Nucleotide Global Alignment

Description

• Query: TRCN0000475115
• Subject: XR_926267.2
• Aligned Length: 3723
• Identities: 1726
• Gaps: 1987

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AAATAAACGTGGCGGGACGTATGTGTCATGGCGCTCTCCATCTAAAGTCTGTGCAGCTTCCGGAGAGTGGCGGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TTGATTTTCTCACTTTGGACTGGTTTTTACTTCCCGACTTCTGGACTCATCTTTCAAGAGGACTTTAGACTAAT  148

Query    1  -------------------ATGCCTTCTGCATCCTGTGATACACTACTGGATGACATCGAAGATATCGTGTCTC  55
                               |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  TGCAGATAATTAAGAGAATATGCCTTCTGCATCCTGTGATACACTACTGGATGACATCGAAGATATCGTGTCTC  222

Query   56  AGGAAGATTCAAAACCACAAGATAGGCATTTTGTAAGAAAGGATGTTGTCCCGAAGGTACGAAGGCGAAATACC  129
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  AGGAAGATTCAAAACCACAAGATAGGCATTTTGTAAGAAAGGATGTTGTCCCGAAGGTACGAAGGCGAAATACC  296

Query  130  CAAAAATATTTGCAAGAGGAAGAAAACAGTCCACCAAGTGACAGCACTATTCCAGGCATACAGAAAATTTGGAT  203
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  CAAAAATATTTGCAAGAGGAAGAAAACAGTCCACCAAGTGACAGCACTATTCCAGGCATACAGAAAATTTGGAT  370

Query  204  ACGAACATGGGGTTGTTCTCATAATAATTCAGATGGAGAATATATGGCTGGACAGCTAGCTGCTTATGGCTATA  277
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  ACGAACATGGGGTTGTTCTCATAATAATTCAGATGGAGAATATATGGCTGGACAGCTAGCTGCTTATGGCTATA  444

Query  278  AAATTACAGAAAATGCATCCGATGCAGATTTATGGCTCCTGAACAGTTGCACTGTAAAAAACCCAGCTGAAGAC  351
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  AAATTACAGAAAATGCATCCGATGCAGATTTATGGCTCCTGAACAGTTGCACTGTAAAAAACCCAGCTGAAGAC  518

Query  352  CACTTTAGAAACTCAATTAAAAAAGCTCAAGAGGAGAACAAGAAAATCGTACTGGCTGGATGCGTTCCTCAAGC  425
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  CACTTTAGAAACTCAATTAAAAAAGCTCAAGAGGAGAACAAGAAAATCGTACTGGCTGGATGCGTTCCTCAAGC  592

Query  426  CCAGCCTCGCCAGGACTACCTTAAGGGACTGAGTATCATTGGGGTTCAGCAGATAGATCGTGTGGTAGAAGTTG  499
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CCAGCCTCGCCAGGACTACCTTAAGGGACTGAGTATCATTGGGGTTCAGCAGATAGATCGTGTGGTAGAAGTTG  666

Query  500  TGGAGGAGACAATTAAAGGTCACTCTGTGAGACTGCTGGGTCAGAAAAAGGATAATGGAAGGCGGCTTGGGGGA  573
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  TGGAGGAGACAATTAAAGGTCACTCTGTGAGACTGCTGGGTCAGAAAAAGGATAATGGAAGGCGGCTTGGGGGA  740

Query  574  GCACGATTGGATTTGCCGAAGATTAGGAAGAATCCACTGATAGAAATCATTTCCATCAATACCGGGTGTCTCAA  647
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  GCACGATTGGATTTGCCGAAGATTAGGAAGAATCCACTGATAGAAATCATTTCCATCAATACCGGGTGTCTCAA  814

Query  648  TGCTTGTACCTACTGCAAAACTAAACACGCCAGAGGAAATTTGGCCAGTTATCCAATTGATGAACTAGTAGATA  721
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TGCTTGTACCTACTGCAAAACTAAACACGCCAGAGGAAATTTGGCCAGTTATCCAATTGATGAACTAGTAGATA  888

Query  722  GAGCCAAACAATCTTTTCAAGAGGGTGTTTGTGAGATATGGTTGACCAGTGAAGACACGGGGGCTTATGGCAGA  795
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  GAGCCAAACAATCTTTTCAAGAGGGTGTTTGTGAGATATGGTTGACCAGTGAAGACACGGGGGCTTATGGCAGA  962

Query  796  GATATTGGCACCAATCTCCCCACACTCCTGTGGAAACTGGTTGAAGTGATTCCTGAGGGAGCAATGCTGAGGCT  869
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  GATATTGGCACCAATCTCCCCACACTCCTGTGGAAACTGGTTGAAGTGATTCCTGAGGGAGCAATGCTGAGGCT  1036

Query  870  TGGCATGACAAATCCGCCCTATATTTTAGAGCATCTGGAGGAAATGGCAAAAATCCTTAATCACCCCAGAGTCT  943
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TGGCATGACAAATCCGCCCTATATTTTAGAGCATCTGGAGGAAATGGCAAAAATCCTTAATCACCCCAGAGTCT  1110

Query  944  ACGCTTTTCTGCACATACCAGTCCAGTCTGCCTCCGACAGCGTACTCATGGAAATGAAAAGAGAATACTGTGTG  1017
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  ACGCTTTTCTGCACATACCAGTCCAGTCTGCCTCCGACAGCGTACTCATGGAAATGAAAAGAGAATACTGTGTG  1184

Query 1018  GCTGACTTCAAAAGAGTAGTGGATTTTCTGAAAGAGAAAGTTCCTGGAATAACTATTGCTACAGATATTATCTG  1091
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  GCTGACTTCAAAAGAGTAGTGGATTTTCTGAAAGAGAAAGTTCCTGGAATAACTATTGCTACAGATATTATCTG  1258

Query 1092  TGGTTTTCCTGGAGAAACAGATCAGGATTTTCAAGAAACAGTGAAACTTGTTGAAGAGTACAAATTCCCAAGCC  1165
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  TGGTTTTCCTGGAGAAACAGATCAGGATTTTCAAGAAACAGTGAAACTTGTTGAAGAGTACAAATTCCCAAGCC  1332

Query 1166  TGTTTATTAACCAATTTTACCCAAGACCAGGAACTCCTGCTGCAAAAATGGAACAAGTTCCAGCACAAGTGA--  1237
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct 1333  TGTTTATTAACCAATTTTACCCAAGACCAGGAACTCCTGCTGCAAAAATGGAACAAGTTCCAGCACAAGTGATT  1406

Query 1238  --------------------------------------------------------------------------  1237
                                                                                      
Sbjct 1407  GGTGAAAGACAACAAGTGTTAGTAACAGAAGAATCTTTTGATTCCAAGTTTTATGTTGCACACAATCAATTCTA  1480

Query 1238  -----------------AAAA-----------------------------------------------------  1241
                             ||||                                                     
Sbjct 1481  TGAGCAGATAAGAGGTGAAAATGTTTGCTATGGATCATGGCTGGAATTAGAGCTTGAGAAGATGCTGAAGGCCA  1554

Query 1242  --------------------------GCAAAGGA----------------CAAAAG------------------  1255
                                      |||.||||                ||.|||                  
Sbjct 1555  AGGTGGACAAGTCGGATGAGGGATGGGCAGAGGAAGCAGGCTGCCTGTGTCAGAAGGCAGGAAAGCAGGAGCTG  1628

Query 1256  -----------------------------------ATCT-----------------------------------  1259
                                               ||||                                   
Sbjct 1629  AAGAGGCCCCCAGCATTGACATTCCCCAGGGAATCATCTCAGACTGGGCAGTGCGTCCCCAGGAAACAGGGGAG  1702

Query 1260  --------------------------------------------------------------------------  1259
                                                                                      
Sbjct 1703  CTTTTCAAAGCCCAGACTAAACGTGCTCTGTTCAGTACCGGTGGAGACTGCAGTTGAGGAAGGGCTCCCAGCAC  1776

Query 1260  --------------------------------------------------------------------------  1259
                                                                                      
Sbjct 1777  TCCATGTCTGGCCTGCATCGCTTCCCCATTTCCCCATCTCATTAATATACCCCAGAGGGCCATTTTCCTATTCA  1850

Query 1260  ------------------------------------------------------TTCTC---------------  1264
                                                                  |||||               
Sbjct 1851  GGCCAACCTTCTGCTCAGCCCTGGGGAGGAGCTTGATTGCATTTTGGTTGCCTCTTCTCTCTCCTTTCTCTTGC  1924

Query 1265  -----GGGTGT-------------------------TTCATTCTTACAG-------------------------  1283
                 ||||.|                         |||||| |||.||                         
Sbjct 1925  CATCTGGGTTTTGCCTCAGCAGGGAACTTTTTTCCCTTCATT-TTAAAGGCAGTGGCATGCCTCGTTAGCTGCT  1997

Query 1284  ---TCCA---------------------------TAT-------------------------------------  1290
               ||||                           |||                                     
Sbjct 1998  TCCTCCAATTTAAAGCAGTCGGGCTTTTTCCAATTATTAAAACTGGAGGAGGGGAAAACACTGAGCCCTTCATT  2071

Query 1291  --GATCA-----------CAAG-------ATT------------------------------------------  1302
              |||||           ||||       |||                                          
Sbjct 2072  CAGATCAAGGCAGCAGATCAAGGAGGGTTATTTTTCCCCAGAATAGTACCAAATCTCCCAGGGTTAGTTTGGTC  2145

Query 1303  --------------------------------------------------------------------------  1302
                                                                                      
Sbjct 2146  TAGAGATTTTCTTATTTTATAAAAACTGATTTAAATGGGCTTTTTATATCCTAACACTAAAGCTCTTTTAGTTC  2219

Query 1303  -------------------------------GGTGA--------------------------------------  1307
                                           |||||                                      
Sbjct 2220  TTTTTGCCTGCCCTAAGTAATTCACCACCCAGGTGACCTTTTTCTTCTACTTTGATGAAGCAGTGTACTCAGTG  2293

Query 1308  -----------------------AAGA--CAA------------------------------------------  1314
                                   ||||  |||                                          
Sbjct 2294  GTCATAAAAATCAAACTCAGACCAAGATTCAATTTTGCCTTTCAGAGAGATTGGCTGTGGAACTCCTGGCTCTC  2367

Query 1315  --------------------------------------------------------------------------  1314
                                                                                      
Sbjct 2368  ATCTGACTTTTCTGTCTCTATAACTAAGCATATCAAAGATTTTCTAGGAATTATTTTTCTAAATAAGATGAGTT  2441

Query 1315  ----------------------------CAAGTGTTAGT-----------------------------------  1325
                                        |||||.|||.|                                   
Sbjct 2442  CCAGAGATGAAGATTGTATCTAGATATCCAAGTATTACTGGATTAGAACTGGTCTATTTATTTTGGATTCTAAC  2515

Query 1326  --------------------------------AACAGAA-----------------------------------  1332
                                            ||.||||                                   
Sbjct 2516  TTGAAAAGACTGGCAAGTCGCTGCAGTGCTAAAATAGAAGTGTAAGGGAGACATCACACACACAAGCTACCTGT  2589

Query 1333  -----------------------------------------------------GAATCT---------------  1338
                                                                 ||||||               
Sbjct 2590  GGGTCCCAAAGGAAGGGAAACGTTTGCTTGAAGTAAACAAGTACTTTTATCAGGAATCTCTAGTGGAAAGAGAC  2663

Query 1339  ----------TTT---------------------------------------------------GATTCCAAG-  1350
                      |||                                                   ||||||.|| 
Sbjct 2664  CACCTGACAGTTTCCTGTGAACAAGCCAAAGTACCCTTCAGAGGACTGGTTCTAGATGGAGGTAGATTCCCAGG  2737

Query 1351  -----------------TTTT-----------------------------------------------------  1354
                             ||||                                                     
Sbjct 2738  ACTGACAAACACATGCCTTTTCTAACAGAGCAAGGGAAATGAACGGCAGCTGTTAGTTTCAGGAGTCATTTAGC  2811

Query 1355  -----------------------------------------ATGT----------------------TGCACAC  1365
                                                     ||||                      .||||||
Sbjct 2812  TCCAAACAGCAGTGTACAGTGTTATTGGAAGGTTCTTTTAAATGTACCTCCTTCTCCCTCAAAACACAGCACAC  2885

Query 1366  A-------------------------------------------------------------------------  1366
            |                                                                         
Sbjct 2886  ACATGCACGGACACAAACACGCAGGCCTGTTTGAAGTGTCTTTTCAAACCATTACTCTGACAGCTCACTTGGAA  2959

Query 1367  --------------------------------------------------------------------------  1366
                                                                                      
Sbjct 2960  AGTATTAAAAGTATAAGGCTTTCATCAGTATTGTCTCGGTTTTCCTCATTGCATGGAATAGCCAAAAGCAAGAT  3033

Query 1367  ATCAA----------------------------------------------------TTCTA------------  1376
            |||||                                                    |||.|            
Sbjct 3034  ATCAAAGGCCTGTCCAGAAGTGGCTGGCTGATTGCTGGGGGATTTCCCAGGTCTGCCTTCCACGTGCCTCAGGA  3107

Query 1377  --------------------------------------------------------------------------  1376
                                                                                      
Sbjct 3108  CATCAGGCACATCCTGCACTGGAAAAGCACTGCCCAGGGGCCCAGGAGCCCCTCCCAGGAGTGCCTTTCCTTCC  3181

Query 1377  -------------------TGAGC--------------------------------------------------  1381
                               |||||                                                  
Sbjct 3182  TGCAGGCTCTGCAGACCCTTGAGCAGCTAGAAGATAGAGTCCACTTTGTAGGGGATCCCAGAACAGAAAAATGA  3255

Query 1382  --------------------------------AGGTTTTAGTGCCAAAGAACCCTGCGTTCATGGGGAAGATGG  1423
                                            ||||||||||||||||||||||||||||||||||||||||||
Sbjct 3256  CATTGAGGGACAATGAGGAAACCTGGATAATTAGGTTTTAGTGCCAAAGAACCCTGCGTTCATGGGGAAGATGG  3329

Query 1424  TTGAAGTGGACATCTATGAATCAGGCAAACATTTTATGAAAGGGCAGCCAGTATCTGATGCCAAAGTGTACACG  1497
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3330  TTGAAGTGGACATCTATGAATCAGGCAAACATTTTATGAAAGGGCAGCCAGTATCTGATGCCAAAGTGTACACG  3403

Query 1498  CCCTCCATCAGCAAACCGCTAGCAAAGGGAGAAGTCTCGGGTTTGACAAAGGACTTCAGAAATGGGCTTGGGAA  1571
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3404  CCCTCCATCAGCAAACCGCTAGCAAAGGGAGAAGTCTCGGGTTTGACAAAGGACTTCAGAAATGGGCTTGGGAA  3477

Query 1572  CCAGCTGAGTTCAGGATCCCACACCTCTGCTGCATCTCAGTGTGACTCAGCGAGTTCCAGAATGGTGCTGCCCA  1645
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3478  CCAGCTGAGTTCAGGATCCCACACCTCTGCTGCATCTCAGTGTGACTCAGCGAGTTCCAGAATGGTGCTGCCCA  3551

Query 1646  TGCCAAGGCTACATCAAGACTGTGCGCTGAGGATGTCCGTGGGCTTGGCTCTGCTGGGTCTTCTTTTTGCTTTT  1719
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3552  TGCCAAGGCTACATCAAGACTGTGCGCTGAGGATGTCCGTGGGCTTGGCTCTGCTGGGTCTTCTTTTTGCTTTT  3625

Query 1720  TTTGTCAAGGTCTATAAT--------------------------------------------------------  1737
            ||||||||||||||||||                                                        
Sbjct 3626  TTTGTCAAGGTCTATAATTAGAATACAACTAATGGAAACATCTATAAAGAAGAATACATTTCTAATTAAAATCT  3699

Query 1738  -----------------------  1737
                                   
Sbjct 3700  TCAATGAACAGGAAAGCGACATC  3722