Nucleotide Global Alignment

Description

Query:
TRCN0000477053
Subject:
XM_017317588.1
Aligned Length:
4232
Identities:
1668
Gaps:
2323

Alignment

Query    1  ATGTCTGCGGAGAGCGGCCCTGGGACGAGATTGAGAAATCTGCCAGTAATGGGGGATGGACTAGAAACTTCCCA  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  AATGTCTACAACACAGGCCCAGGCCCAACCCCAGCCAGCCAACGCAGCCAGCACCAACCCCCCGCCCCCAGAGA  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  CCTCCAACCCTAACAAGCCCAAGAGGCAGACCAACCAACTGCAATACCTGCTCAGAGTGGTGCTCAAGACACTA  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  TGGAAACACCAGTTTGCATGGCCTTTCCAGCAGCCTGTGGATGCCGTCAAGCTGAACCTCCCTGATTACTATAA  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  GATCATTAAAACGCCTATGGATATGGGAACAATAAAGAAGCGCTTGGAAAACAACTATTACTGGAATGCTCAGG  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  AATGTATCCAGGACTTCAACACTATGTTTACAAATTGTTACATCTACAACAAGCCTGGAGATGACATAGTCTTA  444
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  445  ATGGCAGAAGCTCTGGAAAAGCTCTTCTTGCAAAAAATAAATGAGCTACCCACAGAAGAAACCGAGATCATGAT  518
            |||||||||||||||||.||||||||||||||||||||.|||||.||.||.|||||||||||.|||||||||||
Sbjct    1  ATGGCAGAAGCTCTGGAGAAGCTCTTCTTGCAAAAAATCAATGAACTGCCTACAGAAGAAACTGAGATCATGAT  74

Query  519  AGTCCAGGCAAAAGGAAGAGGACGTGGGAGGAAAGAAACAG---GGACAGCAAAACCTGGCGTTTCCACGGTAC  589
            ||||||||||||||||||||||||.||||||||||||||||   ||.|||||||.|||||.||.||||||||||
Sbjct   75  AGTCCAGGCAAAAGGAAGAGGACGAGGGAGGAAAGAAACAGGTAGGGCAGCAAAGCCTGGTGTATCCACGGTAC  148

Query  590  CAAACACAACTCAAGCATCGACTCCTCCGCAGACCCAGACCCCTCAGCCGAA---TCCTCCTCCTGTGCAGGCC  660
            |||||||||||||||||||.|||.||||||||||||||||.|||||||.|||   ||||||.||||||||||||
Sbjct  149  CAAACACAACTCAAGCATCAACTTCTCCGCAGACCCAGACGCCTCAGCAGAACCCTCCTCCACCTGTGCAGGCC  222

Query  661  ACGCCTCACCCCTTCCCTGCCGTCACCCCGGACCTCATCGTCCAGACCCCTGTCATGACAGTGGTGCCTCCCCA  734
            ||..||||||||||.|||||.||||||||.||||||||.|.||||.|.||||||||||||.|||||||.||.||
Sbjct  223  ACAACTCACCCCTTTCCTGCTGTCACCCCAGACCTCATTGCCCAGCCTCCTGTCATGACAATGGTGCCCCCTCA  296

Query  735  GCCACTGCAGACGCCCCCGCCAGTGCCCCCCCAGCCACAACCCCCACCCGCTCCAGCTCCCCAGCCCGTACAGA  808
            ||||||.|||||.||..|.||.||.|||||||||||||.|||||||||.|||||||.|||.|||||.||.||||
Sbjct  297  GCCACTTCAGACTCCTTCACCGGTACCCCCCCAGCCACCACCCCCACCTGCTCCAGTTCCACAGCCTGTGCAGA  370

Query  809  GCCACCCACCCATCATCGCGGCCACCCCACAGCCTGTGAAGACAAAGAAGGGAGTGAAGAGGAAAGCAGACACC  882
            |.|||||.||||||||.|||.|||||||.||||||||||||||||||||.||.|||||||||||||||||.|||
Sbjct  371  GTCACCCGCCCATCATTGCGACCACCCCCCAGCCTGTGAAGACAAAGAAAGGGGTGAAGAGGAAAGCAGATACC  444

Query  883  ACCACCCCCACCACCATTGACCCCATTCACGAGCCACCCTCGCTGCCCCCGGAGCCCAAGACCACCAAGCTGGG  956
            ||||||||.||||||||.|||||||||||.|||||||||||.|||.||||.||||||||||||.||||||||||
Sbjct  445  ACCACCCCTACCACCATCGACCCCATTCATGAGCCACCCTCACTGGCCCCAGAGCCCAAGACCGCCAAGCTGGG  518

Query  957  CCAGCGGCGGGAGAGCAGCCGGCCTGTGAAACCTCCAAAGAAGGACGTGCCCGACTCTCAGCAGCACCCAGCAC  1030
            .|..|||||||||||||||.|.||||||||.||||||||||||||.||.||.|||||.|||||||||||||..|
Sbjct  519  TCCTCGGCGGGAGAGCAGCAGACCTGTGAAGCCTCCAAAGAAGGATGTACCGGACTCACAGCAGCACCCAGGGC  592

Query 1031  CAGAGAAGAGCAGCAAGGTCTCGGAGCAGCTCAAGTGCTGCAGCGGCATCCTCAAGGAGATGTTTGCCAAGAAG  1104
            |||||||||||||||||.||||.||||||||.|||||||||||.|||||||||||||||||||||||||||||.
Sbjct  593  CAGAGAAGAGCAGCAAGATCTCTGAGCAGCTAAAGTGCTGCAGTGGCATCCTCAAGGAGATGTTTGCCAAGAAA  666

Query 1105  CACGCCGCCTACGCCTGGCCCTTCTACAAGCCTGTGGACGTGGAGGCACTGGGCCTACACGACTACTGTGACAT  1178
            ||.||.|||||.||||||||.|||||||||||||||||.||||||||||||||.||.|||||||||||||||||
Sbjct  667  CATGCTGCCTATGCCTGGCCTTTCTACAAGCCTGTGGATGTGGAGGCACTGGGTCTGCACGACTACTGTGACAT  740

Query 1179  CATCAAGCACCCCATGGACATGAGCACAATCAAGTCTAAACTGGAGGCCCGTGAGTACCGTGATGCTCAGGAGT  1252
            ||||||.||.||||||||||||||||||||||||||||||||.|||.||||.||||||.|.|||||.|||||.|
Sbjct  741  CATCAAACATCCCATGGACATGAGCACAATCAAGTCTAAACTAGAGTCCCGAGAGTACAGAGATGCCCAGGAAT  814

Query 1253  TTGGTGCTGACGTCCGATTGATGTTCTCCAACTGCTATAAGTACAACCCTCCTGACCATGAGGTGGTGGCCATG  1326
            ||||||||||.||||||||||||||||||||||||||.|||||||||||.|||||||||||.|||||.||||||
Sbjct  815  TTGGTGCTGATGTCCGATTGATGTTCTCCAACTGCTACAAGTACAACCCCCCTGACCATGAAGTGGTAGCCATG  888

Query 1327  GCCCGCAAGCTCCAGGATGTGTTCGAAATGCGCTTTGCCAAGATGCCGGACGAGCCTGAGGAGCCAGTGGTGGC  1400
            ||.||.||.||||||||||||||.|||||||||||||||||||||||.||.||||||||.||||||||.||..|
Sbjct  889  GCTCGAAAACTCCAGGATGTGTTTGAAATGCGCTTTGCCAAGATGCCTGATGAGCCTGAAGAGCCAGTTGTTAC  962

Query 1401  CGTGTCCTCCCCGGCAGTGCCCCCTCCCACCAAGGTTGTGGCCCCGCCCTCATCCAGCGACAGCAGCAGCGATA  1474
            .||||||||.||.||||||||.||.||.||.|||||.||.|||||.||||||||.||.||||||||||||||.|
Sbjct  963  AGTGTCCTCTCCTGCAGTGCCACCCCCTACAAAGGTGGTAGCCCCACCCTCATCTAGTGACAGCAGCAGCGACA  1036

Query 1475  GCTCCTCGGACAGTGACAGTTCGACTGATGACTCTGAGGAGGAGCGAGCCCAGCGGCTGGCTGAGCTCCAGGAG  1548
            |.||.||.|||||.||||||||.|||||.|||||||||||.|||||||||||||||||||||||.||||||||.
Sbjct 1037  GTTCTTCCGACAGCGACAGTTCCACTGACGACTCTGAGGAAGAGCGAGCCCAGCGGCTGGCTGAACTCCAGGAA  1110

Query 1549  CAGCTCAAAGCCGTGCACGAGCAGCTTGCAGCCCTCTCTCAGCCCCAGCAGAACAAACCAAAGAAAAAGGAGAA  1622
            ||||||||.||||||||.||||||||||||||||||||.|||||||||||||||||||||||||||||||||||
Sbjct 1111  CAGCTCAAGGCCGTGCATGAGCAGCTTGCAGCCCTCTCACAGCCCCAGCAGAACAAACCAAAGAAAAAGGAGAA  1184

Query 1623  AGACAAGAAGGAAAAGAAAAAAGAAAAGCACAAAAGGAAAGAGGAAGTGGAAGAGAATAAAAAAAGCAAAGCCA  1696
            .||||||||||||||||||||.|||||||||||||.||||||.||||||||.||.|||||||||||||||.|||
Sbjct 1185  GGACAAGAAGGAAAAGAAAAAGGAAAAGCACAAAAAGAAAGAAGAAGTGGAGGAAAATAAAAAAAGCAAAACCA  1258

Query 1697  AGGAACCTCCTCCTAAAAAGACGAAGAAAAATAATAGCAGCAACAGCAATGTGAGCAAGAAGGAGCCAGCGCCC  1770
            ||||||.||||||.||||||||.|||||||||||.|||||||||||||||||||||||||||||.||||..|||
Sbjct 1259  AGGAACTTCCTCCCAAAAAGACAAAGAAAAATAACAGCAGCAACAGCAATGTGAGCAAGAAGGAACCAGTACCC  1332

Query 1771  ATGAAGAGCAAGCCCCCTCCCACGTATGAGTCGGAGGAAGAGGACAAGTGCAAGCCTATGTCCTATGAGGAGAA  1844
            |.|||||.||||||.||||||||.|||||.||.||.||.|||||.|||||.|||||.|||||.|||||||||||
Sbjct 1333  ACGAAGACCAAGCCGCCTCCCACATATGAATCAGAAGAGGAGGATAAGTGTAAGCCCATGTCTTATGAGGAGAA  1406

Query 1845  GCGGCAGCTCAGCTTGGACATCAACAAGCTCCCCGGCGAGAAGCTGGGCCGCGTGGTGCACATCATCCAGTCAC  1918
            |||||||||.||..|.||.||||||||.||.||.||.||||||||.|||||.||.||.|||||.||.||||||.
Sbjct 1407  GCGGCAGCTAAGTCTAGATATCAACAAACTTCCTGGTGAGAAGCTAGGCCGTGTAGTACACATAATTCAGTCAA  1480

Query 1919  GGGAGCCCTCCCTGAAGAATTCCAACCCCGACGAGATTGAAATCGACTTTGAGACCCTGAAGCCGTCCACACTG  1992
            ||||.||.||.||.||.||.|||||||||||.||||||||.||.||||||||||||||||||||.||.|||||.
Sbjct 1481  GGGAACCATCACTTAAAAACTCCAACCCCGATGAGATTGAGATTGACTTTGAGACCCTGAAGCCATCTACACTA  1554

Query 1993  CGTGAGCTGGAGCGCTATGTCACCTCCTGTTTGCGGAAGAAAAGGAAACCTCAAGCTGAGAAAGTTGATGTGAT  2066
            ||.|||.|||||||.||||||||||||||||||||||||||||||||||||||||||||.||||||||.|||||
Sbjct 1555  CGAGAGTTGGAGCGATATGTCACCTCCTGTTTGCGGAAGAAAAGGAAACCTCAAGCTGAAAAAGTTGACGTGAT  1628

Query 2067  TGCCGGCTCCTCCAAGATGAAGGGCTTCTCGTCCTCAGAGTCGGAGAGCTCCAGTGAGTCCAGCTCCTCTGACA  2140
            |||.||.||.||||||||||||||.|||||.|||||.||||||||||||.||||.||.||||||||||||||||
Sbjct 1629  TGCTGGTTCTTCCAAGATGAAGGGATTCTCATCCTCTGAGTCGGAGAGCACCAGCGAATCCAGCTCCTCTGACA  1702

Query 2141  GCGAAGACTCCGAAACA------GCT----------------------------------------------TT  2162
            |.||||||||.||||||      |||                                              .|
Sbjct 1703  GTGAAGACTCTGAAACAGAGATGGCTCCCAAGTCAAAAAAGAAGGGGCACACTGGGAGGGACCAGAAAAAGCAT  1776

Query 2163  CTGCACCA-------------GTGGAG--------ACTTCGTGT-CCCCAG----------------------G  2192
            |..|||||             .||.||        |..||.||| ||||||                      .
Sbjct 1777  CATCACCATCACCATCCACAGATGCAGCCAGCCCCAGCTCCTGTGCCCCAGCAGCCGCCCCCACCTCCACAGCA  1850

Query 2193  GCCT--TCC----------CCGTATCA-CAGTCACGTGCAG--------------------TGCGGCC-----G  2228
            ||||  |||          |||.|.|| ||| ||   ||||                    |.||.||     |
Sbjct 1851  GCCTCCTCCACCCCCACCTCCGCAGCAGCAG-CA---GCAGCAACCTCCACCCCCACCACCTCCGCCCTCCATG  1920

Query 2229  CTTCAG-----------GGAGATG-------------------------CTTCGCTGGT-----TTCTGGTGGA  2261
            |..|||           .|.||||                         ||.|.|.|||     |.||||    
Sbjct 1921  CCACAGCAGACTGCCCCAGCGATGAAGTCCTCGCCCCCACCCTTCATCACTGCCCAGGTCCCCGTCCTGG----  1990

Query 2262  TGTGGAGCAGACTGCAGCTGGCCA----------------------GCCGCATC-----GCCAGTCT-------  2301
                     .||..||||| ||||                      |||.|.||     |||..|||       
Sbjct 1991  ---------AACCACAGCT-GCCAGGCAGTGTCTTTGACCCTATTGGCCACTTCACCCAGCCCATCTTGCACCT  2054

Query 2302  ---GCTGCTGGCCCTGC--CATCACCTGGGCCCCAGCCATTGCCT---------ACCCCTCCCCAGAGTGTGCT  2361
               ||.||.||..||||  |.||||||  ||||||||||   |||         ||.||.|||||      .||
Sbjct 2055  GCCGCAGCCGGAGCTGCCTCCTCACCT--GCCCCAGCCA---CCTGAGCACAGCACTCCACCCCA------TCT  2117

Query 2362  C------GTTGCTGTGTTGGCTGCTCC-----------------------------------------------  2382
            |      ..|||||||.|..||.||||                                               
Sbjct 2118  CAACCAGCATGCTGTGGTCTCTCCTCCAGCTTTGCACAATGCGCTGCCCCAACAGCCATCTCGGCCCAGTAACC  2191

Query 2383  --------------------------------------------------------------------------  2382
                                                                                      
Sbjct 2192  GAGCTGCTGCTCTGCCCCCAAAGCCTACCCGACCCCCAGCTGTGTCCCCTGCCCTGGCCCAGCCCCCCCTGCTC  2265

Query 2383  --------------------------------------------------------------------------  2382
                                                                                      
Sbjct 2266  CCACAACCACCAATGGCTCAGCCCCCCCAAGTGCTGCTGGAGGATGAAGAGCCACCTGCCCCACCCCTCACCTC  2339

Query 2383  --------------------------------------------------------------------------  2382
                                                                                      
Sbjct 2340  CATGCAGATGCAGTTGTACCTACAGCAGCTGCAGAAGGTGCAGCCTCCCACACCACTACTCCCTTCCGTGAAGG  2413

Query 2383  --------------------------------------------------------------------------  2382
                                                                                      
Sbjct 2414  TGCAGTCCCAACCCCCACCGCCTTTGCCGCCTCCACCCCACCCTTCTGTGCAGCAGCAGCAGCTCCAGCCACAG  2487

Query 2383  --------------------------------------------------------------------------  2382
                                                                                      
Sbjct 2488  CCACCGCCACCCCCACCTCCTCAGCCACAGCCACCACCCCAGCAACAACACCAGCCTCCACCACGACCAGTTCA  2561

Query 2383  --------------------------------------------------------------------------  2382
                                                                                      
Sbjct 2562  CTTGCCATCCATGCCCTTTTCTGCTCATATTCAGCAGCCCCCACCACCCCCAGGACAGCAACCTACTCACCCAC  2635

Query 2383  --------------------------------------------------------------------------  2382
                                                                                      
Sbjct 2636  CCCCAGGACAGCAGCCCCCACCACCACAGCCTGCCAAGCCCCAGCAAGTCATCCAGCATCACCCTTCCCCCCGG  2709

Query 2383  --------------------------------------------------------------------------  2382
                                                                                      
Sbjct 2710  CACCACAAGTCAGACCCCTACTCAGCTGGTCATCTTCGTGAGGCTCCCTCTCCGCTTATGATACATTCCCCTCA  2783

Query 2383  --------------------------------------------------------------------------  2382
                                                                                      
Sbjct 2784  GATGCCACAGTTCCAGAGCCTGACCCATCAGTCTCCTCCCCAGCAAAACGTCCAGCCTAAGAAGCAGGTAAAGG  2857

Query 2383  --------------------------------------------------------------------------  2382
                                                                                      
Sbjct 2858  GCAGGGCTGAGCCACAGCCACCAGGGCCAGTCATGGGCCAAGGCCAGGGATGCCCACCTGCCTCACCGGCTGCC  2931

Query 2383  --------------------------------------------------------------------------  2382
                                                                                      
Sbjct 2932  GTGCCTATGCTGTCCCAGGAGCTGCGACCACCTTCAGTCGTCCAGCCCCAGCCCCTGGTGGTAGTAAAGGAGGA  3005

Query 2383  --------------------------------------------------------------------------  2382
                                                                                      
Sbjct 3006  GAAGATTCACTCACCAATCATTCGCAGCGAGCCTTTCAGCACCTCACTTCGACCAGAGCCCCCCAAGCACCCAG  3079

Query 2383  --------------------------------------------------------------------------  2382
                                                                                      
Sbjct 3080  AGAACATCAAGGCCCCAGTCCACCTGCCCCAGCGGCCTGAGATGAAGCCTGTAGACATAGGGAGGCCTGTGATC  3153

Query 2383  --------------------------------------------------------------------------  2382
                                                                                      
Sbjct 3154  CGGCCTCCAGAGCAGAGTGCACCCCCACCAGGGGCCCCTGACAAGGACAAACAGAAGCAGGAGCCAAAAACACC  3227

Query 2383  --------------------------------------------------------------------------  2382
                                                                                      
Sbjct 3228  AGTGGCACCCAAAAAGGACCTGAAAATTAAGAACATGGGCTCCTGGGCCAGCCTGGTACAGAAGCATCCGACCA  3301

Query 2383  --------------------------------------------------------------------------  2382
                                                                                      
Sbjct 3302  CCCCATCCTCCACAGCCAAGTCCTCAAGTGACAGCTTTGAGCATTTCCGCCGTGCTGCTCGGGAGAAGGAGGAG  3375

Query 2383  --------------------------------------------------------------------------  2382
                                                                                      
Sbjct 3376  AGGGAAAAGGCCCTGAAGGCTCAGGCTGAGCATGCAGAGAAGGAGAAGGAGCGGCTGAGGCAGGAGCGCATGAG  3449

Query 2383  --------------------------------------------------------------------------  2382
                                                                                      
Sbjct 3450  GAGCCGAGAGGATGAAGATGCGCTGGAACAGGCACGTCGAGCCCATGAGGAGGCACGACGGCGCCAGGAGCAGC  3523

Query 2383  --------------------------------------------------------------------------  2382
                                                                                      
Sbjct 3524  AGCAGCAGCAGCAGCAGCAGAGACAGGAGCAGCAGCAGCAGCAGCAGCAGGCAGCTGCTGTGGCCGCTGCCTCT  3597

Query 2383  --------------------------------------------------------------------------  2382
                                                                                      
Sbjct 3598  GCCCCCCAGGCCCAGAGCTCCCAGCCCCAGTCTATGCTGGACCAGCAGAGGGAGTTGGCCCGGAAACGAGAGCA  3671

Query 2383  --------------------------------------------------------------------------  2382
                                                                                      
Sbjct 3672  GGAGCGGAGGCGCAGGGAGGCAATGGCAGCTACAATTGACATGAATTTCCAGAGTGATCTTTTGTCAATATTTG  3745

Query 2383  --------------  2382
                          
Sbjct 3746  AAGAAAATCTTTTT  3759

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