Nucleotide Global Alignment
Description
- Query:
- TRCN0000474337
- Subject:
- NR_110524.2
- Aligned Length:
- 5338
- Identities:
- 1224
- Gaps:
- 4114
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTCAGCCGCCCTCGCCGCCGCGGTGCGCTGGCTGCAGGAAGCCGCCGCGCCGCCGCTTTTGTTGTCAGGGACCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGCGAGGAGCGCCGCTCGCCGGCCGCCGCCACCCTCTCTCGCTGCAGCCTGCTGTGCGCTGCACGGCCTGGGGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCGGGAGCCCCGCCCGCTCTGCCCATGAGGGGGCCCCGCGACCACCGCTGCTTCCAGCCCGGGGCGGCGCGGCG 222
Query 1 -----------------------------------------------------------------------ATG 3
|||
Sbjct 223 CTGAGGCGGCGGCGGCGGCGCTGCCCCCTCTGCGGGAAGCGGGCGGCCCCGGCCGCCTCCGCGAGGGCACCATG 296
Query 4 GAGGTGAATGCAGGAGGTGTGATTGCCTATATCAGTTCTTCCAGCTCAGCCTCAAGCCCTGCCTCTTGTCACAG 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GAGGTGAATGCAGGAGGTGTGATTGCCTATATCAGTTCTTCCAGCTCAGCCTCAAGCCCTGCCTCTTGTCACAG 370
Query 78 TGAGGGTTCTGAGAATAGTTTCCAGTCCTCCTCCTCTTCTGTTCCATCTTCTCCAAATAGCTCTAATTCTGATA 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TGAGGGTTCTGAGAATAGTTTCCAGTCCTCCTCCTCTTCTGTTCCATCTTCTCCAAATAGCTCTAATTCTGATA 444
Query 152 CCAATGGTAATCCCAAGAATGGTGATCTCGCCAATATTGAAGGCATCTTGAAGAATGATCGAATAGATTGTTCT 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CCAATGGTAATCCCAAGAATGGTGATCTCGCCAATATTGAAGGCATCTTGAAGAATGATCGAATAGATTGTTCT 518
Query 226 ATGAAAACAAGCAAATCGAGTGCACCTGGGATGACAAAAAGTCATAGTGGTGTGACAAAATTTAGTGGCATGGT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 ATGAAAACAAGCAAATCGAGTGCACCTGGGATGACAAAAAGTCATAGTGGTGTGACAAAATTTAGTGGCATGGT 592
Query 300 TCTACTGTGTAAAGTCTGTGGGGATGTGGCGTCAGGATTCCACTATGGAGTTCATGCTTGCGAAGGCTGTAAGG 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TCTACTGTGTAAAGTCTGTGGGGATGTGGCGTCAGGATTCCACTATGGAGTTCATGCTTGCGAAGGCTGTAAGG 666
Query 374 GTTTCTTTCGGAGAAGTATTCAACAAAACATCCAGTACAAGAAGTGCCTGAAGAATGAAAACTGTTCTATAATG 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GTTTCTTTCGGAGAAGTATTCAACAAAACATCCAGTACAAGAAGTGCCTGAAGAATGAAAACTGTTCTATAATG 740
Query 448 AGAATGAATAGGAACAGATGTCAGCAATGTCGCTTCAAAAAGTGTCTGTCTGTTGGAATGTCAAGAGATGCTGT 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AGAATGAATAGGAACAGATGTCAGCAATGTCGCTTCAAAAAGTGTCTGTCTGTTGGAATGTCAAGAGATGCTGT 814
Query 522 TCGGTTTGGTCGTATTCCTAAGCGTGAAAAACAGAGGATGCTAATTGAAATGCAAAGTGCAATGAAGACCATGA 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TCGGTTTGGTCGTATTCCTAAGCGTGAAAAACAGAGGATGCTAATTGAAATGCAAAGTGCAATGAAGACCATGA 888
Query 596 TGAACAGCCAGTTCAGTGGTCACTTGCAAAATGACACATTAGTAGAACATCATGAACAGACAGCCTTGCCAGCC 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TGAACAGCCAGTTCAGTGGTCACTTGCAAAATGACACATTAGTAGAACATCATGAACAGACAGCCTTGCCAGCC 962
Query 670 CAGGAACAGCTGCGACCCAAGCCCCAACTGGAGCAAGAAAACATCAAAAGCTCTTCTCCTCCATCTTCTGATTT 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CAGGAACAGCTGCGACCCAAGCCCCAACTGGAGCAAGAAAACATCAAAAGCTCTTCTCCTCCATCTTCTGATTT 1036
Query 744 TGCAAAGGAAGAAGTGATTGGCATGGTGACCAGAGCTCACAAGGATACCTTTATGTATAATCAAGAGCAGCAAG 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 TGCAAAGGAAGAAGTGATTGGCATGGTGACCAGAGCTCACAAGGATACCTTTATGTATAATCAAGAGCAGCAAG 1110
Query 818 AAAACTCAGCTGAGAGCATGCAGCCCCAGAGAGGAGAACGGATTCCCAAGAACATGGAGCAATATAATTTAAAT 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 AAAACTCAGCTGAGAGCATGCAGCCCCAGAGAGGAGAACGGATTCCCAAGAACATGGAGCAATATAATTTAAAT 1184
Query 892 CATGATCATTGCGGCAATGGGCTTAGCAGCCATTTTCCCTGTAGTGAGAGCCAGCAGCATCTCAATGGACAGTT 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 CATGATCATTGCGGCAATGGGCTTAGCAGCCATTTTCCCTGTAGTGAGAGCCAGCAGCATCTCAATGGACAGTT 1258
Query 966 CAAAGGGAGGAATATAATGCATTACCCAAATGGTCATGCCATTTGTATTGCAAATGGACATTGTATGAACTTCT 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CAAAGGGAGGAATATAATGCATTACCCAAATGGTCATGCCATTTGTATTGCAAATGGACATTGTATGAACTTCT 1332
Query 1040 CCAATGCTTATACTCAAAGAGTATGTGATAGAGTTCCGATAGATGGATTTTCTCAGAATGAGAACAAGAATAGT 1113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 CCAATGCTTATACTCAAAGAGTATGTGATAGAGTTCCGATAGATGGATTTTCTCAGAATGAGAACAAGAATAGT 1406
Query 1114 TACCTGTGCAACACTGGAGGAAGAATGCATCTGTACAGTGTTCATATTCAGCCAAAATTTCACCAAAAACAGCA 1187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 TACCTGTGCAACACTGGAGGAAGAATGCATCTGTACAGTGTTCATATTCAGCCAAAATTTCACCAAAAACAGCA 1480
Query 1188 GTACCACACCATTTCCAGTTTAAACCATGAAGTCCTT------------------------------------- 1224
|||||||||||||||||||||||||||||||||||||
Sbjct 1481 GTACCACACCATTTCCAGTTTAAACCATGAAGTCCTTTGATAGTGCTTGGTATTTTCTACTGACAGGTTTGTCC 1554
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 1555 AATGAGTAAGTCTCCATATGTGGATCCTCATAAATCAGGACATGAAATCTGGGAAGAATTTTCGATGAGCTTCA 1628
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 1629 CTCCAGCAGTGAAAGAAGTGGTGGAATTTGCAAAGCGTATTCCTGGGTTCAGAGATCTCTCTCAGCATGACCAG 1702
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 1703 GTCAACCTTTTAAAGGCTGGGACTTTTGAGGTTTTAATGGTACGGTTCGCATCATTATTTGATGCAAAGGAACG 1776
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 1777 TACTGTCACCTTTTTAAGTGGAAAGAAATATAGTGTGGATGATTTACACTCAATGGGAGCAGGGGATCTGCTAA 1850
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 1851 ACTCTATGTTTGAATTTAGTGAGAAGCTAAATGCCCTCCAACTTAGTGATGAAGAGATGAGTTTGTTTACAGCT 1924
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 1925 GTTGTCCTGGTATCTGCAGATCGATCTGGAATAGAAAACGTCAACTCTGTGGAGGCTTTGCAGGAAACTCTCAT 1998
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 1999 TCGTGCACTAAGGACCTTAATAATGAAAAACCATCCAAATGAGGCCTCTATTTTTACAAAACTGCTTCTAAAGT 2072
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2073 TGCCAGATCTTCGATCTTTAAACAACATGCACTCTGAGGAGCTCTTGGCCTTTAAAGTTCACCCTTAAGGCCTT 2146
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2147 TGTTTATTTAAACATGAACTGATGGTAACTGTACATTTTGTGCTAAAATGCATATTTATATGTGTATACCATAT 2220
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2221 GTGGAGATAGAAAAGACCTTTAAGACAATAAAAGATTGTAGGCTATCTCTGTAATCATGCAATAGCTGTTCGGA 2294
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2295 TTGAGAACTCTTCAGCCATGATTAGACGTTGACTGCATCTCCCTGATAGACCAATCAGCTGTGTCGCACTTAAA 2368
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2369 CTGGAGAAGTTACACTGAAGTATAATCACACTGAATGTTAGACTTTTTCATCTGCCAAAACCAAAAACCATTTT 2442
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2443 GATCTCCCTGTGGTTATCAATATAACGCACAATCACAAGTGTATGAGGACTTAGAAATTAATCCTTTGTGGTAG 2516
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2517 GAGTTCTGTTGAATGATGGAAATCTTATTACTACCACAAGACTATTTGATCTGGTAATTGGAGACTTCGGGATT 2590
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2591 TAGGAGATCTCCATGTCTGTATTTACTCTACCACTGCTAAAGTGTGTGGTCCTGGGTAGTTTACTTGCTTGCGG 2664
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2665 AAAATGAGAATTGATGGTGTCCCCAATGCCCCACCTCACAGAGTTACTAAAAAATGTCTGTAAAGCATATTTAC 2738
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2739 CTCTTGGGAGATAGGCACTATGTAAATAAGGTAAAATTTCTGTTATTACAATTATTCATAATAATATTCTTTTC 2812
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2813 TTATTTCTAAGCCTTTCTGGGAAATCATTTCAGTCCACACCAACCATATTATTCAGGGTTCCTGCCATATGTGT 2886
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2887 GGGGTATCCTACTGATACACACGTATTCAAAGTTTATGGGTACAACAAAGACATAGTACATGTACATAATATGT 2960
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2961 ATGTGAATATAGTTAAATATATTTCTTCACAATATTTTAAACTGTGAAGAACTTTATCATACAGGAAACTTAAA 3034
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3035 ACAAGAGGTGTCAAAAGACCCAAATTAGGTGCATTTTACTTGTTTATGATGGCATAACCATTGCTTTAAAATGT 3108
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3109 TTAGACAGTAGAATATTGAATTTATGCTCTATTTTTGTTTATTTAAGCAACACTTAATGTAAAAGTGCAACAGG 3182
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3183 CAATTGAATCCAAATTTCAACGACAAAAAAAAAAAACATGTATTTTAGAGTTCATCTTTGGCAAAATCTTTGGT 3256
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3257 TCAGGGTACTAGTTGTTTAAAAGTTGATTCATATTCTTACCTTGTGCTGAGAAAGGTTGCATTGCTGCCCCTTA 3330
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3331 TACACATGCTGCAGCTTGATGTTAAAGAATTTTTATTCTTTCTGAAGAACTAATTAATGTTTAAAGCAACTGTT 3404
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3405 TAATATGATGGCATGTGTGTGTGTGCGTGCGTGTGTATGTTCTGAGTCCACTTCTTTTTTCCTAAATAACACTA 3478
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3479 CAGGGATTTTGTCATATTAGATTTAATTTATAATTTGAAAAATCATCTAGTGTGTGACCTACAGGCTTAGAAAT 3552
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3553 GGTATAGTCAAAGACATTTTATCCACATTTCTAATAGTGGACTTGATTAAGTAGATAAGATCAGCATCTGTTTA 3626
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3627 TGGTAGTAGGAGAAATAGCCAAAGTTGAGGATTTTATGTATGTTTTCCTGTTTACCTGGAAAATAGCAATTAAT 3700
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3701 TGGATTTTTTGGTAAAGATTGCCTTCTGTATAATGTTTGGATTATATAAAATTGCAAAAATGATAACAGCCCGC 3774
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3775 TTTACTGTACTAAGCCTGTTACTTTCATGACGTGTGAGCAGAATGCCTTATTTTGTAATCTTGTTTAACTTGTT 3848
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3849 GCTACTGGGACTTGATTTACTGTGGCACTAGTTAAGTAAGTTAAAAAAAAGTTAAACCCTCTCATTATTAAAGA 3922
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3923 GGAAAGGCGATGGTGATGTCTGTAGTACAATATAAACCATAATTGTGATTTACCTTAAGTAGGTATAACTCTTA 3996
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3997 TGGGATATACAGTATAGTTTTTGTGAATCTTTACATGATAGCATTATCTTTTTATAATTTTTTTTCCTAAGATA 4070
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 4071 AACAAATGCATAGTTTTCTTCTATGGGTGATAGAAACAGCTTTTTGAAGTAATGAAAACCTCAAAAGATCATGT 4144
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 4145 TGATTCTTAATTTTTGCCTTTTGCATAAGCCTCTTTATAACATGTATCTTTAAAACAATTAAGTCTTTAGGAAT 4218
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 4219 GTGTAACCAGAACTATGTTAGTATTGCTTATAAAACTTTAGTTAGGTTCAATATATACATATATACATCTCTAT 4292
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 4293 ATAGGTATATAGATTTGCATTTTGTCTTGTAAAATTTTATTTGAATAAATTCTTCCTGTAGGTAATGGGAAACA 4366
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 4367 AAATTAATAGTTCATATGTCACTCATAGCATTTCTATATTTGAAAGTAGCCCAATATAAAACTTTTGATTCTAA 4440
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 4441 AATTAAACCAGCAGCCTATTACAAGCACATTCTTTGATTGAGTCATTGGTTATAAACTTACTAAATGCAGAGAA 4514
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 4515 AGCAGCCAATTTAGGAAACTTCTGAGTTGGTGGGACACTGTTGATTAATAATGTACTGTATGAATTAAGTGATG 4588
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 4589 CTTTAACTTTGATTTTACATTTTAAAGTTAAAATGTGGGCATTATGTCAGCAAACTTAAGGGCATTATGTCAGC 4662
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 4663 AAGCTAAAACATTTTTTTTCCTGTGCTTTTAATGTATCTCTTTACATGATCTGAGAGAGGATTCAAGTTGATAG 4736
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 4737 AAATAGCTGAGGGGAAAAGGGGGAACATCTTGGGATGAAGCTTGTCCTTATGGTGATGGTTTAATTACAGATTA 4810
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 4811 AAAAATTAGAAGGAAATTTCAGTGGATTAAGTGTATAGCTTTCATATCTACATTTCAAGAAATTACCATTGTAA 4884
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 4885 CTTGATAAGAGATGATTTATTTTATGTAAACATCTTTGCAAAGCAAGGTGTAGCAGCTCAGCTAGATTTATTAC 4958
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 4959 TGTGCACGAAAGTAAATACCTATCTCAATTATTCTTTTTCTTTTCCAATATAAAGTTTGCTGAATGTACAAGAA 5032
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 5033 GAGTTTATCACTTAGGATATAGAATTTTTTTAGGGGTTGGGGGAGGGGATCTGTTAGGAAACTGTTACCTATAA 5106
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 5107 ACAAAGATTGACTGGATTCGATCCAAAAGATAAAACTTGAAGCTATTCTGGAACTAACATGGAAAAATGAAATG 5180
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 5181 GCTATTGTTTAAAAAAATGATAGAAATACATTGTTGATGGGATATGAGTTAAGTTTATTTTCTACAAACTGTAA 5254
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 5255 TTGATGAGGACATGGATAATATCTTCATGTTTCTGAGAAGTAATCTGTATGTGGGGGGAGGGGATAATAAATAT 5328
Query 1225 ---------- 1224
Sbjct 5329 TTCTAACCAA 5338
