGCTGGTCTCGAACTCCTGACCTCA--TGATCCGCCTGCCTTGGCTTC  3178

Query  238  CCAAAGTGCTGGGATTATAGGAGTGAGCCACTGCGCCTGGCC-----------ATT------------------  282
            |||||.|||||||||||.|||.||||||||..||||||||||           |||                  
Sbjct 3179  CCAAAATGCTGGGATTACAGGCGTGAGCCAACGCGCCTGGCCAACTCCTACATATTTTAAAGCCACCCCATTAG  3252

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3253  TTTTCTATTTTTTTCCCCTTGGAGATCTTCCTTTAGGTCATTTTTACCATCTGATATCTCAAAACTAAGCCAAG  3326

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3327  GCTGAATGTGCTGAAATAGGATTAGAGAGTACAGTAATAGGATAATTAGATTTGATTAGAAAATGACTGTGTGG  3400

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3401  GATTTTGTCAACAGTGAAGAAATGATCTAAGTATGTGGACTCCTAAGTGAATTGAGCATGATGACACTTTAGTG  3474

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3475  TAGTTAATGATCTAATGCTGGTCTGGTTGATGAGTCCCATTGAAAATGAGATGCTCTGTTTTCTGGTAAACTTT  3548

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3549  TCTGCAAAGAAAAATGTACTAAATGTTTCAGTTCAGAGTGTTCTATTTAAATGAAATTTCATTTAATTGCTTTT  3622

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3623  AGTTTTACTGCCCATAAGCCTTCAGTTGTTTCATTTAAAGTGTACTTTAAGCCCTCCACTATATTCACTGTTGA  3696

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3697  ATCTAATGAGTATGAGAGGGTACCTTGGGCACAATCTCCACGAATGTATGAGCCATAACTACAGTATAGTATAT  3770

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3771  AGAGATTAGCTTAAGTTATTTTGCTCTGCTAAAGATAGAGAAACAAGAGCAGTTTTCTAACATAATGTATGCTT  3844

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3845  CTGTAATAGGACTCAGTTAAAAAATAATTGGCAAATAGGAATGTCAATGAAATGTGGAAATCAATTGTTTTATA  3918

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3919  CATGATTTTCCCCAATACGTTAATGTTTTGACTACCAAGTAAAAGCAGTTGCACTCTAAGTCCACTAACACAGC  3992

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3993  TGAAGGTAGTAAGCTGTGGAGGAAAGTAGTCCTATATATAACACCCATTCACTCCTCCTTTTTCCTCTTGGCTT  4066

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4067  AATTTCACCATACGATCTGTCTTGAAAATGCTTATTGCACAATTCTTCCTGATCTTTGTGCATTTGTCCTTGTT  4140

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4141  TTTGTAACTCAACCTTTGGTTTATTTATTCCATCATTCTTTCCTAACTCAAACAAATTTGTGAAGTTCTAAATG  4214

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4215  TATTGAAATATATGTCGTAACTTTTATTTTTAATTGTGCTAGCATTTTCTTAGCTTTGTAAATGTTTTTTGCAG  4288

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4289  TGCTATGGTTGTGATGTTATGTAAGTTTTACACTTTTTTCTCCAACATAATTTTTTCCCGAAATATTGCCAGTT  4362

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4363  ATTTTTGTTATTGAATAGACTTAATTTTCTTAGAGCAGTTTCAGGATTACAGAAAAGTCAGAGAGTACAGAAAG  4436

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4437  TTCCCATATATCTCCCATCCCTTTTCTCACAGTTTCACTTGTTATTAACATCTTACATTAGTGTGGTACATTTG  4510

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4511  TTAACAATTGATAAAACAATTTTGTTACATTATTATTAAGTACACAGTTTACACTAGAGTTTATTCTTTTTGTT  4584

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4585  GGTCAGTTCTATGAGTTTTGAATAGTGTATAATGTCATATATTCACCATTATATTGTCATGCAGAATAGTTTCA  4658

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4659  CATTTCTGAATATCCCCTATTTATCCCTTCCTCTTCCCCTCACAAACCCCTGGAATCCATTGATCTGAAACTGT  4732

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4733  CTTGCAGTTTTCTCTTTTCCAGAATGTATGTATAGAGTCATACAGACTCTGTTGCCCTTTCAAACTGGCTTCTT  4806

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4807  TCATTTAACAACACGCATGTAAGCATCCTTCATGACTTTTCATGGCTTGATAGCTCATTTATTTTTTATTGTTC  4880

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4881  AATAATATTTCATTGTATGGATATGCCACAGTTTATTTATCTATATATCTGTTGAAAGATATCTCGGTTACTTC  4954

Query  283  -----------------------------------  282
                                               
Sbjct 4955  CAATTTTTGGCAATTATGAATAAAGATACTATAAA  4989

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.