Nucleotide Global Alignment

Description

Query:
TRCN0000489808
Subject:
XM_017006210.1
Aligned Length:
3442
Identities:
880
Gaps:
2526

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGCAATTCCCCTCGCCTCCAGCCGCGAGGAGCTCCCCGGCGCCGCAGGCAGCGTCCTCCTCCGAAGCAGCTGC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  ACCTGCAACTGGGCAGCCTGGACCCTCGTGCCCTGTTCCCGGGACCTCGCGCAGGGGGCGCCCCGGGACACCCC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CTGCGGGCCGGGTGGAGGAGGAAGAGGAGGAGGAGGAAGAAGACGTGGACAAGGACCCCCATCCTACCCAGAAC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  ACCTGCCTGCGCTGCCGCCACTTCTCTTTAAGGGAGAGGAAAAGAGAGCCTAGGAGAACCATGGGGGGCTGCGA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AGTCCGGGAATTTCTTTTGCAATTTGGTTTCTTCTTGCCTCTGCTGACAGCGTGGCCAGGCGACTGCAGTCACG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TCTCCAACAACCAAGTTGTGTTGCTTGATACAACAACTGTACTGGGAGAGCTAGGATGGAAAACATATCCATTA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  AATGGGTGGGATGCCATCACTGAAATGGATGAACATAATAGGCCCATTCACACATACCAGGTATGTAATGTAAT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GGAACCAAACCAAAACAACTGGCTTCGTACAAACTGGATCTCCCGTGATGCAGCTCAGAAAATTTATGTGGAAA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TGAAATTCACACTAAGGGATTGTAACAGCATCCCATGGGTCTTGGGGACTTGCAAAGAAACATTTAATCTGTTT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TATATGGAATCAGATGAGTCCCACGGAATTAAATTCAAGCCAAACCAGTATACAAAGATCGACACAATTGCTGC  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TGATGAGAGTTTTACCCAGATGGATTTGGGTGATCGCATCCTCAAACTCAACACTGAAATTCGTGAGGTGGGGC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  CTATAGAAAGGAAAGGATTTTATCTGGCTTTTCAAGACATTGGGGCGTGCATTGCCCTGGTTTCAGTCCGTGTT  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TTCTACAAGAAATGCCCCTTCACTGTTCGTAACTTGGCCATGTTTCCTGATACCATTCCAAGGGTTGATTCCTC  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CTCTTTGGTTGAAGTACGGGGTTCTTGTGTGAAGAGTGCTGAAGAGCGTGACACTCCTAAACTGTATTGTGGAG  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  CTGATGGAGATTGGCTGGTTCCTCTTGGAAGGTGCATCTGCAGTACAGGATATGAAGAAATTGAGGGTTCTTGC  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  CATGCTTGCAGACCAGGATTCTATAAAGCTTTTGCTGGGAACACAAAATGTTCTAAATGTCCTCCACACAGTTT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  AACATACATGGAAGCAACTTCTGTCTGTCAGTGTGAAAAGGGTTATTTCCGAGCTGAAAAAGACCCACCTTCTA  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  TGGCATGTACCAGGCCACCTTCAGCTCCTAGGAATGTGGTTTTTAACATCAATGAAACAGCCCTTATTTTGGAA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  TGGAGCCCACCAAGTGACACAGGAGGGAGAAAAGATCTCACATACAGTGTAATCTGTAAGAAATGTGGCTTAGA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  CACCAGCCAGTGTGAGGACTGTGGTGGAGGACTCCGCTTCATCCCAAGACATACAGGCCTGATCAACAATTCCG  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  TGATAGTACTTGACTTTGTGTCTCACGTGAATTACACCTTTGAAATAGAAGCAATGAATGGAGTTTCTGAGTTG  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  AGTTTTTCTCCCAAGCCATTCACAGCTATTACAGTGACCACGGATCAAGATGCACCTTCCCTGATAGGTGTGGT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  AAGGAAGGACTGGGCATCCCAAAATAGCATTGCCCTATCATGGCAAGCACCTGCTTTTTCCAATGGAGCCATTC  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  TGGACTACGAGATCAAGTACTATGAGAAAGTCTACCCACGGATAGCGCCGGCATTTTGGCACTACCTGCGGGTA  1776

Query    1  -------ATGA-AAG-------ACTC-TCCATTTCAAGTGACAAA------ACTGT-------ACTGG-CTTAA  44
                   |||| .||       |||| ||||   ||||...||||      |.|||       ||.|| |||||
Sbjct 1777  GAAGAACATGAGCAGCTGACCTACTCTTCCA---CAAGGTCCAAAGCCCCCAGTGTCATCATCACAGGTCTTAA  1847

Query   45  --------------------------------TGAAAAGTGGGAC----TTTATTGCCT-CAG-----------  70
                                            |||.||.||.|||    |..|.||.|| |||           
Sbjct 1848  GCCAGCCACCAAATATGTATTTCACATCCGAGTGAGAACTGCGACAGGATACAGTGGCTACAGTCAGAAATTTG  1921

Query   71  ---------------------CTTCTGACATGGCAGCAGAACAAGGACAGATTCTCGTGATAGCCACCGCCGCT  123
                                 |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1922  AATTTGAAACAGGAGATGAAACTTCTGACATGGCAGCAGAACAAGGACAGATTCTCGTGATAGCCACCGCCGCT  1995

Query  124  GTTGGCGGATTCACTCTCCTCGTCATCCTCACTTTATTCTTCTTGATCACTGGGAGATGTCAGTGGTACATAAA  197
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1996  GTTGGCGGATTCACTCTCCTCGTCATCCTCACTTTATTCTTCTTGATCACTGGGAGATGTCAGTGGTACATAAA  2069

Query  198  AGCCAAGATGAAGTCAGAAGAGAAGAGAAGAAACCACTTACAGAATGGGCATTTGCGCTTCCCGGGAATTAAAA  271
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2070  AGCCAAGATGAAGTCAGAAGAGAAGAGAAGAAACCACTTACAGAATGGGCATTTGCGCTTCCCGGGAATTAAAA  2143

Query  272  CTTACATTGATCCAGATACATATGAAGACCCATCCCTAGCAGTCCATGAATTTGCAAAGGAGATTGATCCCTCA  345
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2144  CTTACATTGATCCAGATACATATGAAGACCCATCCCTAGCAGTCCATGAATTTGCAAAGGAGATTGATCCCTCA  2217

Query  346  AGAATTCGTATTGAGAGAGTCATTGGGGCAGGTGAATTTGGAGAAGTCTGTAGTGGGCGTTTGAAGACACCAGG  419
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2218  AGAATTCGTATTGAGAGAGTCATTGGGGCAGGTGAATTTGGAGAAGTCTGTAGTGGGCGTTTGAAGACACCAGG  2291

Query  420  GAAAAGAGAGATCCCAGTTGCCATTAAAACTTTGAAAGGTGGCCACATGGATCGGCAAAGAAGAGATTTTCTAA  493
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2292  GAAAAGAGAGATCCCAGTTGCCATTAAAACTTTGAAAGGTGGCCACATGGATCGGCAAAGAAGAGATTTTCTAA  2365

Query  494  GAGAAGCTAGTATCATGGGCCAGTTTGACCATCCAAACATCATTCGCCTAGAAGGGGTTGTCACCAAAAGATCC  567
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct 2366  GAGAAGCTAGTATCATGGGCCAGTTTGACCATCCAAACATCATTCGCCTAGAAGGGGTTGTCACCAAAA-----  2434

Query  568  TTCCCGGCCATTGGGGTGGAGGCGTTTTGCCCCAGCTTCCTGAGGGCAGGGTTTTTAAATAGCATCCAGGCCCC  641
                                                                                      
Sbjct 2435  --------------------------------------------------------------------------  2434

Query  642  GCATCCAGTGCCAGGGGGAGGATCTTTGCCCCCCAGGATTCCTGCTGGCAGACCAGTAATGATTGTGGTGGAAT  715
                                                           |||||||||||||||||||||||||||
Sbjct 2435  -----------------------------------------------GCAGACCAGTAATGATTGTGGTGGAAT  2461

Query  716  ATATGGAGAATGGATCCCTAGACTCCTTTTTGCGGAAGCATGATGGCCACTTCACAGTCATCCAGTTGGTCGGA  789
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2462  ATATGGAGAATGGATCCCTAGACTCCTTTTTGCGGAAGCATGATGGCCACTTCACAGTCATCCAGTTGGTCGGA  2535

Query  790  ATGCTCCGAGGCATTGCATCAGGCATGAAGTATCTTTCTGATATGGGTTATGTTCATCGAGACCTAGCGGCTCG  863
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2536  ATGCTCCGAGGCATTGCATCAGGCATGAAGTATCTTTCTGATATGGGTTATGTTCATCGAGACCTAGCGGCTCG  2609

Query  864  GAATATACTGGTCAATAGCAACTTAGTATGCAAAGTTTCTGATTTTGGTCTCTCCAGAGTGCTGGAAGATGATC  937
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2610  GAATATACTGGTCAATAGCAACTTAGTATGCAAAGTTTCTGATTTTGGTCTCTCCAGAGTGCTGGAAGATGATC  2683

Query  938  CAGAAGCTGCTTATACAACAACTG---------ACCTCTT-------------CCAAA--------CTCTA---  978
            ||||||||||||||||||||||||         .||.|.|             |||.|        | |||   
Sbjct 2684  CAGAAGCTGCTTATACAACAACTGGTGGAAAAATCCCCATAAGGTGGACAGCCCCAGAAGCCATCGC-CTACAG  2756

Query  979  ACACTTAACCTC----------------TGCTAT---------------------------TCTGCATAAA---  1006
            |.|.||..||||                .|||||                           |.||.|.|.|   
Sbjct 2757  AAAATTCTCCTCAGCAAGCGATGCATGGAGCTATGGCATTGTCATGTGGGAGGTCATGTCCTATGGAGAGAGAC  2830

Query 1007  --TTCTGAGAAA-----AGCCAAATT----TTCTGTCGGTCTAAGAAG---ACA--------------------  1046
              |..||.||||     |.||||..|    |||||||..|..||||||   |||                    
Sbjct 2831  CTTATTGGGAAATGTCTAACCAAGATGTCATTCTGTCCATTGAAGAAGGGTACAGACTTCCAGCTCCCATGGGC  2904

Query 1047  --------------------------------------------------------------------------  1046
                                                                                      
Sbjct 2905  TGTCCAGCATCTCTACACCAGCTGATGCTCCACTGCTGGCAGAAGGAGAGAAATCACAGACCAAAATTTACTGA  2978

Query 1047  --------------------------------------------------------------------------  1046
                                                                                      
Sbjct 2979  CATTGTCAGCTTCCTTGACAAACTGATCCGAAATCCCAGTGCCCTTCACACCCTGGTGGAGGACATCCTTGTAA  3052

Query 1047  --------------------------------------------------------------------------  1046
                                                                                      
Sbjct 3053  TGCCAGAGTCCCCTGGTGAAGTTCCGGAATATCCTTTGTTTGTCACAGTTGGTGACTGGCTAGATTCTATAAAG  3126

Query 1047  --------------------------------------------------------------------------  1046
                                                                                      
Sbjct 3127  ATGGGGCAATACAAGAATAACTTCGTGGCAGCAGGGTTTACAACATTTGACCTGATTTCAAGAATGAGCATTGA  3200

Query 1047  --------------------------------------------------------------------------  1046
                                                                                      
Sbjct 3201  TGACATTAGAAGAATTGGAGTCATACTTATTGGACACCAGAGACGAATAGTCAGCAGCATACAGACTTTACGTT  3274

Query 1047  --------------------------------------  1046
                                                  
Sbjct 3275  TACACATGATGCACATACAGGAGAAGGGATTTCATGTA  3312

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