Nucleotide Global Alignment
Description
- Query:
- TRCN0000476234
- Subject:
- XR_937576.2
- Aligned Length:
- 4748
- Identities:
- 1295
- Gaps:
- 3363
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACAGTTAAATTTGTAATTTGGGTTGTGTGAAAACTTCTTTGGGCCTCATAAACAACCACAGAACCACAAGTTGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GTAGCCTGGCAGTGTCAGAAGTCTGAACCCAGCATAGTGGTCAGCAGGCAGGACGAATCACACTGAATGCAAAC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CACAGGGTTTCGCAGCGTGGTAAAAGAAATCATTGAGTCCCCCGCCTTCAGAAGAGGGTGCATTTTCAGGAGGA 222
Query 1 ----ATGGCTTCAGACAGCATATTTGAGTCATTTCCTTCGTACCCACAGTGCTTCATGAGAGAATGCATACTTG 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 AGCGATGGCTTCAGACAGCATATTTGAGTCATTTCCTTCGTACCCACAGTGCTTCATGAGAGAATGCATACTTG 296
Query 71 GAATGAATCCTTCTAGAGACGTCCACGATGCCAGCACGAGCCGCCGCTTCACGCCGCCTTCCACCGCGCTGAGC 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GAATGAATCCTTCTAGAGACGTCCACGATGCCAGCACGAGCCGCCGCTTCACGCCGCCTTCCACCGCGCTGAGC 370
Query 145 CCAGGCAAGATGAGCGAGGCGTTGCCGCTGGGCGCCCCGGACGCCGGCGCTGCCCTGGCCGGCAAGCTGAGGAG 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CCAGGCAAGATGAGCGAGGCGTTGCCGCTGGGCGCCCCGGACGCCGGCGCTGCCCTGGCCGGCAAGCTGAGGAG 444
Query 219 CGGCGACCGCAGCATGGTGGAGGTGCTGGCCGACCACCCGGGCGAGCTGGTGCGCACCGACAGCCCCAACTTCC 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CGGCGACCGCAGCATGGTGGAGGTGCTGGCCGACCACCCGGGCGAGCTGGTGCGCACCGACAGCCCCAACTTCC 518
Query 293 TCTGCTCCGTGCTGCCTACGCACTGGCGCTGCAACAAGACCCTGCCCATCGCTTTCAAGGTGGTGGCCCTAGGG 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TCTGCTCCGTGCTGCCTACGCACTGGCGCTGCAACAAGACCCTGCCCATCGCTTTCAAGGTGGTGGCCCTAGGG 592
Query 367 GATGTTCCAGATGGCACTCTGGTCACTGTGATGGCTGGCAATGATGAAAACTACTCGGCTGAGCTGAGAAATGC 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GATGTTCCAGATGGCACTCTGGTCACTGTGATGGCTGGCAATGATGAAAACTACTCGGCTGAGCTGAGAAATGC 666
Query 441 TACCGCAGCCATGAAGAACCAGGTTGCAAGATTTAATGACCTCAGGTTTGTCGGTCGAAGTGGAAGAGGGAAAA 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TACCGCAGCCATGAAGAACCAGGTTGCAAGATTTAATGACCTCAGGTTTGTCGGTCGAAGTGGAAGAGGGAAAA 740
Query 515 GCTTCACTCTGACCATCACTGTCTTCACAAACCCACCGCAAGTCGCCACCTACCACAGAGCCATCAAAATCACA 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GCTTCACTCTGACCATCACTGTCTTCACAAACCCACCGCAAGTCGCCACCTACCACAGAGCCATCAAAATCACA 814
Query 589 GTGGATGGGCCCCGAGAACCTCGAAGACATCGGCAGAAACTAGATGATCAGACCAAGCCCGGGAGCTTGTCCTT 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GTGGATGGGCCCCGAGAACCTCGAAGACATCGGCAGAAACTAGATGATCAGACCAAGCCCGGGAGCTTGTCCTT 888
Query 663 TTCCGAGCGGCTCAGTGAACTGGAGCAGCTGCGGCGCACAGCCATGAGGGTCAGCCCACACCACCCAGCCCCCA 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TTCCGAGCGGCTCAGTGAACTGGAGCAGCTGCGGCGCACAGCCATGAGGGTCAGCCCACACCACCCAGCCCCCA 962
Query 737 CGCCCAACCCTCGTGCCTCCCTGAACCACTCCACTGCCTTTAACCCTCAGCCTCAGAGTCAGATGCAGGATACA 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CGCCCAACCCTCGTGCCTCCCTGAACCACTCCACTGCCTTTAACCCTCAGCCTCAGAGTCAGATGCAGGATACA 1036
Query 811 AGGCAGATCCAACCATCCCCACCGTGGTCCTACGATCAGTCCTACCAATACCTGGGATCCATTGCCTCTCCTTC 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 AGGCAGATCCAACCATCCCCACCGTGGTCCTACGATCAGTCCTACCAATACCTGGGATCCATTGCCTCTCCTTC 1110
Query 885 TGTGCACCCAGCAACGCCCATTTCACCTGGACGTGCCAGCGGCATGACAACCCTCTCTGCAGAACTTTCCAGTC 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 TGTGCACCCAGCAACGCCCATTTCACCTGGACGTGCCAGCGGCATGACAACCCTCTCTGCAGAACTTTCCAGTC 1184
Query 959 GACTCTCAACGGCACCCGAC----CTGA------CAGCGTTCAGCGACCCGCGCCAGTTCCCCGCGCTGCCCTC 1022
||||||||| || .||| |||..|||| ||||.|.||...|||||..|.
Sbjct 1185 GACTCTCAA---------ACAGTTGTGATTACTTCAGGTTTCA----------CCAGATGCCTTAGCTGCTGTT 1239
Query 1023 CA-----TCTCCGACCCCCGCATGCACTATCCAGGCGCCTTCAC----------CTACTCCCCGAC-------G 1074
|| ||.|.|| |||| || ||.|.|.| |||||| |||.| ||| |
Sbjct 1240 CAGAGCTTCACAGA-------ATGC-CT-TCTAAGAG-CTTCACAACGGCAGTACTATT----GACATTTGGGG 1299
Query 1075 CC---------------------GGTC--ACCTCGGGCATCGG--------CATCGGCATGTCGGCCATGGGCT 1117
|| |||| .||| |.||||||| .|.|.|||| ||.|||.||
Sbjct 1300 CCAAATAATTCTTTGTTGGGGGGGGTCTGTCCT-GAGCATCGGAGAATATTTAGCAGCAT-----CCTTGGCCT 1367
Query 1118 C----GGCCA-------CGCGCT-ACCACACCTA------------------CCTGCC---GCC-----GCCCT 1153
| .|||| |.|.|| |||.||..|| ||.|.| ||| .|||.
Sbjct 1368 CTAGATGCCAATAGCATCCCCCTCACCCCAGTTAGGACAATAAAAAATGTTTCCAGACATTGCCAAATTTCCCA 1441
Query 1154 A-------------CCCC------------------------------GGCTCGT------------------- 1165
| |||| ||.|.||
Sbjct 1442 AGGGGCAAAACTGTCCCCAGGTGAGAACCACTGCCTTCCAGTGTTCTTGGGTGGTACAGTAAAATAGGAAAACC 1515
Query 1166 --CGCAAGCGCAGGG---------------AGGC-----------------------------CCGTTCCAAGC 1193
|..|||.||..|| .||| |.|.||||||.
Sbjct 1516 AACTTAAGTGCTTGGTTTTCACATTACTTTTGGCCATTAATGCCAATATTTTCATGGTACATTCTGCTCCAAGG 1589
Query 1194 C-----------------------------------AGCTCG------------------CCCTC-----CTA- 1208
| ||||.| ||||| |.|
Sbjct 1590 CATTGAGAGTAGCACAGGTATCTTGGCATCTTGTTTAGCTTGTGGTTTCTAGAAGCTTATCCCTCAAGAACAAA 1663
Query 1209 -CCACCTG--------TACT----------ACGG--CGCCTCGG----CCGGCTCC------------------ 1239
.|||.|| |||| |.|| |.||||.| ||||||.|
Sbjct 1664 GGCACTTGTCAGCTTTTACTGATTGTTCTCAGGGCACCCCTCTGCACACCGGCTACGGTCTTCACCTGAAATAA 1737
Query 1240 TACCAGTTCTCC----------------ATGG--------------------------------------TGGG 1259
|.||.||||||| |||| |||.
Sbjct 1738 TGCCTGTTCTCCTTCAAATGTTCCTGCTATGGGTCTATCCTTTGGAATTTATTACATAAGTCTTTTGACTTGGT 1811
Query 1260 CGGCGAGCGCTCGCCGCCGC-------GCATCCT----GCC-----GCCCT--GCACCAACGCCTCCACCGG-- 1313
| .||.|| | ||| ||| |.| .|||| |..|||||.||||||.|.|
Sbjct 1812 C--------ATCACC----CAAGATCAGCA-CCTTATAGTCCAAGAACCCTAGGGGCCAACTCCTCCAGCTGAC 1872
Query 1314 -------------------------------------------------------CTCC--------------- 1317
||||
Sbjct 1873 TGGTGTTCAGATGGTAGGGTGACTTTTTAAATAAAAGGAATGAGTAACATGTGCACTCCAAAGTCCCATATCAC 1946
Query 1318 ---------------------GCGCTGC--TCAACC-------------------------------------- 1330
|..||.| |||.||
Sbjct 1947 AGTTACATTTGTGAATATCCTGGACTTCAATCACCCAAGGAGTAAGAGAGAACATTTTATGGCATGGGAGTGTG 2020
Query 1331 -------------CCA-GCCTC----CCGAACC--AGAGCGA-------CGTGGTGGAGGCCGAGGGCAG---- 1373
||| ||||| |.||||| |||..|| |.|..|||||| ||||.|||
Sbjct 2021 AAGTAGATAAAAACCATGCCTCATTTCAGAACCCAAGAATGATTCTTTTCTTTTTGGAGG--GAGGACAGAATT 2092
Query 1374 CCACA---------------GCA----------------ACTCCCCCACCAACATGG-----CGCCCTCCG--- 1408
|||.| ||| ||| .|.|..|||..||| |.|||||.|
Sbjct 2093 CCAGATGAGCTTTCACAGTGGCATAGAACAGTATGGGAGACT-GCTCTTCAATTTGGCAGAACTCCCTCTGAGA 2165
Query 1409 ---CGCGCCTGGAG--GAGGCC------GTG------------TGGAGGC-------------CCTAC------ 1440
|..|||||||| .||||| ||| ||||||| ..|||
Sbjct 2166 AATCAAGCCTGGAGCACAGGCCTGAAAAGTGTTGTCATAAACCTGGAGGCAGGAGGGGGGTGGAATACATAAAA 2239
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 2240 GGAAAGTGGCTGCCTGGCCGACAGCTTTGAGAACCTGACACTGCTCTGTGGCTGCTTTGCCTTTTAATCCAGCC 2313
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 2314 CGACAGCTTTGTGCTCTGCCCCTCTTCCCGGCCCCAGCCCCACCTGGGCTTCCTTCTGCGCTGGGGACTTGGAC 2387
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 2388 TCTGTCTGTCTCTCTCTCTCTATCCTTTGCAGACAGACTCCACACCTTGTCTGAAAAGAGTTGTCATCTAGAGG 2461
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 2462 TTTACTTTTTTTTTTCTTTTTCAAAAAAAATTAATGTTTAGCTGCCAACCTGGGCGACAGACAGCATGCATTAA 2535
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 2536 TCTGAGTCATGCAAAAGCTCCTTTTAAGGCAGCCATTACCTGCTCAGGTTGTTTAATCCTCTGGGGGCAGTAGG 2609
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 2610 AGGGGCCCTGTAGCGAGGCTGCTTTCATCCATGTCAAGCTGGAGAGCGAAGACTTGAGCTGTCATGGCAAATAT 2683
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 2684 TTAGCCCCATCAATGGGAAAACACTTCCAACCAAAATACCTGGACCTCCTAAGCCCCAGATTTCCTACTCTTAA 2757
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 2758 AAACTCTCTGTGAATATCAGGGGATCCCAACTCCCCCCACACTTCTGCTGAATCAGGGGACACCAGGCCAGCCA 2831
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 2832 AAAGGACAGAAGAGCTACAGCTGGATGGGTGAACTGCGCAGACTGATGGGTTTGAATAAGGGATCTGAGACAAG 2905
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 2906 ACACAAAGATGAAAACCAACATTTGAATATAGCATTTGAATCTGAGCATATCTAGAAGGCCTAAGATATTGTAT 2979
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 2980 TATCAAAATGTGTGTAAAAAAGATAGTTTGACCAAATGGATGGTCTTTTGTAGTATGACGTTGCTCATGTGTAC 3053
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 3054 ATAGAAGAAGGATCACAGGCAGCATTGCAGCTCTTTCTTTTGGATGTTCTCCTCACAAGTGAAAGAACTATTTT 3127
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 3128 CCCCCAACAGCTGAGACCATAACATCATTCCAGTACTTATGTCCATGACAAATCACGGACTCACTCTGGATTCC 3201
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 3202 AGTAACTTGGTACCATCACCACATTACCATGTAGTAGTTGGAACCTACTGGCAGAGCATGTCCAGACATTGCTG 3275
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 3276 TAAAACAGGGTGACCTTTCGTTCATTTTCCAGTGGATTCACCTTTTTGTCTCAGGGCAAATGAAGCAAGAGGAA 3349
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 3350 TAATGGGCAGAGTCATTTATTTGTGTCCAGAGTATTGCATCAGATGACAACAAACTGACTGTATTTGCCTAATG 3423
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 3424 CTTTTCCTCCTGTCCCAGCTTCTCCGTAGACTCTATAAATCTAAATGGAAAAATGGAGTAAAGCTTCCTGTTAA 3497
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 3498 CTCTCAAACATGTCACAGCTCTCCATGTCAGCAAAAACAAGTGACACAGGGCTTGCTCACAGATGGCCCCAAAG 3571
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 3572 AGCGGGCAGGGATGAACCCTGTGGAATGAGGTGTGGCCTGGCTCGAGAATGACTAGAGTGTGGCCAAGGAAGGG 3645
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 3646 CAGCCTCAGAACCACTGTCCGTTTACAACGTTTTCCCTGCCCACATGTCTGCCTGGCTTTGAAAAGATTAACAG 3719
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 3720 GAGTGTTTGTTTGAAAGTCAGACTCCTGGTTTCCTCATTAGTGAAGGGATCTGCTACAGACTTGGGCTGTTTCT 3793
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 3794 ATAAACTTTAATTACCTCTGATGAGGAGTGTATCCCCTCATCACATTCACCCCAAAGGTACAGAGGAGTTCATT 3867
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 3868 TTTAAAAATGTGTTAGAGCAATAAAAGGCCATTAGAGGGAGGGAGGATGGGGTGTGGAAGAGACGAGAGAGCGA 3941
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 3942 GCGAGAGAGAGAGAAAACACACTAGCTCTCCCTGCTGGAATAATAGGCTTGAAATATGAGGAAGTTGATCAACT 4015
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 4016 GCCGCTGCCTTCCAAAAACAGATTAATCCACCTTGGTAGCTTTCCTTTCAGAGCAAGCTTTTGGCTCTGTCGAC 4089
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 4090 TTTCTCTATCAGCCTGAACTCAAAAGGACACAGGCCACATGCCATCTGAGCTTAAGAGTTATTTTGTGTGTTGA 4163
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 4164 TCTGAGAACTTCACATTTTAAAACAATGAATTCATGTTTCTACTGTTTGTTGCTGTCTGTGGATTTGCTGATAT 4237
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 4238 AAAGAGGAGAGTCCTAGCCTGGTCATTTAATGAATAATTCTAAGGAACCTGAACTTCTCCAGGGTGCCCTTCTA 4311
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 4312 CATCTGCAGTGGTGGTTCTCAGCTGGGGTGACTTTGCTTCCGTCACCCCACCCGCAGGATATCTGGCAATGTCT 4385
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 4386 GGAGACATTCTGAGTTGTCACAAGAGGGGCGGGCGATGCTACTAACACCTAATGGGTAAAGCAGAGATGCTGCC 4459
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 4460 ACACATCCTACGATGAACGAGACAGCCCCCTCCACCCCAGCAAATCATGATCTGGCCCAAAATGTCAACAGTGT 4533
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 4534 CAACAGTTGAGAAACTCTGATCTACAGATATAGGGAACCCTGCCTAATACACAAATCCTCCGTAGTTCCCAAGG 4607
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 4608 GCGGCCTGTAGCGGCACCCGACCTGACAGCGTTCAGCGACCCGCGCCAGTTCCCCGCGCTGCCCTCCATCTCCG 4681
Query 1441 ------------ 1440
Sbjct 4682 ACCCCCGCATGC 4693
