Nucleotide Global Alignment

Description

Query:
TRCN0000469746
Subject:
XR_926295.3
Aligned Length:
5724
Identities:
240
Gaps:
5452

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TTCCTATGTAGCCCAGGCTGGTCTTGAACTCCTGGGCTCAAGTGATCCACCCAACTTGGTCTCCCAAAGTGCTG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GGATTATAGGCGTGATCCACTGTGCCTGGCCCTGTCATTTCTTTTCTCAGAGAGGATAACAATTTATTTGTCCT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  ACAGAAAGTTTTAAATGTTGAAGGAGATTGGCCTGGAAATATGCTTTTGGGGAGCAACACGGTCTGAGCCAGAC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  ATCCAGATACAGCCCATTCTTCTGGCCAGTCTTGCCCTTTGCTCCTGATTCTCCAAGCTGTACCCAGAGCTTTC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TGGTTCAGCATGTACCTGGAGGCTGCTTTTGACCATGTTTTGAGAGTGGCATGGCTTTATCTAATGGGATGAAC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CTGGCTAAAGAGATTAGCAAAATGTCTTGTGGATCCCACTTTTAATCTGCAGCGTTCAGGCTGCCCCTTCTTGG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CTGGGAAGGGCGCTGAAGAAACAACGCCCAGGACCAGGACTATCCCCTGCTCAAGCTGTGATTCCGAGACCCCT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GCCACCACTACTGCATTCACGGGGATCCCAGGCTAGTGGGACTCGACATGGGTAGCCCCCAGGGCAGCTCCCTA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CAGCTTGGGCCATCTGCACTTTTCCCAAGGCCCTAAGTCTCCGCCTCTGGGCTCGTTAAGGTTTGGGGTGGGAG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CTGTGCTGTGGGAAGCAACCCGGACTACACTTGGCAAGCATGGCGCTACTGAAAGTCAAGTTTGACCAGAAGAA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GCGGGTCAAGTTGGCCCAAGGGCTCTGGCTCATGAACTGGTTCTCCGTGTTGGCTGGCATCATCATCTTCAGCC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TAGGACTGTTCCTGAAGATTGAACTCCGAAAGAGGAGCGATGTGATGAATAATTCTGAGAGCCATTTTGTGCCC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  AACTCATTGATAGGGATGGGGGTGCTATCCTGTGTCTTCAACTCGCTGGCTGGGAAGATCTGCTACGACGCCCT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GGACCCAGCCAAGTATGCCAGATGGAAGCCCTGGCTGAAGCCGTACCTGGCTATCTGTGTTCTCTTCAACATCA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TCCTCTTCCTTGTGGCTCTCTGCTGCTTTCTGCTTCGGGGCTCGCTGGAGAACACCCTGGGCCAAGGGCTCAAG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  AACGGCATGAAGTACTACCGGGACACAGACACCCCTGGCAGGTGTTTCATGAAGAAGACCATCGACATGCTGCA  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  GATCGAGTTCAAATGCTGCGGCAACAACGGTTTTCGGGACTGGTTTGAGATTCAGTGGATCAGCAATCGCTACC  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  TGGACTTTTCCTCCAAAGAAGTCAAAGAGTTGCAGGATGAGCAGAGCTGCAGTGTCTTGGGGTGAGAGGTAGAA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  CATGCGGGAGCTCAGACATTTTGGAACCAGGAACTACCAGCCAGGAAGGCCCAGCCTGGGGTCCCCAGTCTGAG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  GGAGAAGCTGGCACCAAGCTCTTGCTCTTCACCATTCTTCCCAGGGAACCCACAGACTACAGTCGAATCAAGAG  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  CAACGTGGATGGGCGGTACCTGGTGGACGGCGTCCCTTTCAGCTGCTGCAATCCTAGCTCGCCACGGCCCTGCA  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  TCCAGTATCAGATCACCAACAACTCAGCACACTACAGTTACGACCACCAGACGGAGGAGCTCAACCTGTGGGTG  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  CGTGGCTGCAGGGCTGCCCTGCTGAGCTACTACAGCAGCCTCATGAACTCCATGGGTGTCGTCACGCTCCTCAT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  TTGGCTCTTCGAGGTGACCATTACAATTGGGCTGCGCTACCTACAGACGTCGCTGGATGGTGTGTCCAACCCCG  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  AGGAATCTGAGAGCGAGAGCCAGGGCTGGCTGCTGGAGAGGAGCGTGCCGGAGACCTGGAAGGCCTTTCTGGAG  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  AGTGTGAAGAAGCTGGGCAAGGGCAACCAGGTGGAAGCCGAGGGCGCAGACGCAGGCCAGGCCCCAGAGGCTGG  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  CTGAGGGCCCTGGGGCCCCTCCCCTCCCGAACACTGAGAAATAGTGCACTCCAAGAAACGTGGATCTCCCCCTC  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  ATCCAACTCCGAAAGTCTGAATCTCCCAAGGAGGGCACCATCTTACAGAGACTCTCCCTGACGGTGGAATTTAA  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  GTTTAGGGTCCCTAAAAGCATTTGACACACAGTTGTTGAATGACTGACCCAAAATGTGAATGAAGCTAATGTGA  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  ATGTGAGTGAAGCTCCCTTCAGGCCCGCTGCCCTAGGATATGCCCTCCTGGTGACTCGGGGGCTGTCTCAGACG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  ACTAGCCCAGGACCCATCTTTCTCACACGGATTTAGTCCCACCCTATGGCCACTGGCCGTATCTGAGGGCTGCT  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  CCCCTTTTAGAATTTACCTCTTATGAGCTCCATGTTGCTTCACTCTATCCAAAGTGTCACTTGGTGCATAAGCA  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  CAGAAATCTGAAAAATGGCCATGTTGTCTTTTTTTTTTTTTTTTAATGCCAAGATTGACAGGTTGGCCGTTTGC  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  TTAATGCCAGAAGTTGGGGGAAAGTTACGCTTTTCTAAGAATAATGGACTCTTAAGGCATTGAGGGCTCTAAAC  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  AGGATTCTTTAATCATGGAGCAAGAGAATTTCAAGGCAGGGGATTTTATCCCCCACCAAAAACACAGTGAAAGG  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  CCTGCTTTTGTGTCCCATTCACATGCCCTCGGTCACTGAGTCTGGAGTGAACCACGGGTTGAGGAAGTCAGGCT  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  GTTGGCGTGTCCCAGCACCACACCACCCCTAAAGTGCCAGGTGATCTCCTGTGGCTCATCGGTGGAAGCAGTGG  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  GGTAGGCTGCTGCCCTGCTGTGGAAGAGGAGCAACAATCAGACATGAGTCCACCCTTTGGAGACCAGGCCTCAG  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  CTCTTGGTGGGCCCAGGGACACCCACACAGGTGGCCATCACAGCCCCATGGACAACACTAATTGTCCACAGCAA  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  AGGGCAAGGAATCCTCTGGGAGCTTCTTCCGTTTCTTCCCCCCAGATACCCATCTTGAAAAACACTATTTCTGG  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  AATGCTTCTGCATCAAAGGAGATTCTTTGAGATAGCCCATCTTCCTGAGCTAGCAAATACAGGAGTTTTCACTT  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  TCTTTAGGAAAGAGAAGCTTTCAGGGGAAGGAGAGAATGATTTTGCTGACTTCCCAAGCCCTGGTGACCAGACC  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  AAGGCAGGGCCCAGCATAATTCCTCCAGTTGGATGAACATTCAAGAGAGCTCGTTCCTACCTGGCTGGAGACCG  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  AGGCCAGAAGGCAAAAACCAGAAAGGGAACAGTCCATAACTTACCTCTGCTTCTGACCGATGGTGTTTGGGAAT  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  AGGTTACTTTGGACTGAGTTTGGGTTCTCTGCTGTCCTAAGAACTTCAGTGTAGAGAAAATAAGACTTCTGGTG  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  CTGCTGGGGTATGTTCTGGGCTTAATTCCCCCAAGCAGAAGACCAGATCCAAGATGTTTGGACACCCTGTCAGA  3404

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3405  CGTTGGTCCCAAGTTTAATTAGATTTCTGAATCTCGTTGAGGCCAAGGAATGATCCATACTGAAAAAATGCTGA  3478

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3479  GCCAGCCATCTTTGGCAAAGGTCCCTGAGCTCTTGCTATCTCTCAAGAGTGCTGAGAACCACGGTGAAAGTGCT  3552

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3553  GCTCTAGGCCCACAAGTGTAACTATGCTGTTAACAGCTGTCAATAGATAATTAAAATTCATACTGTATGAAAAT  3626

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3627  CACTTTTGTTAAATGACTGTTTAAGCCCATTCAACAACATATATCAGAATCCCCTACTACCGCTAGTATTTGCC  3700

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3701  AAAAAAGAAAAGAAACCCACCCTAAGGGAAGCATTGGTAACAATCGTTGTTATAAACATGGCTTGGGTATCACA  3774

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3775  TCTCTCCATCTTGCCATCTCTTACCTGTAAGAACGGTGACTATTACAACAGTGACTATTATTATATCCAAATAA  3848

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3849  TCTCAGCATTTGCTGGAGTTTGAACCAGAGCTGAATACATGGAATTTTAATGTAGAAATTTAGGCAAAACTCCA  3922

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3923  AGCCATTTTTTCTTCTCCTCTGGCCAAAACGTTATTTCCTCAAACAGGGAAATATGAGTCTCTATGGGGCCAGG  3996

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3997  TTATAGGAGCAAATGTGAACAACCTGAGAATCTGAAGGTTGTTGAGAGGACCAAGAGTGCATTGACTCTACAAT  4070

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4071  AAATCTCACTCATTGGTTCGGAGCAGGCTTAGGGTTAACTGCATTTTAACAGGTCTTCTCAGGTAGCCGGTAGT  4144

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4145  TGCGAGAGAAACCTGGACCATCCCTTTTGGTCACCTACCAGTGCCCAGGAAGTCTCTGCTATCAGGTTTTTGCT  4218

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4219  TGTGTGTAACTTCAGTCTTTCCTTGGGCTGGTGTAAATCCTTTTCTCCTGAGGGACCCAGCCTACTTTTTTTTT  4292

Query    1  -------------ATGGAGTCTTGCTC-TGTCACCCAGGCTGGAGTGCAATGGCGCGATCTCCACTCACTGCAA  60
                         |||||||.|||||| |||..|||||||||||||||||||||..||||||..||||||||||
Sbjct 4293  TTTTTTTTCAAATATGGAGTTTTGCTCTTGTTGCCCAGGCTGGAGTGCAATGGCATGATCTCAGCTCACTGCAA  4366

Query   61  CCTCTGCGTACCAGGTTCAAGCGATTCTCCTGTCTCAGCCTCCTGAGTAGCTGGGATTACAGG----TGCCCAC  130
            ||||.||.|.|..||||||||.||||||||||.||||||||||..|.||||||||||||||||    ||    |
Sbjct 4367  CCTCCGCCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCTACTAGCTGGGATTACAGGCGTTTG----C  4436

Query  131  CACCACAGCTGGCTAATTTTTGTATTTTTAGTAGAGACTG-GGTTTTACCATATTGGCCAGACTGGTCTCGAAC  203
            ||||||..|.||||||||||||||||||||.|||||| || |.|||.|||||.||||||||.||||||||||||
Sbjct 4437  CACCACGCCCGGCTAATTTTTGTATTTTTATTAGAGA-TGAGATTTCACCATGTTGGCCAGGCTGGTCTCGAAC  4509

Query  204  TCCTGACCTCAGGTGGTCCGCCTGCCTTGGCTTCCCAAAGTGCTGGGATTATAGGAGTGAGCCACTGCGCCTGG  277
            |||||.|||.|||||.||.|||.||||||||.||||||||||||||||||||||||||||||||     |||||
Sbjct 4510  TCCTGTCCTTAGGTGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTATAGGAGTGAGCCA-----CCTGG  4578

Query  278  CC-------ATT--------------------------------------------------------------  282
            ||       .||                                                              
Sbjct 4579  CCCAGCTAGCTTTTAAAGTTCTGCCAGCATAGCCCCGGGATGGGGTGGGGGTAGACAGGGCCTTAGGACTTTCA  4652

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4653  TTTTTAAAATGCTCACTCCACGGTGAAGAAACAGGTGATGACTATCCTGAATATTTGGGAAGCTGTGTCCTAGA  4726

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4727  ATTTTTGGCCTCAGTTCCAGAACCCACAGCTTCTTTACAACATGCTTCAAGCCTGGGACTGAGCTGCCAGTAAA  4800

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4801  TAAACCCCTAGTAACCTTAATATGGGTTAATAAGATTAGGTGCCCGCTCTGCACGCTCCCCTGCCCCTCCTCGT  4874

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4875  CCGGGCACCTGTTACACTAGGCCAGCATGTTTGCAGCTTAGCCAGGGAAAATCGTGGACCAAGACAGGGCTTTT  4948

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4949  CATCCACGACTGGCTAAAAAGATGGCTCTCAATGACAGCGCAGGCAGGCAGCACCACTGTGTTAGGAAGAGAAA  5022

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 5023  AGTGTCTGTCCAATACTATGAAAGTCCAGGGAAGAGACAAGTGCCTTCCCAGGTCACAATGGATAGATTGGCTG  5096

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 5097  GAAGGGGAAAAACATGTCAGTTCTTAACTCCTGACAGCATTTTATCCTGTCCATCACAGAGGACTGTAAACAGC  5170

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 5171  AAAGTTACAGATTAGAGAATGCTGAGCTCTCAGGATGGCATCAAATGGAGGATTAAGATGTAAGGGACAACTTC  5244

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 5245  TAGCTATTTACCTGAGGGAAGTGAAAATTCAGGTTTGTACAAAAACCCATCCATGAATGTTTGTAGCAGTAATC  5318

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 5319  ACCAAAACAATCACCCAAACTCACCCAAATGCCCTTCATCTGGCAACTGCCCAGAAGTCTGTACAACGGAATGC  5392

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 5393  TACTCAGCAATCCAAAGGAACAGGGAGGACCCGAATGCATTCTTCTTTAGTGAGAAGCCAGACTCAAAATGCTA  5466

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 5467  CATATGATACAATTCCATTTATATAACATTCGGGAAGAGACAAAACAAAGGGAGAGAAAAACACTGGTAGCTGA  5540

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 5541  AAGCCAGGATGAGGCAAGAAGCTGACTACAAAGGGGACTTTTGGGGAAGATGGAATTGTTCTATTTCTCGATTG  5614

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 5615  TGGTTGTTTAACTGTATGCATTTGTTAAAATGTATAAAACTGTACACTAAAAAGAGTTAATCTGTTTGTAAAAT  5688

Query  283  --------------------------  282
                                      
Sbjct 5689  ATACCTCAATAAATGTGACTTAAAAA  5714

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.