Nucleotide Global Alignment

Description

Query:
TRCN0000481462
Subject:
NM_001085515.2
Aligned Length:
2164
Identities:
1815
Gaps:
38

Alignment

Query    1  ATGCTCCAGATCCCTCAGGAGAAGAGCCAGGCCTACCCCCGCCGCCGCCGGCCTGGCTGCTACGCATACC----  70
            |||..|||||.||.||||||||..||||||||||||||   |||.|..||.|||||..||.|||||..||    
Sbjct    1  ATGTCCCAGAACCTTCAGGAGACAAGCCAGGCCTACCC---CCGACATCGACCTGGTAGCCACGCAGGCCCTAA  71

Query   71  --GTCAGAA-------CCCCGAGGCCATCGCAGCCGCAGCTATGTACACCTTCCTGCCCGACAACTTCTCACCT  135
              |||..||       ||.|||             |||.|.||||||||.||||||||.|||||.||.||||||
Sbjct   72  AAGTCTCAAAGTTACCCCACGA-------------GCAACCATGTACACTTTCCTGCCTGACAATTTTTCACCT  132

Query  136  GCCAAGCCCAAGCCTTCCAAAGAGCTGAAGCCGCTGCTGGGCTCCGCGGTTCTGGGGCTGCTGCTTGTGCTGGC  209
            |||||.||||||||..|.||||||||||..||.||||||.||||||||||.|||||.|||||.||.|||.||||
Sbjct  133  GCCAAACCCAAGCCCACTAAAGAGCTGAGACCTCTGCTGTGCTCCGCGGTACTGGGACTGCTACTGGTGTTGGC  206

Query  210  CGCGGTGGTGGCCTGGTGCTACTACAGCGTCTCCCTACGCAAGGCGGAGCGACTTCGCGCGGAGCTGCTGGACC  283
            |||.||.||||||||||||||||||||.|.||||||||||||.||.||.||.||.|||||||||||||||||||
Sbjct  207  CGCAGTTGTGGCCTGGTGCTACTACAGTGCCTCCCTACGCAAAGCTGAACGCCTGCGCGCGGAGCTGCTGGACC  280

Query  284  TGAAAGCTGGCGGCTTCTCCATCCGCAATCAGAAGGGAGAGCAGGTCTTCCGCCTGGCCTTCCGCTCCGGCGCG  357
            ||||...||||||||||||||||||.||.||||||||.|||||.|||||||||.||||||||||.|||||.||.
Sbjct  281  TGAACCGTGGCGGCTTCTCCATCCGTAACCAGAAGGGTGAGCAAGTCTTCCGCTTGGCCTTCCGTTCCGGTGCT  354

Query  358  CTGGACCTTGACTCCTGCAGCCGCGATGGCGCCCTGCTGGGCTGCTCGCTCACGGCCGACGGGCTGCCGCTGCA  431
            ||.||||||||||||||||||||.|||||.||.|||||.||||||||.|...||||||||||.|..|||.||||
Sbjct  355  CTAGACCTTGACTCCTGCAGCCGGGATGGTGCGCTGCTTGGCTGCTCCCGAGCGGCCGACGGACGCCCGTTGCA  428

Query  432  CTTCTTCATCCAGACTGTGCGGCCCAAGGACACGGTCATGTGCTACCGCGTGCGCTGGGAGGAGGCAGCGCCGG  505
            ||||||.||.|||||.||.||.||.||||||||.||.||||||||||||||||||||||||||.||.|.|||.|
Sbjct  429  CTTCTTTATTCAGACAGTACGACCTAAGGACACTGTAATGTGCTACCGCGTGCGCTGGGAGGAAGCTGTGCCAG  502

Query  506  GCCGGGCCGTGGAGCACGCCATGTTCTTGGGCGACGCGGCGGCCCACTGGTATGGTGGCGCCGAGATGAGGACG  579
            |.||.||.|||||||||||.|||||..||||.||.||.|||||.|||||||||||.|||||.||||||||||||
Sbjct  503  GGCGTGCTGTGGAGCACGCGATGTTTCTGGGAGATGCTGCGGCGCACTGGTATGGCGGCGCAGAGATGAGGACG  576

Query  580  CAACACTGGCCCATCCGCCTGGATGGCCAGCAGGAGCCCCAGCCGTTCGTCACCAGCGATGTCTACTCCTCCGA  653
            ||||||||||||||||||||.|||||||||||.||.||.|||||.||.|||||.|||||.|||||.||.||.||
Sbjct  577  CAACACTGGCCCATCCGCCTAGATGGCCAGCAAGAACCGCAGCCATTTGTCACGAGCGACGTCTATTCATCTGA  650

Query  654  CGCCGCGTTTGGGGGCATCCTCGAGCGCTACTGGCTATCTTCGCGCGCGGCCGCCATCAAAGTCAATGACTCAG  727
            ||||||.||.|||||||||||.||||||||||||.|||||||.|||||.||.|||||||||||||||||.||||
Sbjct  651  CGCCGCATTCGGGGGCATCCTTGAGCGCTACTGGTTATCTTCACGCGCCGCTGCCATCAAAGTCAATGATTCAG  724

Query  728  TGCCCTTCCACCTGGGCTGGAACAGCACGGAGCGCTCGCTGCGGCTTCAGGCGCGCTACCACGACACGCCCTAC  801
            ||||||||||||||||||||||.|||||||||||.|||.||.|.||.|||||.||||||||||||||..|.|||
Sbjct  725  TGCCCTTCCACCTGGGCTGGAATAGCACGGAGCGTTCGATGAGACTGCAGGCACGCTACCACGACACATCTTAC  798

Query  802  AAGCCACCCGCCGGCCGCGCCGCAGCGCCAGAGCTGAGCTACCGAGTGTGCGTGGGCTCAGACGTCACCTCCAT  875
            ||||||||.||.|||||..|.||.|||||||||||.||||||||.|||||||||||||||||.|||||.|||||
Sbjct  799  AAGCCACCAGCTGGCCGTACTGCCGCGCCAGAGCTCAGCTACCGCGTGTGCGTGGGCTCAGATGTCACTTCCAT  872

Query  876  CCACAAGTACATGGTGCGTCGCTACTTCAACAAGCCGTCAAGGGTGCCAGCACCCGAGGCCTTCCGAGACCCCA  949
            |||||||||||||||.||.||.||||||||||||||.||.|||||.|||||..|.|||||||||||||||||||
Sbjct  873  CCACAAGTACATGGTTCGACGTTACTTCAACAAGCCATCCAGGGTACCAGCGTCAGAGGCCTTCCGAGACCCCA  946

Query  950  TTTGGTCCACATGGGCGCTGTACGGGCGCGCCGTGGACCAGGACAAGGTGCTGCGTTTTGCCCAACAGATCCGC  1023
            ||||||||||.|||||.|||.|.||||||||.|||||||||.||||||||||||..||.|||||.|||||||||
Sbjct  947  TTTGGTCCACGTGGGCACTGCATGGGCGCGCTGTGGACCAGAACAAGGTGCTGCAATTCGCCCAGCAGATCCGC  1020

Query 1024  CTGCACCACTTCAACAGCAGCCACCTGGAAATCGACGACATGTACACACCTGCTTATGGCGACTTCGACTTCGA  1097
            |.|||||.|||.||.||||||||||||||||||||.|||||||||||.||.||.|||||||||||..|.|||||
Sbjct 1021  CAGCACCGCTTTAATAGCAGCCACCTGGAAATCGATGACATGTACACGCCCGCCTATGGCGACTTTAATTTCGA  1094

Query 1098  TGAGGTCAAATTCCCCAACGCCAGCGACATGTTCCGCCGCCTGCGCGACGCCGGCTTCCGCGTCACGCTCTGGG  1171
            .||||.|||.||.|||||||||||.||||||||||||||||||||.||.|||||||||||||||||.||.||||
Sbjct 1095  CGAGGGCAAGTTTCCCAACGCCAGTGACATGTTCCGCCGCCTGCGAGATGCCGGCTTCCGCGTCACACTTTGGG  1168

Query 1172  TGCACCCTTTTGTCAACTACAACTCGTCGCGCTTCGGCGAGGGCGTGGAGCGCGAGCTGTTCGTGCGCGAACCC  1245
            ||||.||.|||||||||||.|||||||||.||||||||||.||.||||||||||||||||||||||||||.|||
Sbjct 1169  TGCATCCGTTTGTCAACTATAACTCGTCGAGCTTCGGCGAAGGTGTGGAGCGCGAGCTGTTCGTGCGCGAGCCC  1242

Query 1246  ACGGGCCGGTTACCTGCGCTGGTGCGCTGGTGGAACGGCATCGGCGCGGTGCTAGACTTCACGCACCCAAAGGC  1319
            |||||||||.|.||.|||||||||||||||||||||||.||.|||||.|||||.|||||||||||||||.||||
Sbjct 1243  ACGGGCCGGCTGCCCGCGCTGGTGCGCTGGTGGAACGGTATTGGCGCAGTGCTGGACTTCACGCACCCAGAGGC  1316

Query 1320  CCGCGACTGGTTCCAGGGACACCTGCGGCGGCTGCGCTCTCGCTACTCCGTGGCTTCCTTCAAGTTCGACGCGG  1393
            |||.||.|||||||||||||||||.|||||.|||||||..||||||..||||.|.|||||.|||||||||||||
Sbjct 1317  CCGAGAGTGGTTCCAGGGACACCTACGGCGCCTGCGCTTGCGCTACAACGTGACCTCCTTTAAGTTCGACGCGG  1390

Query 1394  GCGAGGTCAGCTACCTGCCGCGGGACTTCAGCACCTACCGGCCGCTGCCGGACCCCAGCGTCTGGAGCCGGCGC  1467
            |.|||||||||||||||||..|||||||||||||||||.||||.|||.|.||||||||.||.||||||.||||.
Sbjct 1391  GTGAGGTCAGCTACCTGCCCAGGGACTTCAGCACCTACAGGCCTCTGTCTGACCCCAGTGTGTGGAGCAGGCGG  1464

Query 1468  TACACTGAGATGGCGCTGCCCTTCTTCTCGCTGGCGGAGGTGCGCGTAGGCTACCAGTCACAGAACATCTCCTG  1541
            |||||.|||||||||..|||||||||||||||.||.|||||.|||||.||.|||||||||||||||||||||||
Sbjct 1465  TACACCGAGATGGCGGAGCCCTTCTTCTCGCTAGCCGAGGTCCGCGTGGGGTACCAGTCACAGAACATCTCCTG  1538

Query 1542  CTTCTTCCGCCTGGTGGATCGCGACTCTGTGTGGGGCTACGACCTGGGGTTGCGCTCACTCATCCCCGCGGTGC  1615
            |||||||||.||.|||||.||||||||.||.||||||||||||||||||.|||||||.||.|||||.|||||||
Sbjct 1539  CTTCTTCCGTCTAGTGGACCGCGACTCGGTATGGGGCTACGACCTGGGGCTGCGCTCTCTTATCCCTGCGGTGC  1612

Query 1616  TCACCGTCAGCATGCTGGGCTACCCATTCATCCTACCCGATATGGTGGGCGGCAACGCCGTGCCCCAGCGGACA  1689
            ||||||||||.|||||||||||.||.||||||.|.|||||||||.|.||.||||||||.|||||..||||.|||
Sbjct 1613  TCACCGTCAGTATGCTGGGCTATCCGTTCATCTTGCCCGATATGATAGGTGGCAACGCGGTGCCGGAGCGCACA  1686

Query 1690  GCCGGCGGC---GAT------GTGCCCGAGCGCGAGCTCTACATTCGCTGGCTGGAAGTGGCCGCCTTTATGCC  1754
            ||||||.||   |||      |.|||.|||||||||||||||.|.|||||||||||.|||||||||||.|||||
Sbjct 1687  GCCGGCCGCCAAGATGGGCCGGGGCCAGAGCGCGAGCTCTACGTGCGCTGGCTGGAGGTGGCCGCCTTCATGCC  1760

Query 1755  GGCCATGCAGTTCTCTATCCCGCCCTGGCGCTACGACGCGGAAGTGGTGGCCATCGCGCAGAAGTTCGCCGCCC  1828
            .|||||||||||.||.|||||.||.||||..||||||||.||||||||.||||||||.||.||.|||||.||.|
Sbjct 1761  TGCCATGCAGTTTTCAATCCCTCCTTGGCAGTACGACGCAGAAGTGGTAGCCATCGCACACAAATTCGCTGCTC  1834

Query 1829  TGCGGGCCTCGCTTGTGGCACCGCTGTTGCTTGAGCTGGCGGGCGAGGTCACCGACACGGGTGACCCTATCGTG  1902
            ||||.|||||.||.|||||.||.|||.||||.|||||.||.||.|||.||||||||||.||.|||||.||||||
Sbjct 1835  TGCGCGCCTCCCTCGTGGCGCCACTGCTGCTAGAGCTTGCTGGTGAGATCACCGACACTGGCGACCCCATCGTG  1908

Query 1903  CGCCCCCTTTGGTGGATTGCGCCCGGCGACGAGACAGCTCACCGTATCGACTCGCAGTTCCTTATTGGGGACAC  1976
            ||||||||.||||||||.||.||.||.||.||.||.||.||.||.||.|||||.|||||.||.||.||||||||
Sbjct 1909  CGCCCCCTGTGGTGGATCGCACCGGGGGATGAAACGGCCCATCGCATTGACTCACAGTTTCTCATCGGGGACAC  1982

Query 1977  GCTGCTTGTGGCCCCGGTGCTGGAGCCAGGCAAGCAGGAGCGCGACGTCTATTTGCCCGCCGGCAAGTGGCGCA  2050
            ||||.|.|||||.||||||||.|||||.||.|||||.|||||.||.|||||..||||.||||||||.|||||.|
Sbjct 1983  GCTGTTGGTGGCGCCGGTGCTAGAGCCTGGTAAGCAAGAGCGTGATGTCTACCTGCCTGCCGGCAAATGGCGAA  2056

Query 2051  GCTACAAGGGTGAGCTTTTCGACAAGACGCCGGTGCTGCTCACCGATTACCCGGTCGACCTGGATGAGATCGCC  2124
            |||||||||||||.|||||.|||||||||||||||||||||||.||||||||.|||||||||||||||.|||||
Sbjct 2057  GCTACAAGGGTGAACTTTTTGACAAGACGCCGGTGCTGCTCACGGATTACCCTGTCGACCTGGATGAGGTCGCC  2130

Query 2125  TACTTTACCTGGGCGTCC  2142
            ||.||.||||||||.|||
Sbjct 2131  TATTTCACCTGGGCTTCC  2148

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.