Nucleotide Global Alignment

Description

• Query: TRCN0000473096
• Subject: XM_006505176.3
• Aligned Length: 1426
• Identities: 845
• Gaps: 449

Alignment

Query    1  ATGGCGGCGAGCGCGCTGCGAGGCCTGCCAGTGGCTGGCGGAGGCGAGAGTAGCGAGAGCGAGGATGATGGCTG  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  GGAGATTGGGTATCTCGACCGGACGTCTCAGAAATTGAAAAGGCTATTACCCATTGAAGAAAAGAAAGAAAAAT  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  TTAAGAAAGCAATGACCATCGGAGATGTTTCATTGGTCCAGGAGCTCCTAGATTCTGGCATTAGTGTAGATTCC  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  AACTTTCAGTATGGATGGACTCCCCTTATGTATGCTGCTAGTGTTGCCAATGCAGAGCTGGTTCGGGTCCTTTT  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  GGACAGAGGTGCTAATGCAAGCTTTGAGAAGGATAAGCAAAGTATTTTGATAACTGCATGTTCTGCTCATGGCT  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  CAGAGGAACAGATCTTGAAGTGTGTAGAACTACTACTTTCAAGAAATGCTGATCCAAATGTTGCTTGTAGGAGA  444
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  445  CTTATGACCCCAATCATGTATGCTGCTCGAGATGGTCACACCCAGGTTGTTGCTCTCCTTGTTGCTCATGGAGC  518
               |||||.|||||||||||||||||.|||||.|||||.||.||||||||.|||||.|||||.|||||.|||||
Sbjct    1  ---ATGACGCCAATCATGTATGCTGCCCGAGACGGTCATACTCAGGTTGTGGCTCTGCTTGTGGCTCACGGAGC  71

Query  519  AGAAGTTAATACCCAGGATGAGAATGGTTACACTGCTTTAACGTGGGCAGCACGTCAGGGTCATAAAAATATAG  592
            .||||||||..|||||||||||||||||||.|||||.|||||.|||||||||||.|||||||||||||||.||.
Sbjct   72  CGAAGTTAACGCCCAGGATGAGAATGGTTATACTGCCTTAACATGGGCAGCACGGCAGGGTCATAAAAATGTAA  145

Query  593  TTTTGAAGTTGCTTGAACTTGGAGCTAATAAAATGCTACAAACCAAAGATGGAAAGATGCCAAGTGAGATTGCA  666
            ||.||||||||||||||||.||||||||||||||||||||.|||||||||||.|..|..|||||.|||||||||
Sbjct  146  TTCTGAAGTTGCTTGAACTGGGAGCTAATAAAATGCTACAGACCAAAGATGGCAGAACACCAAGCGAGATTGCA  219

Query  667  AAAAGAAACAAACATCATGAGATCTTCAACTTACTTTCTTTTACTTTAAATCCATTGGAAGGAAAACTTCAACA  740
            ||||||||.|||||||.|||||||||||||||.||||||.|.|||.|||||||||||||||||||||||||.||
Sbjct  220  AAAAGAAATAAACATCTTGAGATCTTCAACTTTCTTTCTCTGACTCTAAATCCATTGGAAGGAAAACTTCAGCA  293

Query  741  GCTAACTAAAGAAGACACTATTTGTAAAATATTGACAACAGATTCTGATAGAGAAAAAGATCACATTTTTAGTT  814
            ||||||.||||||||.||.|||||||||.|.|||.|.|||||||||||||.|||||||||||||||.|||||..
Sbjct  294  GCTAACCAAAGAAGAGACCATTTGTAAACTGTTGGCCACAGATTCTGATAAAGAAAAAGATCACATATTTAGCC  367

Query  815  CATATACAGCATTTGGAGATCTGGAAGTATTTTTACATGGTCTTGGACTTGAACATATGACAGATTTACTAAAG  888
            |.||||||||.|||||||||||||||.|||||||||||||.|||||||||||||||||||||||.|.|.|||||
Sbjct  368  CGTATACAGCGTTTGGAGATCTGGAAATATTTTTACATGGCCTTGGACTTGAACATATGACAGACTCATTAAAG  441

Query  889  GAAAGGGATATAACGTTAAGACATCTTTTGACCATGAGGGAAGATGAATTTACAAAGAATGGAATTACCAGTAA  962
            ||||.|||||||||.||||||||.|||.|||||||||.|.||||.||..|||||||||||||||||.|.|||||
Sbjct  442  GAAAAGGATATAACTTTAAGACACCTTCTGACCATGAAGAAAGACGAGCTTACAAAGAATGGAATTGCTAGTAA  515

Query  963  AGACCAGCAGAAAATTCTGGCTGCTCTTAAAGAACTACAGGTAGAAGAGATACAATTTGGAGAGCTATCTGAAG  1036
            |||.||.||||||||..|||||||||||||.||||||.|.||||||||||||.|.||||||.|..||.||||||
Sbjct  516  AGATCAACAGAAAATCTTGGCTGCTCTTAAGGAACTAGAAGTAGAAGAGATAAATTTTGGAAAATTACCTGAAG  589

Query 1037  AGACAAAGTTGGAAATCAGTGGTGATGAGTTCCTCAACTTTCTTCTCAAATTAAATAAACAGTGTGGCCATTTA  1110
            .|||||||||||||||||||||||||||||||||||||||||||.|.|||||||||||.|||||||||||||||
Sbjct  590  TGACAAAGTTGGAAATCAGTGGTGATGAGTTCCTCAACTTTCTTTTGAAATTAAATAAGCAGTGTGGCCATTTA  663

Query 1111  ATAACAGCTGTACAGAATGTTATTACTGAGTTACCTGTAAATTCTCAAAAGATAACACTGGAATGGGCTTCTCC  1184
            ||.||||||||.||||||.|.|||||.|||||.||||||||||||||.||||||..||||||.||||||||| |
Sbjct  664  ATCACAGCTGTGCAGAATATCATTACCGAGTTGCCTGTAAATTCTCACAAGATAGTACTGGAGTGGGCTTCT-C  736

Query 1185  CCAG-AATTTTACTTCAGTTTGTGAAGAATTGGTTAATAATGTTGAAGATTTGAGTGAAAAGGTCTGCAAACTA  1257
            |||| ||||||||||||||||||||||||.||||||.|||||||||||||||||.||||.|||||||||.|||.
Sbjct  737  CCAGAAATTTTACTTCAGTTTGTGAAGAACTGGTTAGTAATGTTGAAGATTTGAATGAAGAGGTCTGCAGACTG  810

Query 1258  AAAGACCTAATTCAAAAGTTGCAAAATGAACGGGAAAATGATCCAACTCATATACAATTAAGGGAAGAAGTATC  1331
            ||.||..|.|||||.|||.||||.|||||.|||||||||||.|||||||||||.|.|.||...|||||.||.||
Sbjct  811  AAGGAGTTGATTCAGAAGATGCAGAATGAGCGGGAAAATGACCCAACTCATATCCCACTAGTAGAAGAGGTCTC  884

Query 1332  TACATGGAATAGTAGAATTTTGAAGAGGACAGCTATTACCATATGCGGATTCGGTTTTCTTCTTTTCATTTGCA  1405
            |||||||||.|.|.|||||.||||||||.||||..||||..|.||.||||||||..|.||.||||||||..|||
Sbjct  885  TACATGGAAGACTCGAATTCTGAAGAGGTCAGCAGTTACAGTGTGTGGATTCGGGCTGCTGCTTTTCATCGGCA  958

Query 1406  AGCTAACTTTCCAGAGGAAA  1425
            ||||||||||.|||||.|||
Sbjct  959  AGCTAACTTTGCAGAGAAAA  978