Nucleotide Global Alignment

Description

Query:
TRCN0000481587
Subject:
NM_001252498.1
Aligned Length:
4512
Identities:
1169
Gaps:
3213

Alignment

Query    1  ATGAACTCACCCGTGGACCCTGGCGCTAGGCAGGCGTTGAGGAAGAAGCCACCCGAGCGGACTCCCGAGGACTT  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  AAATACTATTTATTCTTATCTTCATGGAATGGAAATATTATCAAATCTCAGGGAACATCAGCTTAGATTAATGT  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  CTGCAAGAGCACGCTATGAGAGATACAGTGGCAATCAGGTTCTCTTTTGTTCAGAAACGATTGCCAGATGTTGG  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  TATATCCTACTTTCTGGATCTGTGCTTGTAAAAGGCTCCATGGTCTTGCCTCCTTGCAGTTTTGGTAAGCAGTT  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  TGGAGGAAAAAGAGGATGTGATTGTCTTGTATTAGAGCCTTCAGAAATGATTGTGGTAGAGAATGCCAAAGATA  370
                           ||| |.||.|||||  ||.||               |||       .|.||||      
Sbjct    1  ---------------ATG-GCTTTTCTTG--TTCGA---------------TGT-------TACGCCA------  28

Query  371  ATGAAGATAGTATTCTACAAAGAGAAATTCCTGCCAGACAATCCCGAAGAAGATTTCGGAAAATTAACTATAAA  444
                  ||.||.|||..|.|.|.|     |||                                          
Sbjct   29  ------ATTGTCTTCAGCCATGGG-----CCT------------------------------------------  49

Query  445  GGAGAGCGCCAAACCATTACTGATGATGTGGAGGTTAACAGCTATCTTTCTCTTCCAGCTGATCTTACCAAGAT  518
                    |||||                                      |||||||||||||||||||||||
Sbjct   50  --------CCAAA--------------------------------------CTTCCAGCTGATCTTACCAAGAT  77

Query  519  GCATCTCACAGAAAACCCTCATCCACAGGTGACTCATGTGTCTTCTAGTCAGTCTGGTTGTAGCATTGCCAGTG  592
            |||.||||||||.||||||||||||||||||||.|||||||||||||||||||||||.||||||||||||||||
Sbjct   78  GCACCTCACAGACAACCCTCATCCACAGGTGACGCATGTGTCTTCTAGTCAGTCTGGCTGTAGCATTGCCAGTG  151

Query  593  ACTCTGGAAGCAGCAGTTTATCTGATATCTATCAGGCTACGGAGAGTGAGGTAGGAGATGTAGATTTGACACGT  666
            |||||||.||||||||||||||.|||||||||||||||||.||||||||.|||||||||||||||||.|||||.
Sbjct  152  ACTCTGGGAGCAGCAGTTTATCCGATATCTATCAGGCTACAGAGAGTGAAGTAGGAGATGTAGATTTAACACGC  225

Query  667  CTTCCAGAAGGACCTGTTGATTCTGAGGATGACGAAGAGGAAGATGAAGAGATTGATCGAACAGATCCATTGCA  740
            ||||||||||||||||||||||||||||||||.||.|||||.||.||||||||||||.|||||||||||.||||
Sbjct  226  CTTCCAGAAGGACCTGTTGATTCTGAGGATGAAGAGGAGGAGGAAGAAGAGATTGATAGAACAGATCCACTGCA  299

Query  741  GGGGCGAGATCTTGTTCGAGAATGTCTTGAAAAAGAACCTGCAGACAAAACTGATGATGACATTGAACAATTGC  814
            |||.||||||||||||||.||.|||||||||||.|||||.||||||||||||||||||||..|||||||.||.|
Sbjct  300  GGGTCGAGATCTTGTTCGGGAGTGTCTTGAAAAGGAACCCGCAGACAAAACTGATGATGATGTTGAACAGTTAC  373

Query  815  TGGAGTTTATGCACCAGCTCCCTGCATTTGCAAACATGACCATGTCTGTAAGGAGAGAACTCTGCTCAGTGATG  888
            |.|||||.|||||||||||.|||||.|||||.|||||||||||||||||||||||||||||||||||.||.|||
Sbjct  374  TTGAGTTCATGCACCAGCTGCCTGCCTTTGCGAACATGACCATGTCTGTAAGGAGAGAACTCTGCTCCGTCATG  447

Query  889  ATTTTTGAAGTGGTAGAGCAGGCTGGAGCTATTATTCTTGAAGATGGGCAAGAGCTTGACTCATGGTATGTTAT  962
            .||||||||||.||||||||||||||.|||.||||||||||||||||||||||||||||||||||||||||.||
Sbjct  448  GTTTTTGAAGTAGTAGAGCAGGCTGGGGCTGTTATTCTTGAAGATGGGCAAGAGCTTGACTCATGGTATGTCAT  521

Query  963  TTTAAACGGCACTGTGGAAATCAGTCATCCAGATGGAAAAGTTGAAAATTTGTTTATGGGAAATAGTTTTGGAA  1036
            ||||||.||||||||.|||||.||||||||||||||.|||.|.||||||.|.||.|||||||||||||||||.|
Sbjct  522  TTTAAATGGCACTGTAGAAATTAGTCATCCAGATGGGAAAATAGAAAATCTCTTCATGGGAAATAGTTTTGGGA  595

Query 1037  TTACTCCCACTCTGGATAAGCAGTACATGCATGGAATTGTCAGGACTAAAGTAGATGATTGTCAGTTTGTCTGC  1110
            ||...|||||.||||||||||||.|||||||||||..|||||||||.|||||.|||||||||||||||||||||
Sbjct  596  TTGTCCCCACGCTGGATAAGCAGCACATGCATGGAGCTGTCAGGACCAAAGTCGATGATTGTCAGTTTGTCTGC  669

Query 1111  ATAGCCCAGCAAGATTATTGGAGAATTTTAAACCATGTGGAAAAAAATACCCATAAAGTTGAGGAAGAGGGAGA  1184
            |||||.||.|||||.|||||||||||||||||.|||||||||||||||||.||.||||||||||||||||||||
Sbjct  670  ATAGCTCAACAAGACTATTGGAGAATTTTAAATCATGTGGAAAAAAATACTCACAAAGTTGAGGAAGAGGGAGA  743

Query 1185  AATTGTTATGGTACATGAGCATCGGGAACTAGACCGGAGTGGAACCAGGAAAGGACACATTGTGATCAAGGCAA  1258
            .|||||.||||||||||||||.||.||.|||||||||||.|||||||||||||||||||||||.||||||||||
Sbjct  744  GATTGTCATGGTACATGAGCACCGTGAGCTAGACCGGAGCGGAACCAGGAAAGGACACATTGTAATCAAGGCAA  817

Query 1259  CACCTGAGCGTCTCATAATGCATTTAATAGAAGAACATTCCATCGTGGATCCAACTTATATAGAAGATTTTCTA  1332
            ||||||||||||||||.||||||||.||||||||||||||.||.|||||.|||||.||.|||||||||||.||.
Sbjct  818  CACCTGAGCGTCTCATCATGCATTTGATAGAAGAACATTCTATTGTGGACCCAACATACATAGAAGATTTCCTC  891

Query 1333  TTAACTTACAGGACATTTCTTGAAAGTCCTTTGGATGTTGGGATCAAACTATTGGAATGGTTTAAGATCGACAG  1406
            |||||||||||||||||||||||||.|||||||||||||||||||||.||.|||||||||||||||||.||||.
Sbjct  892  TTAACTTACAGGACATTTCTTGAAACTCCTTTGGATGTTGGGATCAAGCTTTTGGAATGGTTTAAGATTGACAA  965

Query 1407  CTTAAGAGATAAGGTGACACGGATTGTATTATTATGGGTAAATAATCATTTTAATGATTTTGAAGGTGACCCTG  1480
            |.||||.|||||||||||||||||||||.|.||||||||||||||||||||||||||||||||||||||.||||
Sbjct  966  CCTAAGGGATAAGGTGACACGGATTGTACTCTTATGGGTAAATAATCATTTTAATGATTTTGAAGGTGATCCTG  1039

Query 1481  CTATGACTCGATTTCTAGAGGAATTTGAAAAAAATCTGGAAGATACAAAGATGAATGGTCATCTCCGGTTATTG  1554
            |||||||||.|||||||||.||||||||||.||||.|||||||||||||.|||||||||||.|||.||||||||
Sbjct 1040  CTATGACTCAATTTCTAGAAGAATTTGAAAGAAATTTGGAAGATACAAAAATGAATGGTCACCTCAGGTTATTG  1113

Query 1555  AATATTGCCTGTGCTGCAAAGGCTAAGTGGAGACAGGTTGTGCTGCAAAAGGCTTCCCGCGAGTCCCCTCTACA  1628
            ||||||||||||||||||||||||||||||||.||.|||||.|||||.|||||.|||||.||||||||.||.||
Sbjct 1114  AATATTGCCTGTGCTGCAAAGGCTAAGTGGAGGCAAGTTGTACTGCAGAAGGCGTCCCGTGAGTCCCCGCTGCA  1187

Query 1629  ATTCAGCCTTAATGGAGGGAGTGAGAAGGGATTTGGTATTTTTGTTGAAGGAGTAGAACCTGGTAGCAAAGCTG  1702
            .|||.||||||.|||.||.|||||||||||||||||..|.||||||||||.|||||||.|||||||||||||||
Sbjct 1188  CTTCTGCCTTACTGGGGGCAGTGAGAAGGGATTTGGAGTCTTTGTTGAAGAAGTAGAATCTGGTAGCAAAGCTG  1261

Query 1703  CTGATTCAGGACTGAAACGTGGTGATCAGATTATGGAAGTAAATGGACAAAACTTTGAGAATATTACATTTATG  1776
            ||||..|||||||||||.|.|||||||||     |.|||||||                               
Sbjct 1262  CTGACGCAGGACTGAAAAGGGGTGATCAG-----GTAAGTAAA-------------------------------  1299

Query 1777  AAAGCCGTTGAAATTTTGAGGAATAATACTCATCTTGCACTTACTGTGAAGACCAACATTTTTGTGTTCAAAGA  1850
                                                                                      
Sbjct 1300  --------------------------------------------------------------------------  1299

Query 1851  GTTACTTTTTAGGACTGAACAAGAGAAATCTGGTGTTCCTCATATTCCCAAAATTGCTGAAAAAAAAAGTAATC  1924
                                                                                      
Sbjct 1300  --------------------------------------------------------------------------  1299

Query 1925  GCCATTCTATCCAGCATGTGCCAGGAGATATTGAACAGACATCACAGGAGAAAGGAAGTAAGAAAGTTAAAGCA  1998
                                                                                      
Sbjct 1300  --------------------------------------------------------------------------  1299

Query 1999  AATACTGTTTCAGGTGGAAGAAACAAAATCAGGAAGATTTTGGATAAAACACGATTTAGTATCTTGCCTCCAAA  2072
                                                                                      
Sbjct 1300  --------------------------------------------------------------------------  1299

Query 2073  GCTATTTAGTGATGGAGGCCTAAGCCAATCACAAGATGACAGCATTGTGGGAACAAGGCACTGTAGGCATAGTC  2146
                                                                                      
Sbjct 1300  --------------------------------------------------------------------------  1299

Query 2147  TGGCTATAATGCCCATCCCTGGAACACTCTCATCCAGCAGCCCTGATCTCCTGCAGCCTACCACCAGTATGTTG  2220
                                                                                      
Sbjct 1300  --------------------------------------------------------------------------  1299

Query 2221  GATTTTTCCAATCCTTCAGATATCCCTGATCAAGTTATAAGAGTTTTCAAAGTGGATCAGCAAAGTTGCTACAT  2294
                                                                                      
Sbjct 1300  --------------------------------------------------------------------------  1299

Query 2295  TATCATCAGTAAAGACACCACAGCTAAAGAAGTAGTTTTTCATGCTGTTCATGAATTTGGTTTGACCGGTGCAT  2368
                                                                                      
Sbjct 1300  --------------------------------------------------------------------------  1299

Query 2369  CCGACACATATTCTCTCTGTGAAGTTTCTGTTACTCCTGAGGGTGTCATAAAACAGAGAAGACTTCCAGATCAG  2442
                                                                                      
Sbjct 1300  --------------------------------------------------------------------------  1299

Query 2443  TTCTCCAAATTAGCTGATAGAATTCAACTCAATGGAAGGTATTACTTAAAAAATAACATGGAAACAGAAACCTT  2516
                                                                                      
Sbjct 1300  --------------------------------------------------------------------------  1299

Query 2517  ATGTTCAGATGAAGATGCTCAAGAACTAGTTAAGGAAAGCCAGCTATCCATGCTGCAGCTCAGTACCATTGAGG  2590
                                                                                      
Sbjct 1300  --------------------------------------------------------------------------  1299

Query 2591  TGGCCACCCAGCTGTCAATGAGGGACTTTGATTTGTTTCGTAATATTGAACCGACTGAGTACATCGATGACCTT  2664
                                                                                      
Sbjct 1300  --------------------------------------------------------------------------  1299

Query 2665  TTTAAGTTAAATTCCAAAACAGGAAATACTCATTTGAAGAGGTTTGAGGACATTGTAAACCAAGAGACATTCTG  2738
                                                                                      
Sbjct 1300  --------------------------------------------------------------------------  1299

Query 2739  GGTTGCCTCAGAAATTTTAACTGAAGCAAATCAGCTCAAACGAATGAAGATTATTAAGCATTTTATTAAAATTG  2812
                                                                                      
Sbjct 1300  --------------------------------------------------------------------------  1299

Query 2813  CACTTCATTGTCGAGAATGTAAGAACTTCAATTCCATGTTTGCAATAATAAGTGGCTTGAACCTGGCATCTGTA  2886
                                                                                      
Sbjct 1300  --------------------------------------------------------------------------  1299

Query 2887  GCAAGACTCAGAGGAACTTGGGAAAAGTTACCAAGCAAATACGAGAAACATCTTCAAGATCTACAAGACATTTT  2960
                                                                                      
Sbjct 1300  --------------------------------------------------------------------------  1299

Query 2961  TGATCCATCTAGAAACATGGCAAAGTATAGAAATATTCTTAGTAGTCAAAGTATGCAGCCTCCAATTATTCCAC  3034
                                                                                      
Sbjct 1300  --------------------------------------------------------------------------  1299

Query 3035  TCTTCCCTGTTGTCAAGAAAGATATGACATTTCTACATGAAGGAAATGACTCCAAAGTAGATGGTTTAGTAAAC  3108
                                                                                      
Sbjct 1300  --------------------------------------------------------------------------  1299

Query 3109  TTTGAGAAGTTAAGAATGATTTCCAAGGAAATCCGCCAAGTTGTTCGAATGACTTCTGCTAACATGGACCCAGC  3182
                                                                                      
Sbjct 1300  --------------------------------------------------------------------------  1299

Query 3183  TATGATGTTTCGACAGAGGAAGAAGAGGTGGCGGAGTCTGGGGTCACTGAGTCAAGGAAGCACAAATTCAAACA  3256
                                                                                      
Sbjct 1300  --------------------------------------------------------------------------  1299

Query 3257  TGCTGGATGTTCAGGGAGGTGCTCACAAAAAAAGGGCACGCCGCAGCTCTCTGCTTAATGCCAAGAAGCTATAT  3330
                                                                                      
Sbjct 1300  --------------------------------------------------------------------------  1299

Query 3331  GAGGATGCCCAAATGGCAAGGAAGGTGAAGCAGTATCTTTCCAGTCTCGATGTAGAGACAGATGAGGAGAAGTT  3404
                                                                                      
Sbjct 1300  --------------------------------------------------------------------------  1299

Query 3405  CCAGATGATGTCATTACAGTGGGAGCCTGCATATGGTACCTTGACCAAGAATTTAAGTGAGAAAAGATCAGCCA  3478
                                                                                      
Sbjct 1300  --------------------------------------------------------------------------  1299

Query 3479  AATCATCTGAAATGTCTCCAGTGCCTATGAGGTCAGCTGGCCAAACAACTAAAGCCCACTTGCATCAACCCCAC  3552
                                                                                      
Sbjct 1300  --------------------------------------------------------------------------  1299

Query 3553  AGAGTAAGCCAGGTGCTTCAGGTGCCAGCTGTTAATTTGCACCCCATCAGGAAGAAGGGACAAACAAAAGACCC  3626
                                                                                      
Sbjct 1300  --------------------------------------------------------------------------  1299

Query 3627  TGCACTGAATACAAGTTTACCTCAGAAAGTTTTAGGAACAACTGAAGAAATAAGTGGTAAGAAGCATACAGAAG  3700
                                                                                      
Sbjct 1300  --------------------------------------------------------------------------  1299

Query 3701  ACACTATTTCTGTGGCGTCATCTTTACATTCTAGTCCTCCTGCATCTCCTCAAGGCTCCCCTCACAAAGGTTAC  3774
                                                                                      
Sbjct 1300  --------------------------------------------------------------------------  1299

Query 3775  ACACTTATTCCATCAGCTAAATCTGACAACTTGTCTGACTCCAGCCATAGTGAGATTTCTTCACGGTCCAGCAT  3848
                                                                                      
Sbjct 1300  --------------------------------------------------------------------------  1299

Query 3849  CGTGAGCAATTGTTCTGTTGACTCCATGTCTGCAGCTCTACAGGATGAACGGTGTTCCTCTCAGGCCCTGGCAG  3922
                                                                                      
Sbjct 1300  --------------------------------------------------------------------------  1299

Query 3923  TCCCTGAATCCACTGGGGCATTGGAAAAGACAGAGCACGCTTCAGGGATAGGAGATCATAGTCAACATGGCCCT  3996
                                                                                      
Sbjct 1300  --------------------------------------------------------------------------  1299

Query 3997  GGGTGGACACTCTTGAAGCCATCTCTAATCAAGTGTTTAGCTGTCTCATCGTCTGTGAGCAATGAAGAGATTTC  4070
                                                                                      
Sbjct 1300  --------------------------------------------------------------------------  1299

Query 4071  TCAAGAGCATATCATTATAGAAGCAGCTGACAGTGGTCGTGGAAGTTGGACTTCGTGTTCAAGCAGCTCCCATG  4144
                                                                                      
Sbjct 1300  --------------------------------------------------------------------------  1299

Query 4145  ACAACTTCCAAAGCCTTCCAAACCCAAAAAGCTGGGATTTTTTGAACTCTTACAGACATACCCATTTGGATGAC  4218
                                                                                      
Sbjct 1300  --------------------------------------------------------------------------  1299

Query 4219  CCCATTGCTGAAGTTGAACCCACTGACTCTGAGCCCTATTCCTGTTCTAAAAGCTGCTCTAGAACTTGTGGGCA  4292
                                                                                      
Sbjct 1300  --------------------------------------------------------------------------  1299

Query 4293  GTGTAAAGGAAGCCTAGAGAGAAAGAGTTGGACCTCCTCCAGTTCTCTGTCTGACACGTATGAACCAAACTATG  4366
                                                                                      
Sbjct 1300  --------------------------------------------------------------------------  1299

Query 4367  GGACAGTTAAACAGAGAGTATTGGAGAGCACCCCAGCTGAGTCATCTGAAGGCTTGGACCCCAAGGATGCCACT  4440
                                                                                      
Sbjct 1300  --------------------------------------------------------------------------  1299

Query 4441  GACCCAGTTTATAAAACTGTCACTTCAAGTACAGAAAAGGGCTTGATTGAAAATGAACAAGTTTCAGCAGTC  4512
                                                                                    
Sbjct 1300  ------------------------------------------------------------------------  1299

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