Nucleotide Global Alignment
Description
- Query:
- TRCN0000471410
- Subject:
- XR_002957030.1
- Aligned Length:
- 2518
- Identities:
- 1366
- Gaps:
- 1007
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CGGTGCCGGGCGCCCAGGGGTTGCCGCGCTGGGCGGGAGGGCAGCGCCTGAGAGGGCGGTGGGGTGGCGGGGTT 74
Query 1 -----------------------------------------------------ATGGGCATCTACCAGATGTAC 21
|||||||||||||||||||||
Sbjct 75 CCTGCGCGCGGCCCGCCATGGAGGTGGAGGAGGCGTTCCAGGCGGTGGGGGAGATGGGCATCTACCAGATGTAC 148
Query 22 TTGTGCTTCCTGCTGGCCGTGCTGCTGCAGCTCTACGTGGCCACGGAGGCCATCCTCATTGCACTGGTTGGGGC 95
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 TTGTGCTTCCTGCTGGCCGTGCTGCTGCAGCTCTACGTGGCCACGGAGGCCATCCTCATTGCACTGGTTGGGGC 222
Query 96 CACGCCATCCTACCACTGGGACCTGGCAGAGCTCCTGCCAAATCAGAGCCACGGTAACCAGTCAGCTGGTGAAG 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CACGCCATCCTACCACTGGGACCTGGCAGAGCTCCTGCCAAATCAGAGCCACGGTAACCAGTCAGCTGGTGAAG 296
Query 170 ACCAGGCCTTTGGGGACTGGCTCCTGACAGCCAACGGCAGTGAGATCCATAAGCACGTGCATTTCAGCAGCAGC 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 ACCAGGCCTTTGGGGACTGGCTCCTGACAGCCAACGGCAGTGAGATCCATAAGCACGTGCATTTCAGCAGCAGC 370
Query 244 TTCACCTCCATCGCCTCGGAGTGGTTTTTAATTGCCAACAGATCCTACAAAGTCAGTGCAGCAAGCTCTTTTTT 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TTCACCTCCATCGCCTCGGAGTGGTTTTTAATTGCCAACAGATCCTACAAAGTCAGTGCAGCAAGCTCTTTTTT 444
Query 318 CTTCAGTGGTGTATTTGTTGGAGTTATCTCTTTTGGTCAGCTTTCAGATCGCTTCGGAAGGAAAAAAGTCTATC 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CTTCAGTGGTGTATTTGTTGGAGTTATCTCTTTTGGTCAGCTTTCAGATCGCTTCGGAAGGAAAAAAGTCTATC 518
Query 392 TCACAGGTTTTGCTCTTGACATCTTATTTGCAATTGCAAATGGATTTTCCCCCTCATATGAGTTCTTTGCAGTA 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TCACAGGTTTTGCTCTTGACATCTTATTTGCAATTGCAAATGGATTTTCCCCCTCATATGAGTTCTTTGCAGTA 592
Query 466 ACTCGCTTCCTGGTGGGCATGATGAATGGAGGGATGTCGCTGGTGGCCTTTGTCTTGCTTAATGAGTGTGTGGG 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||
Sbjct 593 ACTCGCTTCCTGGTGGGCATGATGAATGGAGGGATGTCGCTGGTGGCCTTTGTCTTGCTTAATGAATGTGTGGG 666
Query 540 CACCGCCTACTGGGCACTTGCAGGATCGATTGGCGGCCTCTTCTTTGCAGTTGGCATTGCCCAATATGCCCTGT 613
|||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||
Sbjct 667 CACCGCCTACTGGGCACTTGCAGGATCGATTGGCGGCCTGTTCTTTGCAGTTGGCATTGCCCAATATGCCCTGT 740
Query 614 TAGGATACTTCATCCGCTCCTGGAGGACCCTAGCCATTCTGGTTAACCTGCAGGGAACGGTGGTCTTTCTCTTA 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TAGGATACTTCATCCGCTCCTGGAGGACCCTAGCCATTCTGGTTAACCTGCAGGGAACGGTGGTCTTTCTCTTA 814
Query 688 TCTTTATTCATTCCTGAATCACCTCGTTGGTTATACTCCCAGGGTCGACTGAGTGAGGCTGAAGAGGCGCTGTA 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TCTTTATTCATTCCTGAATCACCTCGTTGGTTATACTCCCAGGGTCGACTGAGTGAGGCTGAAGAGGCGCTGTA 888
Query 762 CCTCATTGCCAAGAGGAACCGCAAACTCAAGTGCACGTTCTCACTAACACACCCAGCCAACAGGAGCTGCAGGG 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CCTCATTGCCAAGAGGAACCGCAAACTCAAGTGCACGTTCTCACTAACACACCCAGCCAACAGGAGCTGCAGGG 962
Query 836 AGACTGGAAGTTTCCTGGATCTCTTTCGTTACCGGGTCCTGTTAGGACACACTTTGATCCTGATGTTCAT---- 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 AGACTGGAAGTTTCCTGGATCTCTTTCGTTACCGGGTCCTGTTAGGACACACTTTGATCCTGATGTTCATCTGC 1036
Query 906 ---------------------CTGGTTT-----GTGTGCAGCTTGGTGTATT------------ATG-----GC 936
||||||| .||.|||||...||.| || ||| ||
Sbjct 1037 AAGTCTCCTGATCCTTAGCGCCTGGTTTTCTGCTTGCGCAGCCCCGTCT-TTCTCAAGTAGCAGATGATAGTGC 1109
Query 937 CTAA----------CTCTGAG--TG--------------------------CGGGTG--------ATCT--AGG 962
||.| |.||||| || |.|.|| ||.| |||
Sbjct 1110 CTGATGGGCAGGTCCACTGAGCTTGAAACCATCACAGCACTAGGAATATCACAGATGCATAATAAATGTTGAGG 1183
Query 963 --TGGAAGTAT-----TTATGCCAACC--TG---GC----CCTG----------------TCTGGCCTCA-TAG 1003
||||.|.|| |||.|..|||| || || |||| .||| ||.| |.|
Sbjct 1184 CTTGGAGGCATGGAGATTAAGAAAACCGTTGAAAGCCAAACCTGACAACACAACATAGGAGCTG--CTAATTTG 1255
Query 1004 AGATTCAATCTTACCCTCTC---TGTATCTACTTGATTAACCAAAAATGGTTTGGTCGGAAGCG--------AA 1066
||.||| |||||..|| .|.|..||||| ||.||..|||.|..|||....||.| ||
Sbjct 1256 AGGTTC-----TACCCATTCAAAAGCAAATACTT-----ACAAAGTATGTTCAGGTACTTAGGGCTCCATAAAA 1319
Query 1067 CATTATCAGCATTT--------------------------CTGTGCCTAGGAGGA-----CTGGCTTGTCT--- 1106
|.||| ||||| ||.|||||.|||||| || .||||| |
Sbjct 1320 CTTTA----CATTTGTGTATCACATAGACAGTCAGTCAACCTCTGCCTTGGAGGAACCACCT-ACTTGT-TGCA 1387
Query 1107 ----------TATTGTAATGTTT--------------------------------CTTCCA--GA-AAAGAA-- 1133
||||.|.||.||| ||||.| || |||.||
Sbjct 1388 GATTATTCACTATTTTTATTTTTTCCCCCATGTATATTAACTTCTGGGTTCTGGCCTTCAATGGATAAACAAAC 1461
Query 1134 -----------AGACACAGG-----------TG----TGTTTGCAGTGGTGA--------ACAGCCA------- 1166
||||..||| || |||| ||.| |.| |||||||
Sbjct 1462 AAACAAACCCTAGACTTAGGGCCAGGGAAACTGTCCCTGTT--CATT--TTATTTCTTACACAGCCAAATAAAC 1531
Query 1167 ---TTCCTTGTCCTTGCTGGGGAAGCT------------------GACCATCAGTGC------TGCC------- 1206
||||.|| ..||||.|.|.|.| |||..|||.|.| ||||
Sbjct 1532 TTCTTCCCTG---AGGCTGAGAATGTTAAAACATGTGATAATAGAGACAGTCACTCCACATATTGCCGTTCTTT 1602
Query 1207 TTTAACATTGTTTATA--TCTA----CACCTCTGAGCTTTACCCTACAGTCA-TCAGGAATG-------TTGGG 1266
||.||.||..|.||.| |||| |..|||||.|..| |.|||| |||.|||.| |.|||
Sbjct 1603 TTGAAGATGCTATAAAATTCTAAAATCTTCTCTGTGGAT-------CTGTCATTCAAGAAAGCCTTAACTGGGG 1669
Query 1267 CTTGGAACT--------------------TGTTCC-------ATGTTCTCCCGAGTTGGTG----------GGA 1303
.||..||.| |||||| ||.||| |.|.| |.||| ..|
Sbjct 1670 ATTCAAATTATACCTCTGTGTTAAACATCTGTTCCTTTAGTTATTTTC-CACAA--TAGTGCCTTTTTAAATAA 1740
Query 1304 TTATTGCTCCCTTCATCCCCT-----CACTG--AAATA-TGTGCAATGGTCTTTACCATTCATTGTCTTCGGAG 1369
|||| ||.||.|.|| .|||| ||||| |.||||| |..|||...||| |||| ||.||.|
Sbjct 1741 TTAT-------TTGATGCTCTAAATATACTGTTAAATATTATGCAA--GCATTTTAGATT--TTGT-TTGGGGG 1802
Query 1370 CC------------------------------------ACGGGTC----TGACCTCC-----------GGCCTC 1392
.| |.||.|| |||||..| |||..|
Sbjct 1803 ACATAAAGAGGATTGAAATGATTTTAATAGCTGTAATTATGGATCCCAATGACCAACTCTATGACGAAGGCAAC 1876
Query 1393 CTGAGTTTGTTATTGC----CGGAGACCCTTA---------ACAGTCCGC------TGCTAGAAACAT--TCTC 1445
|||| |.|||.||| | |||.|..|| |||| .||| ||||
Sbjct 1877 ------------TTGCAGAGCAGAGGCCC--AGCCCTGGGGACAATGGGCCTTCCATGCT----TCATGCTCTC 1932
Query 1446 CGACC-TTCAGGTGTATTCGTATCGCA-----GGCTGGGAGAAGAA---GCATTAT----CTTTACAGGCT--- 1503
| || ||| |.||.|| .||||||| |..|| .||.||| ||..||.||||
Sbjct 1933 C--CCGTTC-----------TCTCTCACCACCAGCTGGGA-ACTAAATTCCACTATTGTCCTGAACTGGCTTGT 1992
Query 1504 ------TTGGACCCCCAAC-----AGTGTGTGGACA-------------AGGAGAG-CTCTTTAGG-------- 1544
||| |||..|| |.||| .||| |||.|.| ||||.|..|
Sbjct 1993 CTATTCTTG---CCCTGACTTGATACTGT---CACAGCTTGATTTAAATAGGGGTGTCTCTGTGTGTGTGTGTG 2060
Query 1545 -------------------GAGTGAGAGTGAGGAAGAGGAAGAATTT-TAT----GATGCAGATGAAGAGACTC 1594
|.|||.|.|||.||..| |||||| ||| .||||| |||.||||.|
Sbjct 2061 TGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGGCTG-----GAATTTCTATTGTAAATGCA---GAACAGACAC 2126
Query 1595 AGATGATCAAG--------------------------------------------------------------- 1605
|||..|.|||.
Sbjct 2127 AGAAAACCAACTGGGAAACAGCATTATGTAAATGCTGTTTCTGCAGGTGTAAGGGATTTTAAAAACGTTTTAGA 2200
Query 1606 -------------------------------------------------------------------------- 1605
Sbjct 2201 AAACTGCATGGATTTAAATTTATTTTGCCTTCTGCTTTCATGCAAGATACCTGGGAGACAGTGAGAACAGACAA 2274
Query 1606 -------------------------------------------------------------------------- 1605
Sbjct 2275 TGCAGTGTCACCTTGCATCCTTACATGTGATGTCCTGGCTACAATCCTGCCCGTTGTCCTTGGTTTGTGTGCAG 2348
Query 1606 -------------------------------------------------------------------------- 1605
Sbjct 2349 CTTGGTGTATTATGGCCTAACTCTGAGTGCGGGTGATCTAGGTGGAAGTATTTATGCCAACCTGGCCCTGTCTG 2422
Query 1606 -- 1605
Sbjct 2423 GC 2424
