Nucleotide Global Alignment

Description

Query:
TRCN0000479002
Subject:
XR_879743.2
Aligned Length:
4426
Identities:
1282
Gaps:
3073

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GAGCCAGTCTGGGGCCTAGGCGCAGACGCATTGAGCTTAAGCAGCCGGTGATGGCGGCAGCAGCCGTGGAGTCT  74

Query    1  -----------------ATGAGGCGACGAAGGAGGCGGGACGGCTTTTACCCAGCCCCGGACTTCCGAGACAGG  57
                             ||||||||||||.|||||||||||||||||||||.|||.||.|||||||||.|||||
Sbjct   75  GCGGCGGGTCCGGGCCCATGAGGCGACGACGGAGGCGGGACGGCTTTTACCTAGCGCCTGACTTCCGACACAGG  148

Query   58  GAAGCTGAGGACATGGCAGGAGTGTTTGACATAGACCTGGACCAGCCAGAGGACGCGGGCTCTGAGGATGAGCT  131
            ||||||||||||||||||||||||||||||||||||||||||||||||||.||.||.|||||||||||||||||
Sbjct  149  GAAGCTGAGGACATGGCAGGAGTGTTTGACATAGACCTGGACCAGCCAGAAGATGCAGGCTCTGAGGATGAGCT  222

Query  132  GGAGGAGGGGGGTCAGTTAAATGAAAGCATGGACCATGGGGGAGTTGGACCATATGAACTTGGCATGGAACATT  205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GGAGGAGGGGGGTCAGTTAAATGAAAGCATGGACCATGGGGGAGTTGGACCATATGAACTTGGCATGGAACATT  296

Query  206  GTGAGAAATTTGAAATCTCAGAAACTAGTGTGAACAGAGGGCCAGAAAAAATCAGACCAGAATGTTTTGAGCTA  279
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GTGAGAAATTTGAAATCTCAGAAACTAGTGTGAACAGAGGGCCAGAAAAAATCAGACCAGAATGTTTTGAGCTA  370

Query  280  CTTCGGGTACTTGGTAAAGGGGGCTATGGAAAGGTTTTTCAAGTACGAAAAGTAACAGGAGCAAATACTGGGAA  353
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  CTTCGGGTACTTGGTAAAGGGGGCTATGGAAAGGTTTTTCAAGTACGAAAAGTAACAGGAGCAAATACTGGGAA  444

Query  354  AATATTTGCCATGAAGGTGCTTAAAAAGGCAATGATAGTAAGAAATGCTAAAGATACAGCTCATACAAAAGCAG  427
            .||||||||||||||||||||||||||||||||||||||.||.||||||||.||.||.||.||.||.|||||||
Sbjct  445  GATATTTGCCATGAAGGTGCTTAAAAAGGCAATGATAGTGAGGAATGCTAAGGACACGGCCCACACGAAAGCAG  518

Query  428  AACGGAATATTCTGGAGGAAGTAAAGCATCCCTTCATCGTGGATTTAATTTATGCCTTTCAGACTGGTGGAAAA  501
            |.|||||.||||||||||||||.||.||.||.|||||.|||||..|.|||||||||||||||||.||.|||||.
Sbjct  519  AGCGGAACATTCTGGAGGAAGTGAAACACCCTTTCATTGTGGACCTGATTTATGCCTTTCAGACCGGAGGAAAG  592

Query  502  CTCTACCTCATCCTTGAGTATCTCAGTGGAGGAGAACTATTTATGCAGTTAGAAAGAGAGGGAATATTTATGGA  575
            ||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||
Sbjct  593  CTCTACCTCATCCTCGAGTATCTCAGTGGAGGAGAACTATTTATGCAGTTAGAAAGAGAGGGAATATTCATGGA  666

Query  576  AGACACTGCCTGCTTTTACTTGGCAGAAATCTCCATGGCTTTGGGGCATTTACATCAAAAGGGGATCATCTACA  649
            ||||||.||.||||||||||||||.|||||||||||||||||||||||||||||||||||.|||||||||||||
Sbjct  667  AGACACAGCGTGCTTTTACTTGGCTGAAATCTCCATGGCTTTGGGGCATTTACATCAAAAAGGGATCATCTACA  740

Query  650  GAGACCTGAAGCCGGAGAATATCATGCTTAATCACCAAGGTCATGTGAAACTAACAGACTTTGGACTATGCAAA  723
            |||||||||||||||||||.|||||||||||||||||||||||.||||||||||||||||||||||||||||||
Sbjct  741  GAGACCTGAAGCCGGAGAACATCATGCTTAATCACCAAGGTCACGTGAAACTAACAGACTTTGGACTATGCAAA  814

Query  724  GAATCTATTCATGATGGAACAGTCACACACACATTTTGTGGAACAATAGAATACATGGCCCCTGAAATCTTGAT  797
            ||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||.||
Sbjct  815  GAATCTATTCATGATGGAACAGTCACGCACACATTTTGTGGAACAATAGAATACATGGCCCCTGAAATCTTAAT  888

Query  798  GAGAAGTGGCCACAATCGTGCTGTGGATTGGTGGAGTTTGGGAGCATTAATGTATGACATGCTGACTGGAGCA-  870
            ||||||.||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  889  GAGAAGCGGCCACAACCGTGCTGTGGATTGGTGGAGTTTGGGAGCATTAATGTATGACATGCTGACTGGAGCAG  962

Query  871  ---CCCCCATTCACTGGGGAGAATAGAAAGAAAACAATTGACAAAATCCTCAAATGTAAACTCAATTTGCCTCC  941
               ||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||
Sbjct  963  TAGCCTCCATTCACTGGGGAGAATAGAAAGAAAACAATTGACAAAATCCTCAAATGTAAACTTAATTTGCCTCC  1036

Query  942  CTACCTCACACAAGAAGCCAGAGATCTGCTTAAAAAGCTGCTGAAAAGAAATGCTGCTTCTCGTCTGGGAGCTG  1015
            ||||||||||||||||||..||||||||||||||||||||||||||||||||||||||||||||||.|||||||
Sbjct 1037  CTACCTCACACAAGAAGCTCGAGATCTGCTTAAAAAGCTGCTGAAAAGAAATGCTGCTTCTCGTCTTGGAGCTG  1110

Query 1016  GTCCTGGGGACGCTGGAGAAGTTCAAGCTCATCCATTCTTTAGACACATTAACTGGGAAGAACTTCTGGCTCGA  1089
            |.||||||||.|||||||||||.|||||||||||.||.||.||||||||||||||||||||||||||||||||.
Sbjct 1111  GCCCTGGGGATGCTGGAGAAGTCCAAGCTCATCCTTTTTTCAGACACATTAACTGGGAAGAACTTCTGGCTCGG  1184

Query 1090  AAGGTGGAGCCCCCCTTTAAACCTCTGTTGCAATCTGAAGAGGATGTAAGTCAGTTTGATTCCAAGTTTACACG  1163
            ||||||||.||.||||||||.||||||||||||||||||||||||||.||||||||||||||.|||||||||||
Sbjct 1185  AAGGTGGAACCTCCCTTTAAGCCTCTGTTGCAATCTGAAGAGGATGTGAGTCAGTTTGATTCAAAGTTTACACG  1258

Query 1164  TCAGACACCTGTCGACAGCCCAGATGACTCAACTCTCAGTGAAAGTGCCAATCAGGTCTTTCTGGGTTTTACAT  1237
            ||||||||||||.||||||||.||||||||.||||||||||||||||||||.||||||||||||||||||||||
Sbjct 1259  TCAGACACCTGTTGACAGCCCTGATGACTCCACTCTCAGTGAAAGTGCCAACCAGGTCTTTCTGGGTTTTACAT  1332

Query 1238  ATGTGGCTCCATCTGTACTTGAAAGTGTGAAAGAAAAGTTTTCCTTTGAACCAAAAATCCGATCACCTCGAAGA  1311
            |||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||.|||.|||||
Sbjct 1333  ATGTGGCTCCATCTGTACTTGAAAGTGTGAAAGAAAAGTTTTCATTTGAACCAAAAATCCGATCTCCTAGAAGA  1406

Query 1312  TTTATTGGCAGCCCACGAACACCTGTCAG---------------TACTG--------------CTATGTGC---  1353
            ||||||||.||.|||||||||||||||||               |.|||              |.|.||||   
Sbjct 1407  TTTATTGGTAGTCCACGAACACCTGTCAGCCCAGTCAAATTCTCTCCTGGGGATTTCTGGGGACGAGGTGCTTC  1480

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 1481  AGCCAGCACGGCAAATCCTCAGACCCCTGTGGAATACCCAATGGAAACAAGTGGGATAGAGCAGATGGATGTGA  1554

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 1555  CAGTGAGCGGGGAAGCATCAGCGCCACTTCCAATCCGACAACCCAACTCCGGGCCGTACAAAAAACAAGCTTTT  1628

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 1629  CCTATGATCTCCAAACGGCCAGAGCACCTGCGGATGAATCTATGATGAAACAATGCTTTTATTAATGCAAAATC  1702

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 1703  AAAAAGGAAACAAATCCGGGAAGGGGATGTGTGAGCATCCTGCAATATAAAAACAAGAATAAAATGGCAGTCTC  1776

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 1777  AAAGAGTCAGTGTCATTACCTGGAATGCTTTCGATGGAGGAAAAAATAAACATGGATTTTAAAAAATCAATCAA  1850

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 1851  AAATGGTGCAAAAAAAAAAATAAACCCACAAAAAACTCAAGCAAAATAGTATTGTGGAATCCACAGACACATCA  1924

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 1925  GCTGACTGGTTCCTATCCTAGCAACATCTCGGCGTTCGCAAGGGTTCTCATGCTGATGGCTGCAAACTGACAGT  1998

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 1999  ATTAAGGGTAGGATGTTGCTTCGGAATCACCGTTGAAATCTGATGATGTCAAATAAGGGTTATCCTAATAGGCA  2072

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 2073  AAGTTTGAGATTGCCTGTAATACTTGCAACTAAGGACAAATTAGCATGCAAGCTTTGTCAAACTTTTTCCAGCA  2146

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 2147  ACACAGAATCAAAGACAAAAGAAACTTTATCGATTGATGTTTTACGTGCAAACAACCTGAATCTTTTTTTTATA  2220

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 2221  TAAATATATATTTTTCAAATAGATTTTTGATTCAGCTCATTATGAAAAACATCCCAAACTTTAAAATGCGAAGT  2294

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 2295  TATTGGTTGGTGTGAAGAAAGCCAGCTTCTGTCTTCTCTTGATGAAATAAAATGCAAATGATCATTGTTAACCA  2368

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 2369  CAGCTGTGGCTTGTCTGAGGGCCTGGGGTGGACCTGGGGTGTTTTTTTAATCTTTTTGTTTTAGTAACCTAGCT  2442

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 2443  GCAATACTTGTCTGTAATACTAGGGGGGAAAAGTCTGTTTAATCATTTTTACTTGCAGTACTGCTGTGTGTTTG  2516

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 2517  GCGTAACTGCAAGCCTTGGGACAGGCAGAAGTTGTATGATCTACATTGCATCCTTGTCCTGGGCCTGCACTACA  2590

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 2591  CTGGAAACAGTATCACCACCTGTTCTTATACCAGTATTTGAGTCAAGCCTTGGTCGAGGAGGGACAGAAGAGAA  2664

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 2665  TCAGGCTAAAGTGCATAAAGAGGGCAGTAAGCGGGGGAGATAGACCTGCAGGGGAGAGGGTGTTGCCACGGGCG  2738

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 2739  TCTCTCTCGACTCTTTACAGCACATTGGTGTGGTTCTAGGTTTACTTTGTACTGTTATGCTGTTTACCTTCCTT  2812

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 2813  AACAATTTTCTTTTTTGAGAATCTAAAAAAGAAAAAAATGGTGTTTTTTTCCCCTCCTGCACTGGGGCTACATT  2886

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 2887  TTTCACTTATAAAAATATTTGATGGCCTTTTGATGAATGTCTTCCATAACGAATAAGAAAACCTAGTGGCTTAA  2960

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 2961  TTTAGGAAACATGTTAACAAGACACTGTTTTTGAAATTGTAACAAAGTCAACATAAGTGATTTACAGGTACAAA  3034

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 3035  GAATAAAAATAAAGGTAACTTTACCTTTCTTAAATACTTCCTGCCTTAAGGAGCATTTCCATGACTAGCTGGTG  3108

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 3109  AAAGGGTTTAATATCTGCAGAGCTTTATAAAATATACTGCAGTGCATACTGGTCTAGGTAGATGGTCACACAGT  3182

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 3183  GAGTCCTGTCACGCCACTCTGTTGGTCTTTTTTGTCTTGGTAATAGTTGCAGCCCTTGGGTTTCTTTATGCAGA  3256

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 3257  TGCTCTTGCTGTGTTCCTCAAAGGATCCAAGCCATAAAATTCTTTATGCATGTCACAGTCAGGATTGACCCAGA  3330

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 3331  CCTTGCTTATTCAAATTGTAATTGAAGTGAGATGGGAAGAAATGTTAACAGTGAGCAAAAATAGAACCTTGAGA  3404

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 3405  GGCTGGAGAGATGACTCAGCAGTTAAGAACTCTGGCTACTTTTCCAGAGGTCCTGAGTTCAATCCCAGCACCCA  3478

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 3479  CATGATAGCTTACATCTATAAACTGTAGTCTCGTTGGATCAAATGTTCTCTTACATGCACATGTGCAGACAAAA  3552

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 3553  CATCCACATACATAAAAATCTTAAAAAAAAAAAACAAAAAAAAAAAACCAGAGCCATGGCAGATGACTGGAAAT  3626

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 3627  ACTGCCCTTCAATTGTGGCAGCAAACGTCCATCTGGACAGAGAATTTCTTTTTTTATCATTTAAATGGTCATTC  3700

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 3701  CTGATTCTCTTGACTGTAGCAGCATTTTGAGAACTTCATAATTGTAGCAGTAAATTAGGAGCTGCAGTAATGAT  3774

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 3775  TAAGAATGTTCTTCATTCTTTGAGAGTTTGTGGTATCTTAAAAAATAGAACCCCTCAAAAAACCTATGGCAATG  3848

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 3849  CATTATAGGAATCATTTCAGACTGCAAATGGCTTGTGCTACTCTGATATCTGTTTCTAAATGTGTTTACTAACT  3922

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 3923  ATAGCGTTGACTGCCTGGCCAAATTCCAATAAAACTTTTACACTAAATGATTCCTCCTTAGCCCTAGTTGCTAG  3996

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 3997  TAATATGTGCACTGTGACCACCCCATAAACTGTTAATAAACTGTTCATAGAATTACTGCCAGCAATAGTGGCAA  4070

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 4071  ATATCGCAACGTTTTTGTGTAGAACGCATTAATTGTACACCTTCTGTCGACTTCCATCTACACAAATATATAGC  4144

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 4145  TTTTCTATCACAACATTAAGTGAAATTGATGCTGTGGCAAGTTTATTGAGAAACTTTCATAAATGGATATCCCT  4218

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 4219  ACTATGACTGTGAAAACATGTCAGGTGTCACATGAGTGTCACAGACAGAAAGCACATGCCTATGCAATATGGCC  4292

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 4293  TACTCTGTATTTATTTGTAAAAACTGAAGCATAATTTAAAGTGTATATCAATACTACTCTGAGTTTCTAAGAGA  4366

Query 1354  ------------------------------------------------------------  1353
                                                                        
Sbjct 4367  GGTGTTCATGCTTGTACCAGGTAAGTGAATAAAAAAAAAGATTAAGTGCTTTTTCTTTCA  4426

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