Nucleotide Global Alignment
Description
- Query:
- TRCN0000476797
- Subject:
- XR_001756516.1
- Aligned Length:
- 3055
- Identities:
- 1686
- Gaps:
- 1243
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACACCCTGTGTGTCTCTCTGTCCTGCCAGCACTGAGGGCTCATCCCTCTGCAGAGCGCCGGGTCACCGGGAGGA 74
Query 1 ------ATGACGCCCGCCCTCACAGCCCTGCTCTGCCTTGGGCTGAGTCTGGGCCCCAGGACCCGCGTGCAGGC 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 GACGCCATGACGCCCGCCCTCACAGCCCTGCTCTGCCTTGGGCTGAGTCTGGGCCCCAGGACCCGCGTGCAGGC 148
Query 69 AGGGCCCTTCCCCAAACCCACCCTCTGGGCTGAGCCAGGCTCTGTGATCAGCTGGGGGAGCCCCGTGACCATCT 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 AGGGCCCTTCCCCAAACCCACCCTCTGGGCTGAGCCAGGCTCTGTGATCAGCTGGGGGAGCCCCGTGACCATCT 222
Query 143 GGTGTCAGGGGAGCCTGGAGGCCCAGGAGTACCGACTGGATAAAGAGGGAAGCCCAGAGCCCTTGGACAGAAAT 216
|||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||.||||||||||
Sbjct 223 GGTGTCAGGGGAGCCTGGAGGCCCAGGAGTACCAACTGGATAAAGAGGGAAGCCCAGAGCCCTGGGACAGAAAT 296
Query 217 AACCCACTGGAACCCAAGAACAAGGCCAGATTCTCCATCCCATCCATGACAGAGCACCATGCGGGGAGATACCG 290
|||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||.|||||||||||
Sbjct 297 AACCCACTGGAACCCAAGAACAAGGCCAGATTCTCCATCCCATCCATGACACAGCACCATGCAGGGAGATACCG 370
Query 291 CTGCCACTATTACAGCTCTGCAGGCTGGTCAGAGCCCAGCGACCCCCTGGAGCTGGTGATGACAGGATTCTACA 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CTGCCACTATTACAGCTCTGCAGGCTGGTCAGAGCCCAGCGACCCCCTGGAGCTGGTGATGACAGGATTCTACA 444
Query 365 ACAAACCCACCCTCTCAGCCCTGCCCAGCCCTGTGGTGGCCTCAGGGGGGAATATGACCCTCCGATGTGGCTCA 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 ACAAACCCACCCTCTCAGCCCTGCCCAGCCCTGTGGTGGCCTCAGGGGGGAATATGACCCTCCGATGTGGCTCA 518
Query 439 CAGAAGGGATATCACCATTTTGTTCTGATGAAGGAAGGAGAACACCAGCTCCCCCGGACCCTGGACTCACAGCA 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CAGAAGGGATATCACCATTTTGTTCTGATGAAGGAAGGAGAACACCAGCTCCCCCGGACCCTGGACTCACAGCA 592
Query 513 GCTCCACAGTGGGGGGTTCCAGGCCCTGTTCCCTGTGGGCCCCGTGAACCCCAGCCACAGGTGGAGGTTCACAT 586
|||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||
Sbjct 593 GCTCCACAGTGGGGGGTTCCAGGCCCTGTTCCCTGTGGGCCCCGTGACCCCCAGCCACAGGTGGAGGTTCACAT 666
Query 587 GCTATTACTATTATATGAACACCCCCCAGGTGTGGTCCCACCCCAGTGACCCCCTGGAGATTCTGCCCTCAGGC 660
|||||||||||||||..|||||||||..||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GCTATTACTATTATACAAACACCCCCTGGGTGTGGTCCCACCCCAGTGACCCCCTGGAGATTCTGCCCTCAGGC 740
Query 661 GTGTCTAGGAAGCCCTCCCTCCTGACCCTGCAGGGCCCTGTCCTGGCCCCTGGGCAGAGCCTGACCCTCCAGTG 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GTGTCTAGGAAGCCCTCCCTCCTGACCCTGCAGGGCCCTGTCCTGGCCCCTGGGCAGAGCCTGACCCTCCAGTG 814
Query 735 TGGCTCTGATGTCGGCTACGACAGATTTGTTCTGTATAAGGAGGGGGAACGTGACTTCCTCCAGCGCCCTGGCC 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TGGCTCTGATGTCGGCTACGACAGATTTGTTCTGTATAAGGAGGGGGAACGTGACTTCCTCCAGCGCCCTGGCC 888
Query 809 AGCAGCCCCAGGCTGGGCTCTCCCAGGCCAACTTCACCCTGGGCCCTGTGAGCCGCTCCCACGGGGGCCAGTAC 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||
Sbjct 889 AGCAGCCCCAGGCTGGGCTCTCCCAGGCCAACTTCACCCTGGGCCCTGTGAGCCCCTCCCACGGGGGCCAGTAC 962
Query 883 AGGTGCTATGGTGCACACAACCTCTCCTCCGAGTGGTCGGCCCCCAGCGACCCCCTGAACATCCTGATGGCAGG 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 AGGTGCTATGGTGCACACAACCTCTCCTCCGAGTGGTCGGCCCCCAGCGACCCCCTGAACATCCTGATGGCAGG 1036
Query 957 ACAGATCTATGACACCGTCTCCCTGTCAGCACAGCCGGGCCCCACAGTGGCCTCAGGAGAGAACGTGACCCTGC 1030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 ACAGATCTATGACACCGTCTCCCTGTCAGCACAGCCGGGCCCCACAGTGGCCTCAGGAGAGAACGTGACCCTGC 1110
Query 1031 TGTGTCAGTCATGGTGGCAGTTTGACACTTTCCTTCTGACCAAAGAAGGGGCAGCCCATCCCCCACTGCGTCTG 1104
|||||||||||.||.|..|.||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 TGTGTCAGTCACGGGGTTATTTTGACACTTTCCTTCTGACCAAAGAAGGGGCAGCCCATCCCCCACTGCGTCTG 1184
Query 1105 AGATCAATGTACGGAGCTCATAAGTACCAGGCTGAATTCCCCATGAGTCCTGTGACCTCAGCCCACGCGGGGAC 1178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 AGATCAATGTACGGAGCTCATAAGTACCAGGCTGAATTCCCCATGAGTCCTGTGACCTCAGCCCACGCGGGGAC 1258
Query 1179 CTACAGGTGCTACGGCTCATACAGCTCCAACCCCCACCTGCTGTCTTTCCCCAGTGAGCCCCTGGAACTCATGG 1252
|||||||||||||||||||..|||||||||||||||||||||||||..||||||||||||||||||.|||||||
Sbjct 1259 CTACAGGTGCTACGGCTCACGCAGCTCCAACCCCCACCTGCTGTCTCACCCCAGTGAGCCCCTGGAGCTCATGG 1332
Query 1253 TCTCAGGACACTCTGGAGGCTCCAGCCTCCCACCCACAGGGCCGCCCTCCACACCTG--------GTCTGGGAA 1318
|||||||||.||||||||||||||||||||||||||||||||||||||||||||||| |.|..|||.
Sbjct 1333 TCTCAGGACCCTCTGGAGGCTCCAGCCTCCCACCCACAGGGCCGCCCTCCACACCTGCCTCACACGCCAAGGAT 1406
Query 1319 GATAC-CTGGAGGTTTTGAT-----TGGGGTCTCGGTGGCCTTCGTCCTGCTGCTCTTCCTC---CTCCTCTTC 1383
.|.|| .|||||..|.|.|| |||| |..||..|.|||.||||||.|| |||||| .|.||.||
Sbjct 1407 TACACAGTGGAGAATCTCATCCGCATGGG--CATGGCAGGCTTGGTCCTGGTG---TTCCTCGGGATTCTGTT- 1474
Query 1384 CTCCTCCTCCGACG-TCAGCGTCACAGC-----AAA--CACAGGA--CATC-------TGACCA---GAGAAAG 1437
.|..||.| |||| |||||| ||| |.||.|| ||.| |||.|| ||| |.|
Sbjct 1475 ------ATTTGAGGCTCAG---CACAGCCAGAGAAACCCCCAAGATGCAGCCGGGAGGTGAACAGCGGAG-AGG 1538
Query 1438 ACTGATT------TCCAGCGT-------CCTGCAGGGGCTG--CGGAGACAGAGCCCA-----------AGGAC 1485
|| |.| |.|||||| ||| |||||.|.| |.|| .||.|||| |||||
Sbjct 1539 AC--AATGCACCCTTCAGCGTGGTGGAGCCT-CAGGGACAGATCTGA---TGATCCCAGAAGGCTCTGGAGGAC 1606
Query 1486 A----GGGGCCTGCTGAGGAGG-------TCCAGCCCA---GCTG----------------CTGACGTCCAGGA 1529
| .||.|||.|.||||.|| |.|||.||| .||| |||| ||
Sbjct 1607 AATCTAGGACCTCCAGAGGGGGGTGAGATTTCAGGCCACACACTGTGGAAGGTAATCATGTCTGA--TC----- 1673
Query 1530 AGAAA------------ACC----------TCTATGCTGCCGTGAAGGACACACAGTCTGA-------GGA--- 1571
|.||| ||| ||||||.| |||||.| |.|||| ||| |||
Sbjct 1674 ACAAATTTTGGGTCTCCACCTTACTTCCAATCTATGTT---GTGAATG---CCCAGT-TGAGACCCACGGAAAA 1740
Query 1572 -----CAGGG--TGGAGCTGGACAGTCAGAGCCCACAC---------------GATGAAGACCCCCAGGCAGT- 1622
||.|| ||.| ||| ||||| .|||||.| ||||| .||||||..||
Sbjct 1741 GAGCTCATGGCTTGTA--TGG-CAGTC---TCCCACCCTCATGTGTTCAATCTGATGA----TCCCAGGAGGTT 1804
Query 1623 ---GA-------------CGTATGC--CCCGGTGAAACACTC-------CAGTCCT-AGGAGAG---------- 1660
|| |.||||| .|.|| ||..|| ||.|||| |.|||||
Sbjct 1805 CTGGAACAAAATCTACAGCCTATGCTTTCTGG----ACTATCTGTCGATCATTCCTGAAGAGAGGGATCAATGT 1874
Query 1661 ------------------------AAAT--------------------------GGCCTC---------TCC-- 1673
|||| ||.||| |||
Sbjct 1875 TGAGGTATTCATTTCACATGATGAAAATGACAATATCAAATGTCAGAGGTAGTAGGGCTCACGTAGAAATCCAA 1948
Query 1674 TCCCTCC----------------TCACT-------GTCTGGGGAA-----------TTCCTGGACACAAAGGAC 1713
|.|.||| |.||| .|.||||||| |.||..|..|.||||.|.
Sbjct 1949 TACATCCATGGTAGGACTGCAAATTACTTGAATCAATTTGGGGAAAATATCAGAAGTACCCAGTGAAAAAGAAG 2022
Query 1714 AGACA-----------GGTGG-----------AA--------------GAGGAC--AGGCAGATGGACAC---- 1745
|.||| ||||| || |||| | ||||.|..||||||
Sbjct 2023 AAACATGGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGG-CTGAGGCGGGCGGACACGAGT 2095
Query 1746 TGAGG----------CTGCT------GCAT-CTGAAGCCTCC-------------------------------- 1770
|.||| |.||| .||| .||||.|| ||
Sbjct 2096 TCAGGAATTCGAGTCCAGCTTGGCCAACATAGTGAAACC-CCGTCTCTACTAAAAATACAAAACATTAGCTGGG 2168
Query 1771 --------CAGG--------ATGTGACCTACGC-----------CCAGCTGCACAGCTTGACCCT--TAGACGG 1815
|||| ||.|.|.||||.| .|||..|.|..||||||.||| .||||||
Sbjct 2169 CGTGGTGGCAGGTGCCTGTAATTTCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGACGG 2242
Query 1816 AAGGCAACT--GAGCCTCCTCCATCCCAGGAAG--GGGAACCTCCAGCTGAGCCCA----GCATCTACGCCACT 1881
|| ||||.| |.||| || || |.||| ||||||.| |||| ..||||
Sbjct 2243 AA-GCAAGTTGGCGCC---------------AGTTGG-----TGCAG-TGAGCCAAGATGGCAT----TGCACT 2290
Query 1882 CTGGCCATCCAC-------------------------------------------------------------- 1893
||||| |||.
Sbjct 2291 CTGGC---CCAGGTGACAGTACGAGACTTCATCTAAAAAAAAAAGAAAAAAAAAAAGAAGAGACACACAGCTAT 2361
Query 1894 -------------------------------------------------------------------------- 1893
Sbjct 2362 GAACACAGAGCACAGAACCTAGAGGAAAATGTGTTCATATGGTGAGGTTTCATTCACAACAACATGGACAGGAC 2435
Query 1894 -------------------------------------------------------------------------- 1893
Sbjct 2436 TGCTGCTCATATTACACAACAGCCATAAAACCCAAAAATACATCTAAAACAAAGGAAACATATGTGGTTCAATT 2509
Query 1894 -------------------------------------------------------------------------- 1893
Sbjct 2510 CCACCAAGGGATACTATGGGGCCGTGCAGAGGCACAGACAAAATCTACAAAGAGCAATGCAAACCAACCTTCCA 2583
Query 1894 -------------------------------------------------------------------------- 1893
Sbjct 2584 TCATGATGTTGAGTAAAGAAACAAGAGTATAAAAAGAAGGTGTGCACATGAAGCTCAAAAAGAGGCAGCATTTA 2657
Query 1894 -------------------------------------------------------------------------- 1893
Sbjct 2658 TTTTCTAGGGAGGCAAACTCAAAATAGACCCCATAAATAAAGGAAATAGATTATGTAATCCAAAATAGTGCTTG 2731
Query 1894 -------------------------------------------------------------------------- 1893
Sbjct 2732 CACATCAGGAAATACTGGAGGGTTCTGTTCAACATGGAAACTCCAAGGACCACTGGACGCGGGCACTGGAATGC 2805
Query 1894 -------------------------------------------------------------------------- 1893
Sbjct 2806 TGACTTTGATTTGGTGACCCTCAATCCACTTCGAGTTATTGGTAAATCACATAATTTTAATTTGATACGGAATA 2879
Query 1894 -------------------------------------------------------------------------- 1893
Sbjct 2880 ATCATACATGTTTCTTGGGAGCATGTGGTAATCTGATTCATCCATGCAATGTGTAACGATCCAATAAAGGTTCC 2953
Query 1894 --------------------- 1893
Sbjct 2954 CAGGACATTCATCACCCTGAA 2974
