Nucleotide Global Alignment

Description

Query:
TRCN0000476797
Subject:
XR_001756516.1
Aligned Length:
3055
Identities:
1686
Gaps:
1243

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACACCCTGTGTGTCTCTCTGTCCTGCCAGCACTGAGGGCTCATCCCTCTGCAGAGCGCCGGGTCACCGGGAGGA  74

Query    1  ------ATGACGCCCGCCCTCACAGCCCTGCTCTGCCTTGGGCTGAGTCTGGGCCCCAGGACCCGCGTGCAGGC  68
                  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  GACGCCATGACGCCCGCCCTCACAGCCCTGCTCTGCCTTGGGCTGAGTCTGGGCCCCAGGACCCGCGTGCAGGC  148

Query   69  AGGGCCCTTCCCCAAACCCACCCTCTGGGCTGAGCCAGGCTCTGTGATCAGCTGGGGGAGCCCCGTGACCATCT  142
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  AGGGCCCTTCCCCAAACCCACCCTCTGGGCTGAGCCAGGCTCTGTGATCAGCTGGGGGAGCCCCGTGACCATCT  222

Query  143  GGTGTCAGGGGAGCCTGGAGGCCCAGGAGTACCGACTGGATAAAGAGGGAAGCCCAGAGCCCTTGGACAGAAAT  216
            |||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||.||||||||||
Sbjct  223  GGTGTCAGGGGAGCCTGGAGGCCCAGGAGTACCAACTGGATAAAGAGGGAAGCCCAGAGCCCTGGGACAGAAAT  296

Query  217  AACCCACTGGAACCCAAGAACAAGGCCAGATTCTCCATCCCATCCATGACAGAGCACCATGCGGGGAGATACCG  290
            |||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||.|||||||||||
Sbjct  297  AACCCACTGGAACCCAAGAACAAGGCCAGATTCTCCATCCCATCCATGACACAGCACCATGCAGGGAGATACCG  370

Query  291  CTGCCACTATTACAGCTCTGCAGGCTGGTCAGAGCCCAGCGACCCCCTGGAGCTGGTGATGACAGGATTCTACA  364
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  CTGCCACTATTACAGCTCTGCAGGCTGGTCAGAGCCCAGCGACCCCCTGGAGCTGGTGATGACAGGATTCTACA  444

Query  365  ACAAACCCACCCTCTCAGCCCTGCCCAGCCCTGTGGTGGCCTCAGGGGGGAATATGACCCTCCGATGTGGCTCA  438
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  ACAAACCCACCCTCTCAGCCCTGCCCAGCCCTGTGGTGGCCTCAGGGGGGAATATGACCCTCCGATGTGGCTCA  518

Query  439  CAGAAGGGATATCACCATTTTGTTCTGATGAAGGAAGGAGAACACCAGCTCCCCCGGACCCTGGACTCACAGCA  512
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  CAGAAGGGATATCACCATTTTGTTCTGATGAAGGAAGGAGAACACCAGCTCCCCCGGACCCTGGACTCACAGCA  592

Query  513  GCTCCACAGTGGGGGGTTCCAGGCCCTGTTCCCTGTGGGCCCCGTGAACCCCAGCCACAGGTGGAGGTTCACAT  586
            |||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||
Sbjct  593  GCTCCACAGTGGGGGGTTCCAGGCCCTGTTCCCTGTGGGCCCCGTGACCCCCAGCCACAGGTGGAGGTTCACAT  666

Query  587  GCTATTACTATTATATGAACACCCCCCAGGTGTGGTCCCACCCCAGTGACCCCCTGGAGATTCTGCCCTCAGGC  660
            |||||||||||||||..|||||||||..||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GCTATTACTATTATACAAACACCCCCTGGGTGTGGTCCCACCCCAGTGACCCCCTGGAGATTCTGCCCTCAGGC  740

Query  661  GTGTCTAGGAAGCCCTCCCTCCTGACCCTGCAGGGCCCTGTCCTGGCCCCTGGGCAGAGCCTGACCCTCCAGTG  734
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  GTGTCTAGGAAGCCCTCCCTCCTGACCCTGCAGGGCCCTGTCCTGGCCCCTGGGCAGAGCCTGACCCTCCAGTG  814

Query  735  TGGCTCTGATGTCGGCTACGACAGATTTGTTCTGTATAAGGAGGGGGAACGTGACTTCCTCCAGCGCCCTGGCC  808
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TGGCTCTGATGTCGGCTACGACAGATTTGTTCTGTATAAGGAGGGGGAACGTGACTTCCTCCAGCGCCCTGGCC  888

Query  809  AGCAGCCCCAGGCTGGGCTCTCCCAGGCCAACTTCACCCTGGGCCCTGTGAGCCGCTCCCACGGGGGCCAGTAC  882
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||
Sbjct  889  AGCAGCCCCAGGCTGGGCTCTCCCAGGCCAACTTCACCCTGGGCCCTGTGAGCCCCTCCCACGGGGGCCAGTAC  962

Query  883  AGGTGCTATGGTGCACACAACCTCTCCTCCGAGTGGTCGGCCCCCAGCGACCCCCTGAACATCCTGATGGCAGG  956
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  AGGTGCTATGGTGCACACAACCTCTCCTCCGAGTGGTCGGCCCCCAGCGACCCCCTGAACATCCTGATGGCAGG  1036

Query  957  ACAGATCTATGACACCGTCTCCCTGTCAGCACAGCCGGGCCCCACAGTGGCCTCAGGAGAGAACGTGACCCTGC  1030
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  ACAGATCTATGACACCGTCTCCCTGTCAGCACAGCCGGGCCCCACAGTGGCCTCAGGAGAGAACGTGACCCTGC  1110

Query 1031  TGTGTCAGTCATGGTGGCAGTTTGACACTTTCCTTCTGACCAAAGAAGGGGCAGCCCATCCCCCACTGCGTCTG  1104
            |||||||||||.||.|..|.||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  TGTGTCAGTCACGGGGTTATTTTGACACTTTCCTTCTGACCAAAGAAGGGGCAGCCCATCCCCCACTGCGTCTG  1184

Query 1105  AGATCAATGTACGGAGCTCATAAGTACCAGGCTGAATTCCCCATGAGTCCTGTGACCTCAGCCCACGCGGGGAC  1178
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  AGATCAATGTACGGAGCTCATAAGTACCAGGCTGAATTCCCCATGAGTCCTGTGACCTCAGCCCACGCGGGGAC  1258

Query 1179  CTACAGGTGCTACGGCTCATACAGCTCCAACCCCCACCTGCTGTCTTTCCCCAGTGAGCCCCTGGAACTCATGG  1252
            |||||||||||||||||||..|||||||||||||||||||||||||..||||||||||||||||||.|||||||
Sbjct 1259  CTACAGGTGCTACGGCTCACGCAGCTCCAACCCCCACCTGCTGTCTCACCCCAGTGAGCCCCTGGAGCTCATGG  1332

Query 1253  TCTCAGGACACTCTGGAGGCTCCAGCCTCCCACCCACAGGGCCGCCCTCCACACCTG--------GTCTGGGAA  1318
            |||||||||.|||||||||||||||||||||||||||||||||||||||||||||||        |.|..|||.
Sbjct 1333  TCTCAGGACCCTCTGGAGGCTCCAGCCTCCCACCCACAGGGCCGCCCTCCACACCTGCCTCACACGCCAAGGAT  1406

Query 1319  GATAC-CTGGAGGTTTTGAT-----TGGGGTCTCGGTGGCCTTCGTCCTGCTGCTCTTCCTC---CTCCTCTTC  1383
            .|.|| .|||||..|.|.||     ||||  |..||..|.|||.||||||.||   ||||||   .|.||.|| 
Sbjct 1407  TACACAGTGGAGAATCTCATCCGCATGGG--CATGGCAGGCTTGGTCCTGGTG---TTCCTCGGGATTCTGTT-  1474

Query 1384  CTCCTCCTCCGACG-TCAGCGTCACAGC-----AAA--CACAGGA--CATC-------TGACCA---GAGAAAG  1437
                  .|..||.| ||||   ||||||     |||  |.||.||  ||.|       |||.||   ||| |.|
Sbjct 1475  ------ATTTGAGGCTCAG---CACAGCCAGAGAAACCCCCAAGATGCAGCCGGGAGGTGAACAGCGGAG-AGG  1538

Query 1438  ACTGATT------TCCAGCGT-------CCTGCAGGGGCTG--CGGAGACAGAGCCCA-----------AGGAC  1485
            ||  |.|      |.||||||       ||| |||||.|.|  |.||   .||.||||           |||||
Sbjct 1539  AC--AATGCACCCTTCAGCGTGGTGGAGCCT-CAGGGACAGATCTGA---TGATCCCAGAAGGCTCTGGAGGAC  1606

Query 1486  A----GGGGCCTGCTGAGGAGG-------TCCAGCCCA---GCTG----------------CTGACGTCCAGGA  1529
            |    .||.|||.|.||||.||       |.|||.|||   .|||                ||||  ||     
Sbjct 1607  AATCTAGGACCTCCAGAGGGGGGTGAGATTTCAGGCCACACACTGTGGAAGGTAATCATGTCTGA--TC-----  1673

Query 1530  AGAAA------------ACC----------TCTATGCTGCCGTGAAGGACACACAGTCTGA-------GGA---  1571
            |.|||            |||          ||||||.|   |||||.|   |.|||| |||       |||   
Sbjct 1674  ACAAATTTTGGGTCTCCACCTTACTTCCAATCTATGTT---GTGAATG---CCCAGT-TGAGACCCACGGAAAA  1740

Query 1572  -----CAGGG--TGGAGCTGGACAGTCAGAGCCCACAC---------------GATGAAGACCCCCAGGCAGT-  1622
                 ||.||  ||.|  ||| |||||   .|||||.|               |||||    .||||||..|| 
Sbjct 1741  GAGCTCATGGCTTGTA--TGG-CAGTC---TCCCACCCTCATGTGTTCAATCTGATGA----TCCCAGGAGGTT  1804

Query 1623  ---GA-------------CGTATGC--CCCGGTGAAACACTC-------CAGTCCT-AGGAGAG----------  1660
               ||             |.|||||  .|.||    ||..||       ||.|||| |.|||||          
Sbjct 1805  CTGGAACAAAATCTACAGCCTATGCTTTCTGG----ACTATCTGTCGATCATTCCTGAAGAGAGGGATCAATGT  1874

Query 1661  ------------------------AAAT--------------------------GGCCTC---------TCC--  1673
                                    ||||                          ||.|||         |||  
Sbjct 1875  TGAGGTATTCATTTCACATGATGAAAATGACAATATCAAATGTCAGAGGTAGTAGGGCTCACGTAGAAATCCAA  1948

Query 1674  TCCCTCC----------------TCACT-------GTCTGGGGAA-----------TTCCTGGACACAAAGGAC  1713
            |.|.|||                |.|||       .|.|||||||           |.||..|..|.||||.|.
Sbjct 1949  TACATCCATGGTAGGACTGCAAATTACTTGAATCAATTTGGGGAAAATATCAGAAGTACCCAGTGAAAAAGAAG  2022

Query 1714  AGACA-----------GGTGG-----------AA--------------GAGGAC--AGGCAGATGGACAC----  1745
            |.|||           |||||           ||              |||| |  ||||.|..||||||    
Sbjct 2023  AAACATGGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGG-CTGAGGCGGGCGGACACGAGT  2095

Query 1746  TGAGG----------CTGCT------GCAT-CTGAAGCCTCC--------------------------------  1770
            |.|||          |.|||      .||| .||||.|| ||                                
Sbjct 2096  TCAGGAATTCGAGTCCAGCTTGGCCAACATAGTGAAACC-CCGTCTCTACTAAAAATACAAAACATTAGCTGGG  2168

Query 1771  --------CAGG--------ATGTGACCTACGC-----------CCAGCTGCACAGCTTGACCCT--TAGACGG  1815
                    ||||        ||.|.|.||||.|           .|||..|.|..||||||.|||  .||||||
Sbjct 2169  CGTGGTGGCAGGTGCCTGTAATTTCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGACGG  2242

Query 1816  AAGGCAACT--GAGCCTCCTCCATCCCAGGAAG--GGGAACCTCCAGCTGAGCCCA----GCATCTACGCCACT  1881
            || ||||.|  |.|||               ||  ||     |.||| ||||||.|    ||||    ..||||
Sbjct 2243  AA-GCAAGTTGGCGCC---------------AGTTGG-----TGCAG-TGAGCCAAGATGGCAT----TGCACT  2290

Query 1882  CTGGCCATCCAC--------------------------------------------------------------  1893
            |||||   |||.                                                              
Sbjct 2291  CTGGC---CCAGGTGACAGTACGAGACTTCATCTAAAAAAAAAAGAAAAAAAAAAAGAAGAGACACACAGCTAT  2361

Query 1894  --------------------------------------------------------------------------  1893
                                                                                      
Sbjct 2362  GAACACAGAGCACAGAACCTAGAGGAAAATGTGTTCATATGGTGAGGTTTCATTCACAACAACATGGACAGGAC  2435

Query 1894  --------------------------------------------------------------------------  1893
                                                                                      
Sbjct 2436  TGCTGCTCATATTACACAACAGCCATAAAACCCAAAAATACATCTAAAACAAAGGAAACATATGTGGTTCAATT  2509

Query 1894  --------------------------------------------------------------------------  1893
                                                                                      
Sbjct 2510  CCACCAAGGGATACTATGGGGCCGTGCAGAGGCACAGACAAAATCTACAAAGAGCAATGCAAACCAACCTTCCA  2583

Query 1894  --------------------------------------------------------------------------  1893
                                                                                      
Sbjct 2584  TCATGATGTTGAGTAAAGAAACAAGAGTATAAAAAGAAGGTGTGCACATGAAGCTCAAAAAGAGGCAGCATTTA  2657

Query 1894  --------------------------------------------------------------------------  1893
                                                                                      
Sbjct 2658  TTTTCTAGGGAGGCAAACTCAAAATAGACCCCATAAATAAAGGAAATAGATTATGTAATCCAAAATAGTGCTTG  2731

Query 1894  --------------------------------------------------------------------------  1893
                                                                                      
Sbjct 2732  CACATCAGGAAATACTGGAGGGTTCTGTTCAACATGGAAACTCCAAGGACCACTGGACGCGGGCACTGGAATGC  2805

Query 1894  --------------------------------------------------------------------------  1893
                                                                                      
Sbjct 2806  TGACTTTGATTTGGTGACCCTCAATCCACTTCGAGTTATTGGTAAATCACATAATTTTAATTTGATACGGAATA  2879

Query 1894  --------------------------------------------------------------------------  1893
                                                                                      
Sbjct 2880  ATCATACATGTTTCTTGGGAGCATGTGGTAATCTGATTCATCCATGCAATGTGTAACGATCCAATAAAGGTTCC  2953

Query 1894  ---------------------  1893
                                 
Sbjct 2954  CAGGACATTCATCACCCTGAA  2974

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