Nucleotide Global Alignment

Description

Query:
TRCN0000477220
Subject:
NR_136685.2
Aligned Length:
4391
Identities:
1349
Gaps:
2994

Alignment

Query    1  ATGGCGGATTTCGAAGATTTGAGGAATATGGTTTCTAGTTTTAGGGTTTCTGAACTACAAGTATTACTAGGCTT  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  TGCTGGACGGAATAAAAGTGGACGCAAGCATGACCTCCTGATGAGGGCGCTGCATTTATTGAAGAGCGGCTGCA  148
                                 |||      ||||          ||||.|.||..|        ||||||.||.
Sbjct    1  ---------------------ACG------TGAC----------GGGCCCGGCTGT--------AGCGGCGGCG  29

Query  149  GCCCTGCGGTTCAGATTAAAATCCGAGAATTGTATAGACGCCGATATCCACGAACTCTTGAAGGACTTTCTGAT  222
            |||  ||||              ||                              |||| |||           
Sbjct   30  GCC--GCGG--------------CG------------------------------TCTT-AAG-----------  45

Query  223  TTATCCACAATCAAATCATCGGTTTTCAGT-TTGGATGGTGGCTCATCACCTGTAGAACCTGACTTGGCCGTGG  295
                               |||....|||| ..||||||||         |||  ||..|.|....||||||||
Sbjct   46  -------------------CGGCGCCCAGTGCAGGATGGTG---------CTG--GAGGCGGCGGCGGCCGTGG  89

Query  296  CTGGAATCCAC-TCGTTGCCTTCCACTTCAGTTACACCTCACTCACCATCCTCTCCTGTTGGTTCTGTGCTGCT  368
             |||...|..| ||||||.|..|..|...||                            |||    ||||.|| 
Sbjct   90  -TGGCGGCAGCGTCGTTGGCGGCAGCGGGAG----------------------------TGG----GTGCGGC-  129

Query  369  TCAAGATACTAAGCCCACATTTGAGATGCAGCAGC--CATCTCCCCCAATTCCTCCTGTCCATCCTGATGTGCA  440
                                      .|||||.||  |..|.|||.|                      |.|..
Sbjct  130  --------------------------GGCAGCGGCGGCGGCGCCCGC----------------------GGGTG  155

Query  441  GT-TAAAAAATCTGCCCTTTTATGATGTCCTTGATGTTCTCATCAAGCCCACGAGTTTA-GTTCAAAGCAGTAT  512
            || |||||    ||.|      .|||.|                    |.|.|||||.| ||||||||||||||
Sbjct  156  GTATAAAA----TGGC------GGATTT--------------------CGAAGAGTTGAGGTTCAAAGCAGTAT  199

Query  513  TCAGCGATTTCAAGAGAAGTTTTTTATTTTTGCTTTGACACCTCAACAAGTTAGAGAGATATGCATATCCAGGG  586
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  200  TCAGCGATTTCAAGAGAAGTTTTTTATTTTTGCTTTGACACCTCAACAAGTTAGAGAGATATGCATATCCAGGG  273

Query  587  ATTTTTTGCCAGGTGGTAGGAGAGATTATACAGTCCAAGTTCAGTTGAGACTTTGCCTGGCAGAGACAAGTTGC  660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  274  ATTTTTTGCCAGGTGGTAGGAGAGATTATACAGTCCAAGTTCAGTTGAGACTTTGCCTGGCAGAGACAAGTTGC  347

Query  661  CCTCAAGAAGATAACTATCCAAATAGTCTATGTATAAAAGTAAATGGGAAGCTATTTCCTTTGCCTGGCTATGC  734
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  348  CCTCAAGAAGATAACTATCCAAATAGTCTATGTATAAAAGTAAATGGGAAGCTATTTCCTTTGCCTGGCTATGC  421

Query  735  ACCACCGCCTAAAAATGGGATTGAACAGAAGCGCCCTGGACGCCCCTTGAATATTACATCTTTAGTTAGGTTAT  808
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  422  ACCACCGCCTAAAAATGGGATTGAACAGAAGCGCCCTGGACGCCCCTTGAATATTACATCTTTAGTTAGGTTAT  495

Query  809  CTTCAGCTGTGCCAAACCAAATTTCCATTTCTTGGGCATCAGAAATTGGGAAGAATTACTCTATGTCTGTATAT  882
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  496  CTTCAGCTGTGCCAAACCAAATTTCCATTTCTTGGGCATCAGAAATTGGGAAGAATTACTCTATGTCTGTATAT  569

Query  883  CTTGTACGGCAGCTTACATCAGCCATGTTATTACAGAGATTAAAAATGAAAGGTATTAGAAACCCTGATCATTC  956
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  570  CTTGTACGGCAGCTTACATCAGCCATGTTATTACAGAGATTAAAAATGAAAGGTATTAGAAACCCTGATCATTC  643

Query  957  CAGAGCACTAATTAAAGAAAAACTTACTGCAGATCCTGATAGTGAAATTGCTACAACTAGCCTTCGGGTATCCT  1030
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  644  CAGAGCACTAATTAAAGAAAAACTTACTGCAGATCCTGATAGTGAAATTGCTACAACTAGCCTTCGGGTATCCT  717

Query 1031  TGATGTGCCCTTTAGGAAAAATGAGGCTGACAATCCCATGCCGTGCAGTGACTTGTACACATCTGCAGTGTTTT  1104
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  718  TGATGTGCCCTTTAGGAAAAATGAGGCTGACAATCCCATGCCGTGCAGTGACTTGTACACATCTGCAGTGTTTT  791

Query 1105  GATGCTGCCCTCTATCTACAAATGAATGAGAAAAAGCCCACCTGGATTTGTCCTGTGTGTGACAAAAAAGCTGC  1178
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  792  GATGCTGCCCTCTATCTACAAATGAATGAGAAAAAGCCCACCTGGATTTGTCCTGTGTGTGACAAAAAAGCTGC  865

Query 1179  CTATGAAAGTCTAATATTAGATGGGCTTTTTATGGAAATTCTCAATGACTGTTCTGATGTAGATGAGATCAAAT  1252
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  866  CTATGAAAGTCTAATATTAGATGGGCTTTTTATGGAAATTCTCAATGACTGTTCTGATGTAGATGAGATCAAAT  939

Query 1253  TCCAAGAAGATGGTTCTTGGTGTCCAATGAGACCGAAGAAAGAAGCTATGAAAGTATCCAGCCAACCGTGTACA  1326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  940  TCCAAGAAGATGGTTCTTGGTGTCCAATGAGACCGAAGAAAGAAGCTATGAAAGTATCCAGCCAACCGTGTACA  1013

Query 1327  AAAATAGAAAGTTCAAGCGTCCTCAGTAAGCCTTGTTCAGTGACTGTAGCCAGTGAGGCAAGCAAGAAGAAAGT  1400
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014  AAAATAGAAAGTTCAAGCGTCCTCAGTAAGCCTTGTTCAGTGACTGTAGCCAGTGAGGCAAGCAAGAAGAAAGT  1087

Query 1401  AGATGTTATTGATCTTACAATAGAAAGCTCTTCTGACGAAGAGGAAGACCCTCCTGCCAAAAGGAAATGCATCT  1474
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1088  AGATGTTATTGATCTTACAATAGAAAGCTCTTCTGACGAAGAGGAAGACCCTCCTGCCAAAAGGAAATGCATCT  1161

Query 1475  TTATGTCAGAAACACAAAGCAGCCCAACCAAAGGGGTTCTCATGTATCAGCCATCTTCTGTAAGGGTGCCCAGT  1548
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1162  TTATGTCAGAAACACAAAGCAGCCCAACCAAAGGGGTTCTCATGTATCAGCCATCTTCTGTAAGGGTGCCCAGT  1235

Query 1549  GTGACTTCGGTTGATCCTGCTGCTATTCCGCCTTCATTAACAGACTACTCAGTACCATTCCACCATACGCCAAT  1622
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1236  GTGACTTCGGTTGATCCTGCTGCTATTCCGCCTTCATTAACAGACTACTCAGTACCATTCCACCATACGCCAAT  1309

Query 1623  ATCAAGCATGTCATCAGATTTGCCAGGAGAACAAAGAAGAAATGATATTAATAATGAACTGAAGCTTGGAACAT  1696
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310  ATCAAGCATGTCATCAGATTTGCCAGGAGAACAAAGAAGAAATGATATTAATAATGAACTGAAGCTTGGAACAT  1383

Query 1697  CTTCTGATACTGTGCAACAG------------------------------------------------------  1716
            ||||||||||||||||||||                                                      
Sbjct 1384  CTTCTGATACTGTGCAACAGTGAATACAAAATAAAACAAATAATTTGTATTTATGGAGTGGAAAACAGCTTATT  1457

Query 1717  --------------------------------------------------------------------------  1716
                                                                                      
Sbjct 1458  TCAAGGAAAAATATGACTGCCTTATTATTGCTAGTGCCATATTGTCAGGTGCGAATGGTGCTCAAAAGTTGTAT  1531

Query 1717  --------------------------------------------------------------------------  1716
                                                                                      
Sbjct 1532  CATTAAAATTTGAAAGTGCTAAACATTTACATATTTAATCATGTAGCAGTTATGTTTTGTTAAAAGTTTATGAC  1605

Query 1717  --------------------------------------------------------------------------  1716
                                                                                      
Sbjct 1606  TCAAATAAGGAAAATGTGTTGTCATCAATGAGAAAAAATCTAATGAGTCAATTTCACAGTGAAGCACTTAAAAT  1679

Query 1717  --------------------------------------------------------------------------  1716
                                                                                      
Sbjct 1680  TTTTAAATTAAAATTTTATCAGTGTTAATAAAATAATGTTAACACTACCTGCTTTTTAGTTAAAAGTAATTGAG  1753

Query 1717  --------------------------------------------------------------------------  1716
                                                                                      
Sbjct 1754  CATTTTCAACCATGAAATACTTCGGAGGGCATAAAAATATATCAGTATGACACGCTGCAGTTGAAACTTATGGT  1827

Query 1717  --------------------------------------------------------------------------  1716
                                                                                      
Sbjct 1828  GAAATAAGAAACAGCATTTTGCTAAACTTACGAAACAAGGCAGTAAAATTTTAATCACTACTGATGAAACTTGA  1901

Query 1717  --------------------------------------------------------------------------  1716
                                                                                      
Sbjct 1902  TTTTATATAAGAGTTTTAATATTCTGCTTAAAATGTAAAATGCAAGAAGACTTTGATGGTTTCGTTTTTTGTTA  1975

Query 1717  --------------------------------------------------------------------------  1716
                                                                                      
Sbjct 1976  GAAAGAATAACATCTAAAATACCATATCAAACTTCACTGTTAGTACTTGAGAAAAAAATGGTTTCAGTGAGAGA  2049

Query 1717  --------------------------------------------------------------------------  1716
                                                                                      
Sbjct 2050  AATATTTACATTAAACAGGTTTTATATAGACAGCACCCTTGTAATGCTTGGTAAACAATCTAGAATTCCAACCA  2123

Query 1717  --------------------------------------------------------------------------  1716
                                                                                      
Sbjct 2124  ATATTTTAGAAAAATTTCTAGGTATTTTATTATGGTGTTGTATAAGTCACCACATTCAATTTTCCGTGGATGAG  2197

Query 1717  --------------------------------------------------------------------------  1716
                                                                                      
Sbjct 2198  GTATCAATATACAGATAAGTAAATCTCTTAATTGTTTTCTAAATAAACTTTATATTTACCACACACATGAAATC  2271

Query 1717  --------------------------------------------------------------------------  1716
                                                                                      
Sbjct 2272  ATCAAAGAGAATTACAGTACATCTGAAGAACTGGAATTGAAATAACAAAAATAGGATCCTCAGTGGGTATTCTC  2345

Query 1717  --------------------------------------------------------------------------  1716
                                                                                      
Sbjct 2346  TGGTGATAGAGCTTCAATTTTTAATTTCAATTAAAATAAATAGGCTTGATATAATTTTCAAACTGTTTTATATC  2419

Query 1717  --------------------------------------------------------------------------  1716
                                                                                      
Sbjct 2420  AAGCTTGCGTATTTTAATTGAAATTCTGAAATTGAAATAGTTGAACATTTAGAAAATGAGCATTTTTGAGTGGC  2493

Query 1717  --------------------------------------------------------------------------  1716
                                                                                      
Sbjct 2494  TTGGCTTCAGTACACAATATTCCAACACCATTGTCAATACTTAGCGTTATAAAAAGGTTTCAGTTACTAACATG  2567

Query 1717  --------------------------------------------------------------------------  1716
                                                                                      
Sbjct 2568  AACTGAGAGATACAGCAAATATTAAAGATGATTGAACATATGAAACTGAAAAACTATAAAAAGGTAGAAGCTAT  2641

Query 1717  --------------------------------------------------------------------------  1716
                                                                                      
Sbjct 2642  TGTAAAAATGAAGAAAACTGAAAAACTGAAAAGATAAGAAGTTACTGTAAAAAGAAAACGGTTATACCATTTGA  2715

Query 1717  --------------------------------------------------------------------------  1716
                                                                                      
Sbjct 2716  AGCAGAACAAAATGTTCCAATAAACTTTTTTTACTTAATAATAGAAATATTGAAAATGCAAAACTCTGAAGGTA  2789

Query 1717  --------------------------------------------------------------------------  1716
                                                                                      
Sbjct 2790  TTACAAGGGCTAGACAAATTTTGAATTGTTTGGCATAAGAAGGGAGAGGATTTATTGAATATTATTAATATGAA  2863

Query 1717  --------------------------------------------------------------------------  1716
                                                                                      
Sbjct 2864  GACAAAATCTGCTTATTGAGATATCTCACCTATTATCATTTTAATAGAGAAGTCATTGGAAAAGTTTGTTGTAA  2937

Query 1717  --------------------------------------------------------------------------  1716
                                                                                      
Sbjct 2938  TTCTCTTTGGTTTAGTATTGGCTCAAACCACTGTGTCATATAGCTAGTGACAGACATATGAAATGAAAAATTAC  3011

Query 1717  --------------------------------------------------------------------------  1716
                                                                                      
Sbjct 3012  AGCAAGCTGGGTGCGGTGGCTTATGTCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGAGGATCACTTGAGC  3085

Query 1717  --------------------------------------------------------------------------  1716
                                                                                      
Sbjct 3086  TCTGGAGTTCAAAACCAACCTAGGCAACATAGCGAGACCCTCTCTCTACAAAAAAAAAATAATAATAATAATTA  3159

Query 1717  --------------------------------------------------------------------------  1716
                                                                                      
Sbjct 3160  GCTGGGCATAGTGACACACACCTGTAGCTCCTGCTTCTTGCGAAGCTGAGGCCAGAAGGTAAAGGCTACAGTTA  3233

Query 1717  --------------------------------------------------------------------------  1716
                                                                                      
Sbjct 3234  CCTATGATTGTGCCTCTGCACTCCAGCCTGGGCAACAGAGCAGACTCAGTGTCTCCCAAAAAAAGGAAAAAAAA  3307

Query 1717  --------------------------------------------------------------------------  1716
                                                                                      
Sbjct 3308  AAAATCTGTAGCAACAATTTTCAAAAAGGCTTTAGAAATCGTTGGAATGATTTCTTTCAAATGATTGGTGCTAT  3381

Query 1717  --------------------------------------------------------------------------  1716
                                                                                      
Sbjct 3382  AGCTTGTATCACTTGATAAGCATTTTTGTAATACCCTTATTTGGAGATTATAAGAGAATAAATATACTTAAATT  3455

Query 1717  --------------------------------------------------------------------------  1716
                                                                                      
Sbjct 3456  TTTTGAGTTATAAATTCATACTGGTTAGTAGATATTTTAAATGTACCCACTGATATTCTCTATTTTGCATAAAA  3529

Query 1717  --------------------------------------------------------------------------  1716
                                                                                      
Sbjct 3530  GCATAATGTCAGACTTTCTCTGTGTGGTGGTTATATTCGGGGTGTCTCTGAATGCCAGCATAAAAATTCACGGA  3603

Query 1717  --------------------------------------------------------------------------  1716
                                                                                      
Sbjct 3604  ATTGAATAGAAATTGGCCTGTCTTAATGACCTATGGTTTCTTTTTTAATGTTTTGAAATAATTAAAGAGAGTTT  3677

Query 1717  --------------------------------------------------------------------------  1716
                                                                                      
Sbjct 3678  AGTCACACAGGGAGGTCTAGGTGAACTGATGTTGAAGTTTATTACTAGACTTTTCAGACCTAAAAATTTTATTT  3751

Query 1717  --------------------------------------------------------------------------  1716
                                                                                      
Sbjct 3752  ATTGTTATTACTTGAATATGTCAAAAGTATATTACTGGACAACCTTTTACACATTCCTCTTTCTAAAATCGAAT  3825

Query 1717  --------------------------------------------------------------------------  1716
                                                                                      
Sbjct 3826  TGGACAATTACAGTTCTCTGGTTCAGAAAATTACATTAGCTCAGAACCCAGTAACCCTTGATAACCCTGTTAGC  3899

Query 1717  --------------------------------------------------------------------------  1716
                                                                                      
Sbjct 3900  GCAGCAATTCCCGAGTGTGTGCTTTGTGCAGAGCGTTGGACTATGTACTGCTCTTGATGTGGGGACAGCGGGGA  3973

Query 1717  --------------------------------------------------------------------------  1716
                                                                                      
Sbjct 3974  CAGAGAGCTGTCATTGAAATAGACATCTGTTTAAGAAGCGATACTTAGATGAACCTCTGTATTTCTGAAAAATA  4047

Query 1717  -------------------------  1716
                                     
Sbjct 4048  AATGTGAAATATCTTAAGAGCTTAA  4072

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