Nucleotide Global Alignment

Description

Query:
TRCN0000477990
Subject:
XM_011544518.2
Aligned Length:
2447
Identities:
1055
Gaps:
1369

Alignment

Query    1  ATGAGCTGGTCACCTTCCCTGACAACGCAGACATGTGGGGCCTGGGAAATGAAAGAGCGCCTTGGGACAGGGGG  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGAGCTGGTCACCTTCCCTGACAACGCAGACATGTGGGGCCTGGGAAATGAAAGAGCGCCTTGGGACAGGGGG  74

Query   75  ATTTGGAAATGTCATCCGATGGCACAATCAGGAAACAGGTGAGCAGATTGCCATCAAGCAGTGCCGGCAGGAGC  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  ATTTGGAAATGTCATCCGATGGCACAATCAGGAAACAGGTGAGCAGATTGCCATCAAGCAGTGCCGGCAGGAGC  148

Query  149  TCAGCCCCCGGAACCGAGAGCGGTGGTGCCTGGAGATCCAGATCATGAGAAGGCTGACCCACCCCAATGTGGTG  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  TCAGCCCCCGGAACCGAGAGCGGTGGTGCCTGGAGATCCAGATCATGAGAAGGCTGACCCACCCCAATGTGGTG  222

Query  223  GCTGCCCGAGATGTCCCTGAGGGGATGCAGAACTTGGCGCCCAATGACCTGCCCCTGCTGGCCATGGAGTACTG  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GCTGCCCGAGATGTCCCTGAGGGGATGCAGAACTTGGCGCCCAATGACCTGCCCCTGCTGGCCATGGAGTACTG  296

Query  297  CCAAGGAGGAGATCTCCGGAAGTACCTGAACCAGTTTGAGAACTGCTGTGGTCTGCGGGAAGGTGCCATCCTCA  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  CCAAGGAGGAGATCTCCGGAAGTACCTGAACCAGTTTGAGAACTGCTGTGGTCTGCGGGAAGGTGCCATCCTCA  370

Query  371  CCTTGCTGAGTGACATTGCCTCTGCGCTTAGATACCTTCATGAAAACAGAATCATCCATCGGGATCTAAAGCCA  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  CCTTGCTGAGTGACATTGCCTCTGCGCTTAGATACCTTCATGAAAACAGAATCATCCATCGGGATCTAAAGCCA  444

Query  445  GAAAACATCGTCCTGCAGCAAGGAGAACAGAGGTTAATACACAAAATTATTGACCTAGGATATGCCAAGGAGCT  518
            ||||||||||||||||||||||||||||||||                         |||||||||||||||||
Sbjct  445  GAAAACATCGTCCTGCAGCAAGGAGAACAGAG-------------------------GGATATGCCAAGGAGCT  493

Query  519  GGATCAGGGCAGTCTTTGCACATCATTCGTGGGGACCCTGCAGTACCTGGCCCCAGAGCTACTGGAGCAGCAGA  592
            |||||||||||||||||||||||||||||||||||||||||||||||                           
Sbjct  494  GGATCAGGGCAGTCTTTGCACATCATTCGTGGGGACCCTGCAGTACC---------------------------  540

Query  593  AGTACACAGTGACCGTCGACTACTGGAGCTTCGGCACCCTGGCCTTTGAGTGCATCACGGGCTTCCGGCCCTTC  666
                                                                                      
Sbjct  541  --------------------------------------------------------------------------  540

Query  667  CTCCCCAACTGGCAGCCCGTGCAGTGGCATTCAAAAGTGCGGCAGAAGAGTGAGGTGGACATTGTTGTTAGCGA  740
                                    ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  541  ------------------------TGGCATTCAAAAGTGCGGCAGAAGAGTGAGGTGGACATTGTTGTTAGCGA  590

Query  741  AGACTTGAATGGAACGGTGAAGTTTTCAAGCTCTTTACCCTACCCCAATAATCTTAACAGTGTCCTGGCTGAGC  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  591  AGACTTGAATGGAACGGTGAAGTTTTCAAGCTCTTTACCCTACCCCAATAATCTTAACAGTGTCCTGGCTGAGC  664

Query  815  GACTGGAGAAGTGGCTGCAACTGATGCTGATGTGGCACCCCCGACAGAGGGGCACGGATCCCACGTATGGGCCC  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  665  GACTGGAGAAGTGGCTGCAACTGATGCTGATGTGGCACCCCCGACAGAGGGGCACGGATCCCACGTATGGGCCC  738

Query  889  AATGGCTGCTTCAAGGCCCTGGATGACATCTTAAACTTAAAGCTGGTTCATATCTTGAACATGGTCACGGGCAC  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  739  AATGGCTGCTTCAAGGCCCTGGATGACATCTTAAACTTAAAGCTGGTTCATATCTTGAACATGGTCACGGGCAC  812

Query  963  CATCCACACCTACCCTGTGACAGAGGATGAGAGTCTGCAGAGCTTGAAGGCCAGAATCCAACAGGACACGGGCA  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  813  CATCCACACCTACCCTGTGACAGAGGATGAGAGTCTGCAGAGCTTGAAGGCCAGAATCCAACAGGACACGGGCA  886

Query 1037  TCCCAGAGGAGGACCAGGAGCTGCTGCAGGAAGCGGGCCTGGCGTTGATCCCCGATAAGCCTGCCACTCAGTGT  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  887  TCCCAGAGGAGGACCAGGAGCTGCTGCAGGAAGCGGGCCTGGCGTTGATCCCCGATAAGCCTGCCACTCAGTGT  960

Query 1111  ATTTCAGACGGCAAG----GTGAGCCCTGGCTTCGTACACAC----------CATCCTGTTTACCTTGGCTGTG  1170
            |||||||||||||||    .||||    |||      |||||          .|||.|||||   ||..||.||
Sbjct  961  ATTTCAGACGGCAAGTTAAATGAG----GGC------CACACATTGGACATGGATCTTGTTT---TTCTCTTTG  1021

Query 1171  CCTCCTGGGAAACTCAAC----ACACTTTCAGATTT-----------CAATTCTGCTT-----TGTCA--TGTA  1222
            .|..| .|.|||.|||.|    |.||  ||||||.|           |||     |.|     |||||  ||||
Sbjct 1022  ACAAC-AGTAAAATCACCTATGAGAC--TCAGATCTCCCCACGGCCCCAA-----CCTGAAAGTGTCAGCTGTA  1087

Query 1223  GTCTGTTAATCACACAGTGC------GGATACCTGGCTGGTTTT------------------------------  1260
            ..||     |||   ||.||      ||| |.||.||  .||.|                              
Sbjct 1088  TCCT-----TCA---AGAGCCCAAGAGGA-ATCTCGC--CTTCTTCCAGCTGAGGAAGGTGTGGGGCCAGGTCT  1150

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1151  GGCACAGCATCCAGACCCTGAAGGAAGATTGCAACCGGCTGCAGCAGGGACAGCGAGCCGCCATGATGAATCTC  1224

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1225  CTCCGAAACAACAGCTGCCTCTCCAAAATGAAGAATTCCATGGCTTCCATGTCTCAGCAGCTCAAGGCCAAGTT  1298

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1299  GGATTTCTTCAAAACCAGCATCCAGATTGACCTGGAGAAGTACAGCGAGCAAACCGAGTTTGGGATCACATCAG  1372

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1373  ATAAACTGCTGCTGGCCTGGAGGGAAATGGAGCAGGCTGTGGAGCTCTGTGGGCGGGAGAACGAAGTGAAACTC  1446

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1447  CTGGTAGAACGGATGATGGCTCTGCAGACCGACATTGTGGACTTACAGAGGAGCCCCATGGGCCGGAAGCAGGG  1520

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1521  GGGAACGCTGGACGACCTAGAGGAGCAAGCAAGGGAGCTGTACAGGAGACTAAGGGAAAAACCTCGAGACCAGC  1594

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1595  GAACTGAGGGTGACAGTCAGGAAATGGTACGGCTGCTGCTTCAGGCAATTCAGAGCTTCGAGAAGAAAGTGCGA  1668

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1669  GTGATCTATACGCAGCTCAGTAAAACTGTGGTTTGCAAGCAGAAGGCGCTGGAACTGTTGCCCAAGGTGGAAGA  1742

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1743  GGTGGTGAGCTTAATGAATGAGGATGAGAAGACTGTTGTCCGGCTGCAGGAGAAGCGGCAGAAGGAGCTCTGGA  1816

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1817  ATCTCCTGAAGATTGCTTGTAGCAAGGTCCGTGGTCCTGTCAGTGGAAGCCCGGATAGCATGAATGCCTCTCGA  1890

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1891  CTTAGCCAGCCTGGGCAGCTGATGTCTCAGCCCTCCACGGCCTCCAACAGCTTACCTGAGCCAGCCAAGAAGAG  1964

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1965  TGAAGAACTGGTGGCTGAAGCACATAACCTCTGCACCCTGCTAGAAAATGCCATACAGGACACTGTGAGGGAAC  2038

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2039  AAGACCAGAGTTTCACGGTAACAGCTTGTGTGAGACTCCTGCGATTCCATGTCCTTTCTTTCTATGGCAAAATA  2112

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2113  GAAGAGAAAATGGAAATGCAATCTGGCATTATCCTCAACCTCAGTGTTTGTTTGTTTGCTTGTTTATTTGTGAC  2186

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2187  AGGGTCTCTCTCTCTCACCCAGGCTGGAGTGCAGTGGCATGATCTTGGCTCACTGCAACCTCCGCTTCCCGGGT  2260

Query 1261  -----  1260
                 
Sbjct 2261  TCAAG  2265

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