Nucleotide Global Alignment
Description
- Query:
- TRCN0000480705
- Subject:
- XR_001783685.1
- Aligned Length:
- 5022
- Identities:
- 1163
- Gaps:
- 3789
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AAGGCTATGGGGAGAAATACGAAATTGAAAAGTCACTATGGAGACCACCTCCGGGCAAGATGAAGGAGGAACAC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGGAAGTGGAGCGCCTGAACACACGGCGAGACTCTGAAAGCTATTAACATTGTTTGGGCGGTTAGGGCGGTTGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CGGCAACTCGCCGGAGGGCGGCAGTTGCGTGGCACCCCGAAGCGTGCCTAGGCGCACGCTCCCCTCCGCTCCTC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CACTCAGAGAGCAAAGTGGGGGCGGAGGGGGAGGGGGAAGAACGCGAAGGGCGGTGGAACTACAACTCCCGCAA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GGCCTTGCGCGTCCAGGGTGCTTTACAATAGAAGCTCGGTTGGCGAGGTCTGCGGAGAGGTGTCGGAACTGCCG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TTTCCGGCATGTTCAGGTCTACGAGAACGACCGATCAGTGGAGGGTGGGGGAGAGACTCCAATGCCCAGCGGGC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CATGCGCGGGCAGCGCTTGCGCGAACCGCGGACGGGGGGGCGGTCGGGCCATTTAAATGTGTGTTTGTGGGTGA 518
Query 1 -ATGGCTGCGCAGGTCGGAGCGGTGCGCGTAGTACGGGCGGTGGCGGCGCAGGAGGAGCCGGACAAAGAGGGGA 73
|||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||.||||
Sbjct 519 AATGGCTGCGCAGGTCGGAGCGGTTCGCGTAGTACGGGCGGTGGCGGCGCAGGAGGAGCCGGACAAAGAAGGGA 592
Query 74 AGGAGAAACCTCATGCTGGGGTCTCCCCGCGGGGAGTTAAACGGCAGCGCCGATCTAGCAGTGGGGGGTCTCAG 147
||||||||||.||||.||||||.||.|||||||||||.||.|||||||||||..|.|||||.|||||.||||||
Sbjct 593 AGGAGAAACCCCATGTTGGGGTTTCGCCGCGGGGAGTGAAGCGGCAGCGCCGGGCGAGCAGCGGGGGTTCTCAG 666
Query 148 GAGAAGCGGGGGCGGCCGAGCCAGGAGCCCCCTCTCGCTCCCCCTCACCGGCGGCGTCGCAGCCGCCAACATCC 221
||||||||||||||||||||||||||.||||||||||||||||||||.|||||||||||.||||||||||||||
Sbjct 667 GAGAAGCGGGGGCGGCCGAGCCAGGACCCCCCTCTCGCTCCCCCTCATCGGCGGCGTCGTAGCCGCCAACATCC 740
Query 222 TGGGCCGCTGCCGCCAACGAATGCAGCCCCAACTGTCCCAGGCCCTGTTGAGCCTCTTCTCCTGCCGCCTCCGC 295
.|||||||||||.|||||||||||.||||||||.|||||.|||||||||||.|||||.||||||||||||||||
Sbjct 741 CGGGCCGCTGCCTCCAACGAATGCCGCCCCAACCGTCCCGGGCCCTGTTGAACCTCTGCTCCTGCCGCCTCCGC 814
Query 296 CGCCACCTTCGCTGGCACCCGCCGGGCCCGCTGTCGCTGCCCCTCTCCCGGCCCCAAGCACCTCGGCCCTCTTC 369
|||||||.|||||||||||||||||||||.|||||||||||||.|||||||||||..|||||||||||||||||
Sbjct 815 CGCCACCGTCGCTGGCACCCGCCGGGCCCACTGTCGCTGCCCCGCTCCCGGCCCCGGGCACCTCGGCCCTCTTC 888
Query 370 ACCTTCTCGCCTCTGACGGTGAGCGCGGCCGGGCCCAAGCATAAGGGCCACAAGGAGCGGCACAAGCACCATCA 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 ACCTTCTCGCCTCTGACGGTGAGCGCGGCCGGGCCCAAGCATAAGGGCCACAAGGAGCGGCACAAGCACCATCA 962
Query 444 CCACCGCGGCCCCGATGGTGATCCCAGCTCCTGCGGAAC---CGATCTCAAGCACAAGGACAAGCAGGAAAACG 514
||||||||||.||||||||||.|||.||.||||||...| ||||||||||||||||||||||||||||||||
Sbjct 963 CCACCGCGGCTCCGATGGTGACCCCGGCGCCTGCGTTCCGGGCGATCTCAAGCACAAGGACAAGCAGGAAAACG 1036
Query 515 GCGAGAGGACTGGAGGGGTGCCTCTGATCAAAGCCCCCAAGAGAGAAACACCAGATGAAAATGGTAAAACCCAG 588
||||.||||..||||||||||||||||||||.||||||||||||||||||.|||||||||||||||||||||||
Sbjct 1037 GCGAAAGGAGCGGAGGGGTGCCTCTGATCAAGGCCCCCAAGAGAGAAACAGCAGATGAAAATGGTAAAACCCAG 1110
Query 589 AGAGCCGATGATTTTGTCTTGAAGAAAATAAAGAAGAAAAAGAAAAAGAAACACCGAGAAGACATGCGAGGAAG 662
|||||.|||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||.|||||||
Sbjct 1111 AGAGCTGATGATTTTGTCTTGAAGAAAATAAAGAAGAAAAAGAAAAAGAAACATCGAGAAGACATGAGAGGAAG 1184
Query 663 ACGCCTTAAAATGTACAATAAGGAAGTACAAACCGTCTGTGCTGGCCTGACCCGCATCAGTAAAGAAATTCTCA 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||
Sbjct 1185 ACGCCTTAAAATGTACAATAAGGAAGTACAAACCGTCTGTGCTGGCCTGACCCGCATCAGCAAAGAAATTCTCA 1258
Query 737 CCCAAGGACAAATAAATAGCACTTCAGGACTTAATAAGGAGTCCTTCAGGTATCTGAAAGATGAACAGCTGTGC 810
||||||||||..|||||||||||||||||.|||||||||||||||||||||||.||||.|||||||||||||||
Sbjct 1259 CCCAAGGACAGCTAAATAGCACTTCAGGAGTTAATAAGGAGTCCTTCAGGTATTTGAAGGATGAACAGCTGTGC 1332
Query 811 CGATTAAATTTGGGTATGCAAGAATATCGGGTACCCCAGGGAGTACAAACACCTTTTATGACTCACCAGGAACA 884
.|||||||||||||.|||||||||||||||||.||||||||||||||.||||||||||..||.|||||.|||||
Sbjct 1333 AGATTAAATTTGGGCATGCAAGAATATCGGGTGCCCCAGGGAGTACAGACACCTTTTACAACGCACCAAGAACA 1406
Query 885 TTCTATTCGTAGAAATTTCTTAAAAACAGGTACTAAATTTAGCAACTTTATTCATGAGGAACACCAGTCCAATG 958
|||||||||.||||||||||||||||||||||||||||||||||||||||||||.||.||||||||||||||||
Sbjct 1407 TTCTATTCGCAGAAATTTCTTAAAAACAGGTACTAAATTTAGCAACTTTATTCACGAAGAACACCAGTCCAATG 1480
Query 959 GTGGTGCTCTTGTCCTTCATGCTTACATGGATGAACTCTCATTTTTGTCTCCAATGGAGATGGAGAGATTTTCT 1032
|.||||||||||||||||||||.||||||||.||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 GGGGTGCTCTTGTCCTTCATGCATACATGGACGAACTCTCATTTTTGTCTCCAATGGAGATGGAGAGATTTTCT 1554
Query 1033 GAGGAGTTTCTTGCTTTGACATTCAGTGAAAATGAGAAAAATGCTGCTTACTATGCTTTAGCAATAGTGCATGG 1106
|||||||||||||||||||||||||||||||||||||||||.|||||.||||||||.|||||||||||||||||
Sbjct 1555 GAGGAGTTTCTTGCTTTGACATTCAGTGAAAATGAGAAAAACGCTGCGTACTATGCGTTAGCAATAGTGCATGG 1628
Query 1107 AGCGGCTGCTTATCTCCCAGACTTCTTGGACTACTTTGCTTTTAATTTCCCCAACACTCCAGTGAAAATGGAAA 1180
||||||.|||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||
Sbjct 1629 AGCGGCCGCTTATCTCCCAGACTTCTTGGACTACTTTGCTTTTAATTTTCCCAACACTCCAGTGAAAATGGAAA 1702
Query 1181 TTCTGGGCAAGAAAGATATTGAAACAACCACCATTTCAAATTTTCACACTCAG--------------------- 1233
||.|||||||||||||||||||||||||||||||||||||||||||.||||||
Sbjct 1703 TTTTGGGCAAGAAAGATATTGAAACAACCACCATTTCAAATTTTCATACTCAGTCTATCCCAGAAATGCATCCC 1776
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 1777 ATTGGTGTGATTTGTGACTGGAGAGACCGCCATTGCCTCTGCTCCTTCTGCCTGTGCACTGTTGTAGTAGAGAG 1850
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 1851 AGCAGGAGCAGCTAATCTGGAGAGGTCGCAAGATGAGTCTGCCCAAGATGTTGGAACTCCATGTGCAATAAAGG 1924
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 1925 GCTTCGTCTTGGATTTTGGCCTTGTTACTGCAATCAGGTCAACAGGACATATTGCTGTGGTACCTACCGAGCAG 1998
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 1999 GTCCTATGCGGCAGATAAGTCTTGTTGGAGCAGTAGATGAAGAAGTTGGTGATTATTTCCCAGAGTTCCTAGAT 2072
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 2073 ATGCTAGAAGAATCACCATTTCTGAAAATGACTTTGCCCTGGGGTACACTTTCCAGCCTCCAGCTACAATGTAG 2146
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 2147 GTCTCAGAGCGATGACGGGCCTATAATGTGGGTGAGGCCAGGAGAACAGATGATCCCTACAGCAGATATGCCAA 2220
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 2221 AGTCACCCTTCAAAAGACGACGATCAATGAATGAAATTAAAAATCTCCAGTACCTACCTCGGACAAGTGAACCC 2294
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 2295 CGAGAAGTCCTCTTTGAAGACAGGACCAGAGCTCATGCTGATCATGTAGGTCAGGGGTTTGACTGGCAAAGTAC 2368
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 2369 GGCTGCTGTTGGGGTTTTGAAGGCTGTACAATTCGGTGAATGGAGTGATCAGCCTCGCATAACCAAAGATGTGA 2442
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 2443 TTTGTTTTCATGCTGAGGATTTTACTGATGTTGTACAGAGACTTCAGTTAGACCTTCATGAACCTCCAGTTTCT 2516
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 2517 CAGTGTGTACAGTGGGTGGATGAAGCAAAACTAAACCAAATGAGGCGAGAAGGCATTCGCTATGCTAGAATTCA 2590
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 2591 GCTTTGCGACAATGATATCTACTTCATCCCTAGAAATGTCATTCATCAGTTCAAAACAGTGTCAGCAGTATGCA 2664
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 2665 GCCTAGCCTGGCATATAAGGCTTAAACAATACCACCCTGTTGTGGAAACCGCTCAAAACACAGAGAGCAATTCC 2738
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 2739 AACATGGATTGTGGTTTAGAAGTTGACTCCCAGTGTGTGAGAATAAAAACTGAATCTGAGGAAAGATGCACAGA 2812
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 2813 GATGCAGCTTTTGACAACTGCTTCACCGTCTTTCCCACCTCCATCAGAACTTCATCTACAGGATCTGAAGACTC 2886
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 2887 AGCCTCTTCCAGTTTTCAAGGTGGAGAGCAGACTGGACTCTGACCAGCAACACAGTCTGCAGGCACATCCAAGC 2960
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 2961 ACTCCTGTGTGACATATCCGATTTCCCCACCTCCCACTTGCCATCCAGCAGATGCCATCCTGTCATCTAAGCTG 3034
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 3035 GTCATTACTAATACACAAGGAGACTGTCTCCTGACAGCCAGCACTGTGCAATCACTCAGGAACCAGCGGATCTG 3108
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 3109 CAAAGACCTACAATCAAACGCAAATCTCCATTTTCCTTTTACAAAGCATTCTACCCTCACTTCCAGTATAAACA 3182
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 3183 TATTAAAAGAATATAAAAATGTTGAAAATCATGTACTAATGAAGTCATTGTATATTAGATTGCAATAGAATGGA 3256
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 3257 AAGACACATTTAGCTAGTAATGTACCTGGAAATCCTGAATGTCCTACGTGAGTATTAGATTTTGATAGCATGCT 3330
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 3331 TTAAAGACTGATGAATATAAAAGCAGAAGCTTCGAGTTTCCTGCTGCTTTCAAAACTGTGTCCTAGTTGAGTGA 3404
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 3405 TACAAATGATCGCAAGTTTTCTAAATCATTAAACTATTTGGTTGGTGGAGTGAGGCATGGTCTGGTATCCTCTG 3478
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 3479 ATTTGTAAAATAGCGATGGCAGTGAAGTTGTAACTGAAATTGAAGCTGATCTTCCTTTCTGGTATGTTATCTAT 3552
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 3553 TGTGCCAGCCCTTGAGATTACTTGCAGAATGTGGCTATAAGTTTTAGTAGTTTATGGATCAGAGGGATATTTTT 3626
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 3627 AAAATATGCTAATCGAAAGAACCTAGTAAATTAAATATTCCTAACAGCAAATAGAATGATTTTATGGTAACCAT 3700
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 3701 TAAAAAGAATAAGTCTTCCCCTGTCCCAGAGGTCATTCTATAATTATCAAGATAGGATAAGAGTTAGGGTTACG 3774
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 3775 ATTCTGAGAGATGTCCCAAATTCATAAAGCAATAATAATAACCTTTATATTGGTTCCCTCTTCCAAAGTTTAAC 3848
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 3849 TCTTGAGAAATGAATTCTTAGTCTTAATTGTACTTTGCTTATTCAGTACTTACAGTTTTACATGATTTTTACTC 3922
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 3923 TAAGACTTTTGGAAAGTGCCCTGCGCCCTCAGAAACAGTCGGACTATTAGTTCACAAATACTACAAGCTCTTGT 3996
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 3997 ATGGGGAAAAGAGCTTATTTTAAATAATTTGCTAAACTTTAGGAAATGATATATCAGTCTTAACAGGCATAAAG 4070
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 4071 ATCTCACCTAATGACTTGAGAAACTTTTGCTTAGTGCTTTTTTTCCCCTGTATAAATATTGTCTAGAAGGAAAG 4144
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 4145 TTAATATAGGAACAAGACTCCAAAATCCACGAAAATATGTTCCTAGTGAATATATCCTTTATCATTAATATTAG 4218
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 4219 CCCATTATATTTTCATCTGTATTTGCCTTTTAAATTTATTTGCATCTATTAAAGATAATTAGGATTACTGAGTT 4292
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 4293 TGTGTTTTTCTAATAAATCTGTTTCATCCTTTCAGTAGCACATGCCAGAGGCTCACATTTGTGCTAAGTTTCAT 4366
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 4367 GTTTCAAGACAGTCTGTAGCCGTATTTACTGGTCATGCAAGTAGAGGAGATACACATCACCAGTGTTTTTCTTA 4440
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 4441 AGTGCATAAAGGACTTATCCTCGTCCTGGAAGTCTGTTGCTTTAAAAGCAAGTATCCATAAACATTATGGCCTT 4514
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 4515 CCATTTAAAAAATCTCCATACATTTTTTAGGATCCACTTGTGCATGTAGTTGAGACCACCGTCTCTTAAAATAT 4588
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 4589 AGCACTTTTCAATTCTCTCTAAAGAAATACTTATGTAATACTATCACACGTTGTAAATTTTCATGTAATAGTGT 4662
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 4663 TTTCTGTGACTAAACTTCATTTTGATTGGCAGCTAAGACTTTTTTTCCTGTGGCTTTAATTTATCTAAGAGGTC 4736
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 4737 TTTGCATATAGATGAAATGTTTAATTTGCCTGGCGGACTATTTGCGTTTGTGTGGCCTTAGTTTGTTTATTGAC 4810
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 4811 ATTAACAAGTGTTTTAAAAGGTTTTTAATGGATAGTCTTAAATCTCAAATTTGTGTGAATAATAATTCTTTTAA 4884
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 4885 CACAGTGCTTTTTTGTAGCTGTCTGAGTGTGTTAAATTGTTAAGCTATTTCTTTGTAAAGTAGGACAATGGAAT 4958
Query 1234 ---------------------------------------------------------------- 1233
Sbjct 4959 GCATAGGTTTCTTTTTTTTCCTGTAAAGTATTTTTTTAATAAACAAAGTCTGATTTGTCCTTTA 5022
