Nucleotide Global Alignment
Description
- Query:
- TRCN0000476385
- Subject:
- XM_006509242.3
- Aligned Length:
- 2970
- Identities:
- 1425
- Gaps:
- 1314
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGCACCGCGATGCCACCGACAGCAGCGGCGCCCGCCGCGGCCCCACGTCCGCCGCAGACGCCTGCCGCGCTGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCGGGGCTCCGCGGACCGGCCGCGGACGGCGGACGGCCCGGGCTGGGGCTGGCGGGGGCCCGCGGCCGTGGCCG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCCTGGCAGTGCTGGCGCTGTGCTGCCTGGTCCCAGGCTGGGGACCGGCGGCGGGCACGGGGCCGGGCGCCGTG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CTGCTGCGCCTCAGCCTGTACCTGAGCTGCGCCGCGGCCGCCTTGCTGCTGGGGACACTGGTCTCGCTCGTCTG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CTGGAGCCCGCGCGCCCAGCCGCCGGACTTCGTCTCTTCCTGGAGCCGGCTGGCGGCGACCGTCCGCTGTCCGC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TGCGGAGCCCTGTATATGGAAATCCACAGGAGACAGCTCAGGGCAGAAGAGTGGTCATTTCTCACAACATGGAT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CGTGTTCTGAGAGATGTGTTCGACTACAGTTACAGAGACTATATTCTCTCCTGGTACGGGAACCTCAGCAGAGA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TGACGGACAGCTCTACCATCTGCTCTTAGATGACTTCTGGGAAATTGTCAAGCAGATTCGCCAGAGGCTGAGTC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 ACGTGGATGTGGTTAAAGTTGTCTGTAATGATATTGTAAAGGCTTTGCTCACTCACTTCTGTGACCTGAAGGCT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GCTACTGCCAGACATGAAGAACAGCCAAGGCCTTTTGTGTTGCATGCATGCTTGAAGGATTCACATGATGAAGT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AAGATTCCTTCAAACATGTTCTCAGGTTCTGGTGTTATGCCTTCTCCCTTCTAAGGATATCCAGTCTCTCAGCT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TACGTACAATGCTCGCAGAAATTCTTACGACAAAAGTCTTGAAGCCAGTAGTGGAATTGCTGAGTAACCCTGAC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TACATTAACCAAATGCTGCTCAGGCAGTTGGAGTACAGAGAGCAGATGAGTGAGCATCACAAGCGAGCCTACAC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GTACGCGCCTTCCTACGAGGACTTTATCAAGCTCATCAACAGCAACTCTGATGTGGACTTCCTGAAGCAGCTCA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GGTATCAAATTGTAGTGGAGATAATCCAAGCAACTACAATCAGCAGCTTTCCCCAGCTGAAGAGACACAAGGGT 1110
Query 1 ---------------ATGAAAGCTGATCTCCTGAGGGCCAGGAACATGAAGAGGTACATCAACCAACTGACTGT 59
||||||.||||||||.|||||||||||||||||||.||||||||.|||||.||||||||
Sbjct 1111 AAGGAATCAGCTGCCATGAAAACTGATCTCTTGAGGGCCAGGAACATGAAAAGGTACATTAACCAGCTGACTGT 1184
Query 60 GGCAAAGAAGCAGTGTGAGAAGAGAATCCGAATCCTGGGAGGCCCTGCCTATGACCAGCAAGAGGATGGGGCCC 133
||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||.|||.
Sbjct 1185 GGCAAAGAAGCAGTGTGAGAAGAGAATCCGAATCCTGGGAGGTCCTGCCTATGACCAGCAAGAGGATGGAGCCT 1258
Query 134 TGGATGAGGGGGAAGGGCCTCAAAGCCAGAAGATTCTTCAGTTTGAAGATATCTTGGCCAATACGTTCTACCGA 207
.||||||.||||||||||||||.|||||.|||||||||||||||||||||||..||.|||||.|.|||||||||
Sbjct 1259 CGGATGAAGGGGAAGGGCCTCAGAGCCAAAAGATTCTTCAGTTTGAAGATATTATGACCAATCCTTTCTACCGA 1332
Query 208 GAGCACTTTGGAATGTACATGGAAAGGATGGACAAAAGAGCTCTGATTAGTTTTTGGGAATCTGTGGAACATTT 281
||||.||||||||..|||||||||.||||.|||||..|.|||||..||.|.||||||||.||||..|||||..|
Sbjct 1333 GAGCGCTTTGGAACATACATGGAACGGATAGACAAGCGGGCTCTAGTTGGCTTTTGGGAGTCTGCCGAACACCT 1406
Query 282 AAAGAATGCTAACAAGAATGAAATTCCACAATTAGTTGGTGAAATTTATCAGAATTTCTTTGTGGAGAGCAAAG 355
.||||||||||||||||.|||||||||||||||||||.|||||||.||||||||||||||.|||||.|||||.|
Sbjct 1407 GAAGAATGCTAACAAGAGTGAAATTCCACAATTAGTTAGTGAAATGTATCAGAATTTCTTCGTGGAAAGCAAGG 1480
Query 356 AAATATCTGTGGAAAAATCACTTTACAAAGAAATTCAGCAGTGTCTTGTAGGAAATAAAGGTATTGAAGTATTC 429
||||.||.||||||||.|||||||||||||||||.||||||||||||||.|||||.|.|||.||.||.||.|||
Sbjct 1481 AAATCTCCGTGGAAAAGTCACTTTACAAAGAAATCCAGCAGTGTCTTGTGGGAAACAGAGGCATCGAGGTGTTC 1554
Query 430 TACAAAATCCAGGAAGATGTTTATGAGACCCTAAAGGACAGGTATTACCCTTCATTTATTGTCAGTGACCTGTA 503
..|||||||||.|..|||||.|..|||...||.|.|||..||||||||||.||.||..|.|||||.||||||||
Sbjct 1555 AGCAAAATCCAAGCCGATGTGTCCGAGGTGCTGAGGGAGCGGTATTACCCCTCCTTCCTCGTCAGCGACCTGTA 1628
Query 504 TGAGAA----AT---TGTTGATAAAAGAGGAAGAAAAACATGCCT----CACAGATGATTTCCAACAAGGATGA 566
|||||| || ||..|| |.|||||||.|| |||| |.|||.||...||..|.||||||||
Sbjct 1629 TGAGAAGCTCATGCGTGAGGA-AGAAGAGGAGGA-------GCCTGACGCTCAGCTGGCCTCTGAGAAGGATGA 1694
Query 567 GATGGGCCCAAGAGATGAGGCTGGTGAGGAAGCCGTGGATGATGGTACCAATCAGATCAATGAACAAGCCAGTT 640
|.||||..||.|||.|||||||||||||||.||.|| .||.||.||||.|..|.|||.|||.|.||||||.|
Sbjct 1695 GCTGGGTTCAGGAGGTGAGGCTGGTGAGGAGGCTGT---AGAAGGCACCAGTGGGGTCAGTGATCCAGCCAGCT 1765
Query 641 TTGCTGTAAACAAACTGCGAGAACTAAATGAGAAACTTGAATATAAAAGGCAAGCTCTAAATTCTATTCAAAAT 714
|||||||||.||||||.|||||.||||||||||||||||||||.||||||||||||||||.|||||||||.|||
Sbjct 1766 TTGCTGTAATCAAACTCCGAGAGCTAAATGAGAAACTTGAATACAAAAGGCAAGCTCTAAGTTCTATTCAGAAT 1839
Query 715 GCACCAAAACCTGACAAGAAGATTGTTTCCAAGTTGAAGGATGAAATAATCCTAATAGAGAAAGAACGCACAGA 788
||||||||||||||.|||||||||.|||||||||||||||||||||||.|.||.||||||||||||.||||.|.
Sbjct 1840 GCACCAAAACCTGATAAGAAGATTATTTCCAAGTTGAAGGATGAAATACTTCTGATAGAGAAAGAATGCACGGC 1913
Query 789 CCTTCAGCTGCACATAGCAAGAACGGATTGGTGGTGTGAAAACCTTGGCATGTGGAAAGCCTCCATCACCAGTG 862
.||||||||||||||.||.|||||.||||||||||||||.|||||.|||.||||||.|||.|||||||||||.|
Sbjct 1914 TCTTCAGCTGCACATGGCGAGAACAGATTGGTGGTGTGAGAACCTGGGCCTGTGGAGAGCATCCATCACCAGCG 1987
Query 863 GAGAGGTTACAGAAGAGAATGGTGAGCAATTGCCATGTTACTTTGTCATGGTAAGCCTACAAGAAGTTGGAGGA 936
.||||||.||||||||||||||.||||||.||||.|||||||||||||.|||||..||||||||||||||||||
Sbjct 1988 CAGAGGTGACAGAAGAGAATGGCGAGCAAATGCCTTGTTACTTTGTCAGGGTAAATCTACAAGAAGTTGGAGGA 2061
Query 937 GTTGAAACTAAGAACTGGACGGTCCCCAGAAGGCTCAGCGAGTTTCAGAATTTACACCGGAAACTCAGTGAGTG 1010
||||||||||||||||||||.|||||.|||||||||||.|||||||||||||||||.||||||||.||||||||
Sbjct 2062 GTTGAAACTAAGAACTGGACCGTCCCAAGAAGGCTCAGTGAGTTTCAGAATTTACATCGGAAACTTAGTGAGTG 2135
Query 1011 CGTCCCTTCTTTAAAAAAAGTCCAGTTGCCTTCTCTTAGCAAGCTGCCTTTCAAATCTATAGATCAAAAGTTTA 1084
.|||||||||||||||||||||||||||||||||||.||.||||||||||||||||||||||||||.|||||..
Sbjct 2136 TGTCCCTTCTTTAAAAAAAGTCCAGTTGCCTTCTCTCAGTAAGCTGCCTTTCAAATCTATAGATCACAAGTTCC 2209
Query 1085 TGGAAAAGTCGAAG-AATCAATTAAAT-----------------------------AAG--------------- 1113
|||.|||||| ||| |||||.|||||| |||
Sbjct 2210 TGGGAAAGTC-AAGAAATCAGTTAAATGCATTTCTACAGAACCTGCTTTCAGATGAAAGACTGTTCCAGAGCGA 2282
Query 1114 -------------TTTTT--------------AC---------------------------------------- 1120
||||| ||
Sbjct 2283 AGCACTTTATGCCTTTTTGAGCCCTTCTCCTGACTACCTCAAGGTCATTGATGTACAGGGGAAAAAGACCTCCT 2356
Query 1121 ------------------------------------------------------AGGAGGAGACAGAGGAGGAC 1140
|||||||||.|||.||||||
Sbjct 2357 TCTCATTGTCTTCATTTCTGGAAAAACTTCCTCGTGACTTCTTCTCCCATCAGGAGGAGGAGATAGAAGAGGAC 2430
Query 1141 AGTGACCTGTCAGATTATGGTGATGATGTGGATGGGAGGAAAGACGCCTTGGCTGAACCATGTTTCATGTTGAT 1214
||.||||||||.|||||.||.|||||||||||.||||.|||.||..|||||||||||||.|||||||||.||||
Sbjct 2431 AGCGACCTGTCCGATTACGGGGATGATGTGGACGGGAAGAAGGATTCCTTGGCTGAACCGTGTTTCATGCTGAT 2504
Query 1215 TGGGGAGATTTTTGAACTTCGAGGAATGTTTAAATGGGTGAGAAGAACATTAATTGCCCTCGTTCAGGTCACTT 1288
.|||||||||||.|||||||||||||||||||||||||||.|||||||||||||.||.||.|||||||||||.|
Sbjct 2505 CGGGGAGATTTTCGAACTTCGAGGAATGTTTAAATGGGTGCGAAGAACATTAATCGCTCTTGTTCAGGTCACGT 2578
Query 1289 TTGGAAGAACCATCAACAAACAAATCCGGGACACAGTCAGCTGGATTTTCAGTGAGCAAATGTTGGTTTACTAC 1362
|||||||||||||||||||.||||||||.|||||.||.||||||||.|.|||.|||||.|||.||||.||||||
Sbjct 2579 TTGGAAGAACCATCAACAAGCAAATCCGCGACACGGTGAGCTGGATCTCCAGCGAGCAGATGCTGGTCTACTAC 2652
Query 1363 ATCAATATTTTCCGGGATGCTTTTTGGCCAAATGGGAAGTTGGCACCACCGACCACAATCAGAAGCAAAGAGCA 1436
||||.|..||||||||||||.|||||||||||.|||||..|||||||.||.||.|.||||.|||||...|..||
Sbjct 2653 ATCAGTGCTTTCCGGGATGCCTTTTGGCCAAACGGGAAACTGGCACCTCCAACAAGAATCCGAAGCGTGGCACA 2726
Query 1437 AAGTCAGGAAACAAAACAGAGAGCACAGCAAAAGCTGCTTGAAAACATTCCAGATATGCTTCAGAGCCTTGTTG 1510
.||||||||.||.||.||||||||||||||.||||||||.||.|||||||||||||..||||||||||||||||
Sbjct 2727 GAGTCAGGAGACGAAGCAGAGAGCACAGCAGAAGCTGCTCGAGAACATTCCAGATACACTTCAGAGCCTTGTTG 2800
Query 1511 GACAGCAAAATGCCCGCCACGGTATAATAAAAATATTCAATGCACTGCAAGAAACAAGAGCCAACAAGCATCTG 1584
|||||||||||||||||||.||||||||||||||||||||.||.||||||||.||||..||||||||.||.|||
Sbjct 2801 GACAGCAAAATGCCCGCCATGGTATAATAAAAATATTCAAGGCGCTGCAAGAGACAAAGGCCAACAAACACCTG 2874
Query 1585 TTATATGCGCTGATGGAACTGCTGCTAATTGAACTGTGTCCTGAGCTGAGAGTTCATTTAGATCAACTTAAAGC 1658
.|.||||.|||||||||.||||||||.|..||.||.||.|||||||||||.|.|||..|.|||||..|.|||||
Sbjct 2875 CTCTATGTGCTGATGGAGCTGCTGCTGACAGAGCTCTGCCCTGAGCTGAGGGCTCACCTGGATCAGTTCAAAGC 2948
Query 1659 TGGCCAAGTT 1668
|||||||||.
Sbjct 2949 TGGCCAAGTC 2958
