Nucleotide Global Alignment

Description

Query:
TRCN0000471693
Subject:
XR_376327.1
Aligned Length:
3341
Identities:
1361
Gaps:
1768

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GGGCGCCTGCCACCGCCTCCTGGGCGGGAGCTTCCTGTGGCTGTCTCCGCCGCGGCCGCCCGGGGGCCGCGGAA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AGCTAGGCGGTTCCGGGCTCGAGAAGGCCCGGTTTTGGTTCGGATCCGCCGCGAGGTATCTAGCCTGCCAAGAT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GCCAGGGCCAAGACCTCGGAAGGGCCCTAAGACCAGTGGCCAGGGTGCTGAGACTGCCAAGCAGCTGGGGCTTT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TTGTGGAGTTCAACCCTGAGGACATGCTCCTGGGGGTGGATGAGACTGAAGATGATGGAGACCTGGAGGCTGAG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TTACTGGCACTCACAGGGGAAACAGCGAGCAGGAGCAGGAAGCCAGCACCCAAGGGGCAGGCTCCACTGCCCAT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GGCCCACATTGAGAAGCTGGCAGCAGACTGTATGCGAGATGTGGAGGAGGATGAAGAAGAGGAAGGGCTGGAGG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  ACGATGCAGACCTTCTGACAGAGCTGCAGGAGGTCCTGGGTGAGGATGAAGAAGCGGGTCTGCTGGACGGCAGT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GAGGCAGCAAGTCCAGACCTCTGTGAGGAGAAGACTTGGGACAACACTGAACTACCTGTAGAGCAGGCAGCCTG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CCAACAGGCAGTACCTGCTGCAGCTCAGGCTGGAGGGCCTCGGGGGCTGCAGGCTTTGCTGGAGGAACGGATCC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GTAACTACCGGGAGGCCGCAGCCAGTGCCAAGGAGGCTGGTGAAGCTGCCAAAGCCCGGCGCTGTGAGCGAGGC  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CTAAAGACTCTGCAGTCCCAGCTTGCCACTGTGAGGAAAGGCGGGAAGATCTGTGAGGATGAGATCCCACCTCC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  AGTAGCCTTGGGCAAAAGGCCCCCAGCCCCCCAGGAAAGAGCCATCAAGAACCCTGAGATAGACTCTCCAGGTC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CCTGTGCCATGGAGCCAGGCAACCTTTCCCAGCCCGAGTCCAGCCTCCCTGCCATTGCTCCCTTGCCTGATTCA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GACCCAGACCCACAAGCCCTGCTGTTAGCCCGACAGAGAGAGTACAAGGCGGCTGCTCTCGATGCCAAGCGGGC  1036

Query    1  ----------------------------ATGAGGATTGGGAAGAGATTCGGTGCTGTCCTGGAGGCCCTGGAGA  46
                                        ||||||||.|||||||||||.|||.|||||||.|||||||||||.|
Sbjct 1037  TGGAGATCTAGACCGTGCTCGGGAGCTCATGAGGATCGGGAAGAGATTTGGTACTGTCCTAGAGGCCCTGGAAA  1110

Query   47  AGGGGCAGCCCGTGGATCTGAGTGCCATGCCCCCGGCACCTGAGGATCTGAAG-----CCCCAGCAGGCTTCTC  115
            ||||.|||||.|||||.|||||||.|||||||||.|||||||.||||||||||     ||||  |||||||||.
Sbjct 1111  AGGGTCAGCCTGTGGACCTGAGTGGCATGCCCCCAGCACCTGCGGATCTGAAGGCCCTCCCC--CAGGCTTCTA  1182

Query  116  AGGCTCCCACAGCACCCTCAGTCATTCCCCCAGCCGTGGAGCGAGTGCAGCCAGTGATGGCCCCTGACGTCCCA  189
            ||||..||.|||||.||..||.|.|..|||||||.||.||||.|.|||||||||||||||||.|||||.|||||
Sbjct 1183  AGGCCTCCTCAGCAACCCAAGGCCTGTCCCCAGCAGTAGAGCAAATGCAGCCAGTGATGGCCTCTGACCTCCCA  1256

Query  190  GCAACCCCAGTGGCCCCTACAGAGTC-ACAGACAGTGCTGGATGCCCTGCAGCAGAGGCTGAACAAGTACCGCG  262
            ||.|||||||||||||||.|.|||.| ||| ||||||||||||||..|.|||||.||||||||||||||.||.|
Sbjct 1257  GCCACCCCAGTGGCCCCTGCGGAGCCAACA-ACAGTGCTGGATGCTTTACAGCAAAGGCTGAACAAGTATCGTG  1329

Query  263  AGGCGGGCATCCAGGCCCGGAGTGG----TGGGGACGAGCGCAAGGCTCGGATGCATGAGCGCATTGCCAAGCA  332
            ||||.||||||||||||||    ||    ||||||.|||||||||||..|||||||.||.||||||||||||||
Sbjct 1330  AGGCAGGCATCCAGGCCCG----GGCCAATGGGGATGAGCGCAAGGCCAGGATGCACGATCGCATTGCCAAGCA  1399

Query  333  ATATCAAGATGCTATTCGAGCACACCGAGCAGGACGGAAAGTCAACTTTGCTGAATTGCCTGTTCCTCCAGGAT  406
            ||||||.||||||.|||||||.||.|..|||||||.||||||..|||||||.||.||.||||||||||||||||
Sbjct 1400  ATATCAGGATGCTGTTCGAGCTCATCAGGCAGGACAGAAAGTTGACTTTGCCGAGTTACCTGTTCCTCCAGGAT  1473

Query  407  TTCCCCCCATCCCTGGCCTGGAGTCCACTATGGGTGTTGAGGAGGACGCAGTGGCAGCGACATTGGCAGCTGCA  480
            ||||.||||||||||||||||||.|||..|..|||..||||.||||..||||||||||.||.||.|||.||||.
Sbjct 1474  TTCCTCCCATCCCTGGCCTGGAGCCCAGGAAAGGTAGTGAGCAGGATTCAGTGGCAGCAACTTTAGCAACTGCC  1547

Query  481  GAGAAACTGGCCTCTGCAGAGGATTCAGCCCCGGCTGATAAAGACGAGGACGAGGGTGAGCCCCCAGCACAGGC  554
            .|.||||||||||   ||||.|||.||||||.||..|||   |||||.||.|||.||||..|.|||||||||||
Sbjct 1548  CAAAAACTGGCCT---CAGAAGATGCAGCCCTGGTAGAT---GACGACGAGGAGAGTGACACTCCAGCACAGGC  1615

Query  555  CCCAGTGGCCAAGAAACCTGCACGGCCCACAGTCCCTTCATCCCAGCGCCTGCCTGAGCCCAGGGCCTCAAGTT  628
            ||||.||||||||||.||.||.|.|.|....|||.||.|||||||.|..|||.|||||||||.|||.|||||||
Sbjct 1616  CCCATTGGCCAAGAAGCCAGCGCAGACTCTGGTCTCTCCATCCCATCTTCTGACTGAGCCCAAGGCTTCAAGTT  1689

Query  629  CTAAGGAGTCACCGAGTCCATCTGTGCGGGAGCAGCTGGCACTGCTGGAGGCACGGAAACTGCAGTATCAGCGG  702
            ||||||||||||.||||||||||||.|||||||||.||.|||||||||||||.|||||||||||.||.|||||.
Sbjct 1690  CTAAGGAGTCACTGAGTCCATCTGTTCGGGAGCAGGTGACACTGCTGGAGGCTCGGAAACTGCAATACCAGCGA  1763

Query  703  GCAGCCCTGCAGGCCAAGCGCAGCCAGGACCTGGAGCAGGCCAAAGCCTATCTGCGGGTAGCCAAATGGCTTGA  776
            |||||.|||||.|||||||||||.|||||.||.||||||||||||.||.|..|.||.|||||.|||.|.|||||
Sbjct 1764  GCAGCTCTGCAAGCCAAGCGCAGGCAGGATCTTGAGCAGGCCAAATCCCACTTACGAGTAGCTAAAAGTCTTGA  1837

Query  777  GGCTCAGATCATCCAGGCCCGATCTGG-CAGACCTGTTGATCTGTCCA--------------------AGGTGC  829
            ||||||||||||||||||||||.|||| || |||..|||||||.||||                    ||||||
Sbjct 1838  GGCTCAGATCATCCAGGCCCGAGCTGGTCA-ACCCATTGATCTCTCCAAGGGGCCTTATGATCTGGGCAGGTGC  1910

Query  830  CTTCGCCCTTGACGGATGAGGAGGGTGACTTCATCCTCATCCACCATGAGGACCTGCGACTCTCCCAGAAGGCG  903
            ||||.||.|||||.|||||.|||||.||||||||||||||.|||||||||||.||||||||||||||||||||.
Sbjct 1911  CTTCACCGTTGACAGATGAAGAGGGGGACTTCATCCTCATTCACCATGAGGATCTGCGACTCTCCCAGAAGGCT  1984

Query  904  GAGGAGGTGTATGCCCAGCTGCAAAAAATGCTTCTGGAGCAACAAGAGAAGTGCCTGCTGTTCTCCAAGCAGTT  977
            ||||||||||||||||||||.||.||||||||.|.||||||.||||.||||||||||||.|||||||||||||.
Sbjct 1985  GAGGAGGTGTATGCCCAGCTACAGAAAATGCTCCAGGAGCAGCAAGCGAAGTGCCTGCTATTCTCCAAGCAGTA  2058

Query  978  CATGCACCAGGGCAACGTGGCTGAGACCACCCGATTTGAGAAGCTTGCTCAGGACCGCAAGAAACAGCTGGAGA  1051
            ||||||||||||.||.||||||||||||||.||.|||||||.||||||..|||||||.|||||||||||.||||
Sbjct 2059  CATGCACCAGGGAAATGTGGCTGAGACCACTCGGTTTGAGAGGCTTGCGGAGGACCGAAAGAAACAGCTTGAGA  2132

Query 1052  TCCTGCAGCTGGCCCAGGCTCAGGGCCTCGACCCTCCCACCCACCACTTTGAGTTGAAGACATTCCAGACTGTG  1125
            ||||||||||.|||||.||.||||||||.||||||||.|..||.|||||||||.||||||||||||||||||||
Sbjct 2133  TCCTGCAGCTAGCCCAAGCCCAGGGCCTTGACCCTCCTAGTCATCACTTTGAGCTGAAGACATTCCAGACTGTG  2206

Query 1126  AGGATCTTCTCAGAACTCAACAGCACAGAAATGCATCTGATCATTGTCCGGGGAATGAACCTCCCAGCCCCTCC  1199
            ||||||||||||||||||||||||||||||||||||||||||||.||.|||||||||||||||||||||||.||
Sbjct 2207  AGGATCTTCTCAGAACTCAACAGCACAGAAATGCATCTGATCATCGTGCGGGGAATGAACCTCCCAGCCCCGCC  2280

Query 1200  AGGGGTGACTCCCGATGACCTGGATGCTTTTGTGCGGTTTGAGTTTCACTACCCTAACTCGGACCAGGCTCAAA  1273
            |||.||||||||.||||||.|||||||||||||.||||||||||||||||||||||||||||||||||||||||
Sbjct 2281  AGGAGTGACTCCGGATGACTTGGATGCTTTTGTACGGTTTGAGTTTCACTACCCTAACTCGGACCAGGCTCAAA  2354

Query 1274  AAAGCAAAACAGCTGTGGTGAAGAACACAAACTCTCCAGAATTTGATCAACTCTTCAAACTAAACATCAACCGA  1347
            |||||||||||||||||||.||.||.||.||.||||||||||||||.|||.|.|||||.|||||||||||.|||
Sbjct 2355  AAAGCAAAACAGCTGTGGTAAAAAATACCAATTCTCCAGAATTTGAACAAGTTTTCAAGCTAAACATCAATCGA  2428

Query 1348  AACCACCGGGGCTTCAAGAGGGTGATCCAGAGCAAAGGCATCAAGTTTGAGATCTTCCACAAAGGGTCCTTCTT  1421
            ||||||||.|||||.|.|||.|||||||||||||||||.|||||.||||||||||||||||||||.|||||.||
Sbjct 2429  AACCACCGAGGCTTTAGGAGAGTGATCCAGAGCAAAGGAATCAAATTTGAGATCTTCCACAAAGGATCCTTTTT  2502

Query 1422  CAGAAGCGACAAGCTGGTTGGCACAGCACACCTGAAACTGGAGCGGCTGGAGAATGAGTGTGAGATCAGAGAAA  1495
            .|||||.||||||||||||||||||||||||.|||||.||||..||||||||||.|||||||||||||||||.|
Sbjct 2503  TAGAAGTGACAAGCTGGTTGGCACAGCACACTTGAAATTGGAAAGGCTGGAGAAGGAGTGTGAGATCAGAGAGA  2576

Query 1496  TTGTGGAGGTCCTGGATGGAAGGAAGCCCACCGGGGGGAAGCTGGAGGTGAAGCCGATG--------GCC----  1557
            |..|||||||..|||||||.||.||||||||.|||||||||||||||||||||..||.|        |||    
Sbjct 2577  TCATGGAGGTTTTGGATGGCAGAAAGCCCACTGGGGGGAAGCTGGAGGTGAAGGTGAGGCTTCGGGAGCCTCTG  2650

Query 1558  AGCA-CCAGGAGATGAGTCAGGCCGCGACTGTGCAGGAGA----------------------------------  1596
            |||| ||||||..||   |||.|.|..|||      ||||                                  
Sbjct 2651  AGCAGCCAGGACGTG---CAGACGGTCACT------GAGAACTGGCTGGTCCTGGAGCCTCGGGGCCTGTGAAG  2715

Query 1597  --------------------------------------------------------------------------  1596
                                                                                      
Sbjct 2716  AGGTGGACATCCTTGGTAACAGCTCACTGACCCAGCTGTGCCGGCTCAAGAGCCGTTGTACATCAGAGATGCTG  2789

Query 1597  --------------------------------------------------------------------------  1596
                                                                                      
Sbjct 2790  CTACACACGCACCAAAGACCTGATAACTAACAGTGGCCTGGGCTTTCCTCCTGCTGCCTCTCCTGGACCTTCGT  2863

Query 1597  --------------------------------------------------------------------------  1596
                                                                                      
Sbjct 2864  GGAAGCAGGCCTCCCACCCTCCCTGTGGGCGAAGACAAGGATACCCCACTGCTCTGTGCCACAGAGTCCCGTAA  2937

Query 1597  --------------------------------------------------------------------------  1596
                                                                                      
Sbjct 2938  CCGCTGCATAGTAATTGCGTACCGCTTAACCCAGCCCCCATTTGCACCATTTCTGGATGTGCCTTTCAAAGATG  3011

Query 1597  --------------------------------------------------------------------------  1596
                                                                                      
Sbjct 3012  TAACTGTAGGGATGGGAGAACTCGAGGGTGATCGGAACATCCCGTGTGGGGAGGGACAGGATTCCGTGACTCCA  3085

Query 1597  --------------------------------------------------------------------------  1596
                                                                                      
Sbjct 3086  GCTGGCCAGCGGCAGACTGTCCCGCTCAGCTGTTTTCCCTCTGCCTGTGCCTTTGTTCCTGACAGCTGCTGCAC  3159

Query 1597  --------------------------------------------------------------------------  1596
                                                                                      
Sbjct 3160  TAGCCTTTCTGCTTCCCAGAGGACTCGGGAACAGGAACGTTACTTTGGTACTATTGGTGGGAAGTAAGGGAAGG  3233

Query 1597  --------------------------------------------------------------------------  1596
                                                                                      
Sbjct 3234  TTCTCTTTGGTTTGGTCCATGTACCTAAGGTGAAAGACTGTTAATTGGGGAGAAAAAAAGGAAAAAAGAAAAAG  3307

Query 1597  -----------  1596
                       
Sbjct 3308  AAAAACTATCA  3318

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