Nucleotide Global Alignment
Description
- Query:
- TRCN0000475115
- Subject:
- XM_011244342.2
- Aligned Length:
- 1738
- Identities:
- 1151
- Gaps:
- 443
Alignment
Query 1 ATGCCTTCTGCATCCTGTGATACACTACTGGATGACATCGAAGATATCGTGTCTCAGGAAGATTCAAAACCACA 74
|||||||||||.||.||||||..|||.|||||||||||.|||||||||.|.||.||||||||||||||.|||||
Sbjct 1 ATGCCTTCTGCGTCTTGTGATGTACTGCTGGATGACATAGAAGATATCATATCACAGGAAGATTCAAAGCCACA 74
Query 75 AGATAGGCATTTTGTAAGAAAGGATGTTGTCCCGAAGGTACGAAGGCGAAATACCCAAAAATATTTGCAAGAGG 148
.||.||.||.||...|||||||.||||..|.||.||.|||||||||||.||||||||||||||||||||| |
Sbjct 75 GGACAGACAGTTCTCAAGAAAGCATGTGTTTCCTAAAGTACGAAGGCGGAATACCCAAAAATATTTGCAA---G 145
Query 149 AAGAAAACAGTCCACCAAGTGACAGCACTATTCCAGGCATACAGAAAATTTGGATACGAACATGGGGTTGTTCT 222
||||...|||.||||||||||||||||||||||||||||||||||||||||||||.|||||||||||.||.||.
Sbjct 146 AAGAGCCCAGGCCACCAAGTGACAGCACTATTCCAGGCATACAGAAAATTTGGATCCGAACATGGGGCTGCTCA 219
Query 223 CATAATAATTCAGATGGAGAATATATGGCTGGACAGCTAGCTGCTTATGGCTATAAAATTACAGAAAATGCATC 296
|||||||||||.|||||||||||.||||||||||||||.|||||.||||||||||||||||||||.||||||||
Sbjct 220 CATAATAATTCGGATGGAGAATACATGGCTGGACAGCTTGCTGCCTATGGCTATAAAATTACAGAGAATGCATC 293
Query 297 CGATGCAGATTTATGGCTCCTGAACAGTTGCACTGTAAAAAACCCAGCTGAAGACCACTTTAGAAACTCAATTA 370
.|||||||||.|.|||||||||||||||||.|||||.|||||.|||||||||||||||||||||||||||||.|
Sbjct 294 AGATGCAGATCTGTGGCTCCTGAACAGTTGTACTGTGAAAAATCCAGCTGAAGACCACTTTAGAAACTCAATCA 367
Query 371 AAAAAGCTCAAGAGGAGAACAAGAAAATCGTACTGGCTGGATGCGTTCCTCAAGCCCAGCCTCGCCAGGACTAC 444
|||||||||||||.|||||.||||||.|.||.||.|||||.||.|||||.||||||||||||||.|||||||||
Sbjct 368 AAAAAGCTCAAGAAGAGAATAAGAAAGTTGTCCTCGCTGGCTGTGTTCCCCAAGCCCAGCCTCGTCAGGACTAC 441
Query 445 CTTAAGGGACTGAGTATCATTGGGGTTCAGCAGATAGATCGTGTGGTAGAAGTTGTGGAGGAGACAATTAAAGG 518
||.||.||||||||.|||||.|||||||||||||||||||||||||||||||||||||||||.|||||.|||||
Sbjct 442 CTCAAAGGACTGAGCATCATCGGGGTTCAGCAGATAGATCGTGTGGTAGAAGTTGTGGAGGAAACAATAAAAGG 515
Query 519 TCACTCTGTGAGACTGCTGGGTCAGAAAAAGGATAATGGAAGGCGGCTTGGG-GGAGCACGATTGGATTTGCCG 591
||||||.|||||.||.|||||.|||||.||.||.||.||.|.|| ||||||| |||||.|||.|||||||||||
Sbjct 516 TCACTCAGTGAGGCTCCTGGGCCAGAAGAAAGACAACGGGAAGC-GCTTGGGTGGAGCTCGACTGGATTTGCCG 588
Query 592 AAGATTAGGAAGAATCCACTGATAGAAATCATTTCCATCAATACCGGGTGTCTCAATGCTTGTACCTACTGCAA 665
|||||.||.||||||||.|||||||||||||||||||||||.||.|||||||||||||||||||||||||||||
Sbjct 589 AAGATCAGAAAGAATCCGCTGATAGAAATCATTTCCATCAACACGGGGTGTCTCAATGCTTGTACCTACTGCAA 662
Query 666 AACTAAACACGCCAGAGGAAATTTGGCCAGTTATCCAATTGATGAACTAGTAGATAGAGCCAAACAATCTTTTC 739
|||||||||||||||||||||..|||||||.|||||.||||||||.||.||.||.||||||||.|||||.||||
Sbjct 663 AACTAAACACGCCAGAGGAAACCTGGCCAGCTATCCCATTGATGAGCTTGTGGAGAGAGCCAAGCAATCCTTTC 736
Query 740 AAGAGGGTGTTTGTGAGATATGGTTGACCAGTGAAGACACGGGGGCTTATGGCAGAGATATTGGCACCAATCTC 813
|||||||||||||||||||||||.|||||||.||.|||||.|||||.|||||||||||.||||||||..|||||
Sbjct 737 AAGAGGGTGTTTGTGAGATATGGCTGACCAGCGAGGACACCGGGGCCTATGGCAGAGACATTGGCACAGATCTC 810
Query 814 CCCACACTCCTGTGGAAACTGGTTGAAGTGATTCCTGAGGGAGCAATGCTGAGGCTTGGCATGACAAATCCGCC 887
|||||||||||||||||..||||.||||||||||||||||||||.|||||||||||.||||||||||||||.||
Sbjct 811 CCCACACTCCTGTGGAAGTTGGTGGAAGTGATTCCTGAGGGAGCCATGCTGAGGCTGGGCATGACAAATCCACC 884
Query 888 CTATATTTTAGAGCATCTGGAGGAAATGGCAAAAATCCTTAATCACCCCAGAGTCTACGCTTTTCTGCACATAC 961
.|||||||||||.||||||||||||||||||||||||||.||.||.|||||||||||||||||.||.|||||.|
Sbjct 885 ATATATTTTAGAACATCTGGAGGAAATGGCAAAAATCCTCAACCATCCCAGAGTCTACGCTTTCCTCCACATCC 958
Query 962 CAGTCCAGTCTGCCTCCGACAGCGTACTCATGGAAATGAAAAGAGAATACTGTGTGGCTGACTTCAAAAGAGTA 1035
||||.|||||.|||||.|||||.||.||||||||.|||||.|||||.|||||.|||||.||||||||||||||.
Sbjct 959 CAGTGCAGTCCGCCTCTGACAGTGTGCTCATGGACATGAAGAGAGAGTACTGCGTGGCCGACTTCAAAAGAGTC 1032
Query 1036 GTGGATTTTCTGAAAGAGAAAGTTCCTGGAATAACTATTGCTACAGATATTATCTGTGGTTTTCCTGGAGAAAC 1109
|||||||||||.||.|||||.||||||||||||||.||||||||.|||||||||||||||||||||||||||||
Sbjct 1033 GTGGATTTTCTCAAGGAGAAGGTTCCTGGAATAACGATTGCTACGGATATTATCTGTGGTTTTCCTGGAGAAAC 1106
Query 1110 AGATCAGGATTTTCAAGAAACAGTGAAACTTGTTGAAGAGTACAAATTCCCAAGCCTGTTTATTAACCAATTTT 1183
.|||||||||||||||||||||||||||||||||||||||||||||||.||||||||.||.||.|||||.||.|
Sbjct 1107 CGATCAGGATTTTCAAGAAACAGTGAAACTTGTTGAAGAGTACAAATTTCCAAGCCTCTTCATCAACCAGTTCT 1180
Query 1184 ACCCAAGACCAGGAACTCCTGCTGCAAAAATGGAACAAGTTCCAGCACAAGTGAAAAAGCAAAGGACAAAAGAT 1257
|.||||||||.||||||||||||||||||...||.||.|||||||||||.||||||||.|||||||||||||||
Sbjct 1181 ATCCAAGACCCGGAACTCCTGCTGCAAAAGCCGAGCAGGTTCCAGCACATGTGAAAAAACAAAGGACAAAAGAT 1254
Query 1258 CTTTCTCGGGTGTTTCATTCTTACAGTCCATATGATCACAAGATTGGTGAAAGACAACAAGTGTTAGTAACAGA 1331
||||||||||||||||||||.||||.||||||.|||||||||
Sbjct 1255 CTTTCTCGGGTGTTTCATTCCTACAATCCATACGATCACAAG-------------------------------- 1296
Query 1332 AGAATCTTTTGATTCCAAGTTTTATGTTGCACACAATCAATTCTATGAGCAGGTTTTAGTGCCAAAGAACCCTG 1405
Sbjct 1297 -------------------------------------------------------------------------- 1296
Query 1406 CGTTCATGGGGAAGATGGTTGAAGTGGACATCTATGAATCAGGCAAACATTTTATGAAAGGGCAGCCAGTATCT 1479
Sbjct 1297 -------------------------------------------------------------------------- 1296
Query 1480 GATGCCAAAGTGTACACGCCCTCCATCAGCAAACCGCTAGCAAAGGGAGAAGTCTCGGGTTTGACAAAGGACTT 1553
Sbjct 1297 -------------------------------------------------------------------------- 1296
Query 1554 CAGAAATGGGCTTGGGAACCAGCTGAGTTCAGGATCCCACACCTCTGCTGCATCTCAGTGTGACTCAGCGAGTT 1627
Sbjct 1297 -------------------------------------------------------------------------- 1296
Query 1628 CCAGAATGGTGCTGCCCATGCCAAGGCTACATCAAGACTGTGCGCTGAGGATGTCCGTGGGCTTGGCTCTGCTG 1701
Sbjct 1297 -------------------------------------------------------------------------- 1296
Query 1702 GGTCTTCTTTTTGCTTTTTTTGTCAAGGTCTATAAT 1737
Sbjct 1297 ------------------------------------ 1296
