Nucleotide Global Alignment

Description

Query:
TRCN0000480119
Subject:
XR_429214.4
Aligned Length:
1905
Identities:
1192
Gaps:
713

Alignment

Query    1  ------------------------------------------ATGGCGGCGGCTGCGGGTAGCTGCGCGCGGGT  32
                                                      ||||||||||||||||||||||||||||||||
Sbjct    1  GGCGCCGGGAGAGAAGCGCCGCCTAGCTGCGCTTCCGCAAAGATGGCGGCGGCTGCGGGTAGCTGCGCGCGGGT  74

Query   33  GGCGGCCTGGGGCGGAAAACTGCGACGGGGGCTCGCTGTCAGCCGACAGGCTGTGCGGAGTCCCGGCCCCTTGG  106
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  GGCGGCCTGGGGCGGAAAACTGCGACGGGGGCTCGCTGTCAGCCGACAGGCTGTGCGGAGTCCCGGCCCCTTGG  148

Query  107  CAGCGGCAGTGGCCGGCGCGGCCCTGGCAGGAGCAGGAGCGGCCTGGCACCACAGCCGCGTCAGTGTTGCGGCG  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  CAGCGGCAGTGGCCGGCGCGGCCCTGGCAGGAGCAGGAGCGGCCTGGCACCACAGCCGCGTCAGTGTTGCGGCG  222

Query  181  CGGGATGGCAGTTTTACAGTCTCCGCACAGAAAAATGTTGAACATGGAATAATATATATTGGGAAACCGTCTCT  254
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  CGGGATGGCAGTTTTACAGTCTCCGCACAGAAAAATGTTGAACATGGAATAATATATATTGGGAAACCGTCTCT  296

Query  255  TCGTAAGCAGCGCTTCATGCAGTTTTCTTCACTCGAACATGAAGGAGAATATTATATGACACCACGAGACTTCC  328
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  TCGTAAGCAGCGCTTCATGCAGTTTTCTTCACTCGAACATGAAGGAGAATATTATATGACACCACGAGACTTCC  370

Query  329  TCTTCTCAGTGATGTTTGAGCAAATGGAACGTAAAACTTCAGTCAAGAAGCTGACAAAAAAGGACATCGAGGAT  402
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  TCTTCTCAGTGATGTTTGAGCAAATGGAACGTAAAACTTCAGTCAAGAAGCTGACAAAAAAGGACATCGAGGAT  444

Query  403  ACACTGTCAGGGATCCAAACAGCTGGCTGTGGATCAACTTTTTTCAGAGACCTTGGCGATAAAGGGCTAATTTC  476
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  ACACTGTCAGGGATCCAAACAGCTGGCTGTGGATCAACTTTTTTCAGAGACCTTGGCGATAAAGGGCTAATTTC  518

Query  477  ATATACCGAGTATCTTTTCTTGCTTACAATCCTCACTAAACCCCATTCTGGATTTCATGTTGCTTTTAAAATGC  550
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  ATATACCGAGTATCTTTTCTTGCTTACAATCCTCACTAAACCCCATTCTGGATTTCATGTTGCTTTTAAAATGC  592

Query  551  TGGATACAGATGGTAATGAGATGATTGAAAAAAGGGAATTTTTTAAGCTGCAGAAGATCATAAGTAAACAAGAT  624
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  TGGATACAGATGGTAATGAGATGATTGAAAAAAGGGAATTTTTTAAGCTGCAGAAGATCATAAGTAAACAAGAT  666

Query  625  GACTTGATGACAGTGAAAACTAATGAAACTGGATATCAGGAAGCAATAGTGAAAGAACCTGAAATTAACACAAC  698
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GACTTGATGACAGTGAAAACTAATGAAACTGGATATCAGGAAGCAATAGTGAAAGAACCTGAAATTAACACAAC  740

Query  699  TCTTCAGATGCGTTTCTTTGGAAAAAGAGGACAAAGAAAACTTCATTATAAAGAATTTCGAAGATTTATGGAAA  772
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  TCTTCAGATGCGTTTCTTTGGAAAAAGAGGACAAAGAAAACTTCATTATAAAGAATTTCGAAGATTTATGGAAA  814

Query  773  ATTTACAAACAGAGATTCAAGAAATGGAATTCCTTCAGTTTTCTAAAGGTTTGAGTTTCATGAGAAAAGAAGAC  846
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  ATTTACAAACAGAGATTCAAGAAATGGAATTCCTTCAGTTTTCTAAAGGTTTGAGTTTCATGAGAAAAGAAGAC  888

Query  847  TTTGCAGAGTGGCTACTTTTTTTCACTAACACTGAAAATAAAGATATTTATTGGAAAAATGTGAGAGAGAAGTT  920
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  TTTGCAGAGTGGCTACTTTTTTTCACTAACACTGAAAATAAAGATATTTATTGGAAAAATGTGAGAGAGAAGTT  962

Query  921  GTCAGCAGGAGAGAGCATTAGTTTGGATGAATTCAAGTCATTTTGCCATTTTACAACCCACTTGGAAGACTTTG  994
            |||||||||||                                                               
Sbjct  963  GTCAGCAGGAG---------------------------------------------------------------  973

Query  995  CTATTGCCATGCAGATGTTCAGTTTAGCTCATCGTCCTGTCAGACTAGCGGAGTTTAAGAGAGCTGTGAAAGTA  1068
                                                          ||||||||||||||||||||||||||||
Sbjct  974  ----------------------------------------------AGCGGAGTTTAAGAGAGCTGTGAAAGTA  1001

Query 1069  GCAACAGGACAAGAACTCTCAAACAATATTTTGGACACTGTCTTTAAGATCTTTGATTTGGATGGTGATGAATG  1142
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002  GCAACAGGACAAGAACTCTCAAACAATATTTTGGACACTGTCTTTAAGATCTTTGATTTGGATGGTGATGAATG  1075

Query 1143  TCTTAGTCATGAAGAGTTTCTTGGGGTGTTAAAAAACAGAATGCATCGAGGTTTATGGGTACCACAACATCAGA  1216
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076  TCTTAGTCATGAAGAGTTTCTTGGGGTGTTAAAAAACAGAATGCATCGAGGTTTATGGGTACCACAACATCAGA  1149

Query 1217  GTATACAAGAATACTGGAAGTGTGTGAAGAAAGAAAGCATTAAAGGAGTAAAAGAAGTCTGGAAACAAGCTGG-  1289
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct 1150  GTATACAAGAATACTGGAAGTGTGTGAAGAAAGAAAGCATTAAAGGAGTAAAAGAAGTCTGGAAACAAGCTGGA  1223

Query 1290  AAAGGTCTTTTT--------------------------------------------------------------  1301
            ||||||||||||                                                              
Sbjct 1224  AAAGGTCTTTTTTAATAAAAGATATAATAGTATGGCAATTATATTGTTCCAAATGTCAAAATTTGTGATTTTTT  1297

Query 1302  --------------------------------------------------------------------------  1301
                                                                                      
Sbjct 1298  AGAAGTACTTGCTATTTATCTTCTTAAGTCTTCATTGATATTCTGTGTGAAATAAGCATGTCTTGTACTTGCTT  1371

Query 1302  --------------------------------------------------------------------------  1301
                                                                                      
Sbjct 1372  TCTGATTCATAATTTTATTAAAGAACTTAGTAGAAAGAAAAGTAAGTATAAAAATAGATATTGGATTCTGTCAG  1445

Query 1302  --------------------------------------------------------------------------  1301
                                                                                      
Sbjct 1446  AAGGCCTAGATTTGAAATAATGTTTTGTACTTCGGTAAGATGGAAAACTTAGTGATTCACTGATTTCTTAGACA  1519

Query 1302  --------------------------------------------------------------------------  1301
                                                                                      
Sbjct 1520  CTCTAATATGATATGCTTTCTGGAAGGATAAAACAAATACATATGGGAAAAAGTACTTGAGACCAAGGCCAGCA  1593

Query 1302  --------------------------------------------------------------------------  1301
                                                                                      
Sbjct 1594  TCAATTCCAGACATCTTCATGTTCCTAATAGGCTAAATGAAGTTAAAAACTTATTTCAGATTTTTCTCATCTGT  1667

Query 1302  --------------------------------------------------------------------------  1301
                                                                                      
Sbjct 1668  ACCTTATATCTCATAAATTTATTGCATATTTTATGTCAGTAGCTTAGCTGTTTATTGTCTTTAAAATAACATGT  1741

Query 1302  -------------------------------------------------------  1301
                                                                   
Sbjct 1742  AAACTTCAATGTTCTATCTGGAAGCAGAATAAAATATTTACATAGATACAAAAAA  1796

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.