Nucleotide Global Alignment

Description

• Query: TRCN0000491440
• Subject: NR_103997.2
• Aligned Length: 3891
• Identities: 1522
• Gaps: 2343

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GAGTGCCTCGAGGGCGCCGTTCGGGCGGGGAGGATCCCGCGGGTCCCACTGACCCACGCGGGGTGGGGCCAGGG  74

Query    1  ----------------------------------ATGCTTGGGCCAGGGTCCAATCGCAGGCGCCCCACGCAGG  40
                                              ||||||||||||||||||||||||||||||||||||||||
Sbjct   75  GTGGACGCTCGCCCGTACGCGGTCGCTACTGATCATGCTTGGGCCAGGGTCCAATCGCAGGCGCCCCACGCAGG  148

Query   41  GGGAGCGAGGCCCAGGGTCCCCCGGAGAGCCCATGGAGAAGTACCAGGTTTTGTACCAGCTGAATCCTGGGGCC  114
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  GGGAGCGAGGCCCAGGGTCCCCCGGAGAGCCCATGGAGAAGTACCAGGTTTTGTACCAGCTGAATCCTGGGGCC  222

Query  115  TTGGGGGTGAACCTGGTGGTGGAGGAAATGGAAACCAAAGTCAAGCATGTGATAAAGCAGGTGGAATGCATGGA  188
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  TTGGGGGTGAACCTGGTGGTGGAGGAAATGGAAACCAAAGTCAAGCATGTGATAAAGCAGGTGGAATGCATGGA  296

Query  189  TGACCATTACGCCAGTCAGGCCCTGGAGGAGCTGATGCCACTGCTGAAGCTGCGGCACGCCCACATCTCTGTGT  262
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  TGACCATTACGCCAGTCAGGCCCTGGAGGAGCTGATGCCACTGCTGAAGCTGCGGCACGCCCACATCTCTGTGT  370

Query  263  ACCAGGAGCTGTTCATCACGTGGAATGGGGAGATCTCTTCTCTGTACCTCTGCCTGGTGATGGAGTTCAATGAG  336
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  ACCAGGAGCTGTTCATCACGTGGAATGGGGAGATCTCTTCTCTGTACCTCTGCCTGGTGATGGAGTTCAATGAG  444

Query  337  CTCAGCTTCCAGGAGGTCATTGAGGATAAGAGGAAGGCAAAGAAAATCATTGACTCTGAG--------------  396
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
Sbjct  445  CTCAGCTTCCAGGAGGTCATTGAGGATAAGAGGAAGGCAAAGAAAATCATTGACTCTGAGATCAAGACAGAAGG  518

Query  397  ------------------------------------TGGATGCAGAATGTGCTG--------------------  414
                                                ||..|.||||.|||.|||                    
Sbjct  519  CGTTCCTAACACTAGAAGGTTCCCAGTCGGTGACCATGATTCCAGATTGTTCTGCCGGTCCCTGAAGTTCCTAG  592

Query  415  ------------------GGCCAG--------------------------------------------------  420
                              |.||||                                                  
Sbjct  593  ACAAGGTTTTGCTATGTTGCCCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCCACCCGCCTCGGCCTCCCA  666

Query  421  --GTGCTG------------------GACGCGC-------------------------------------TGGA  437
              ||||||                  |.|||||                                     ||||
Sbjct  667  GAGTGCTGGGATTACAGATGTGAGCCGCCGCGCCTAGCCAGTTCACTTTCTTAATGATGTCTTTTGATGATGGA  740

Query  438  A-------------------------------------------------------------------------  438
            |                                                                         
Sbjct  741  AAGTCCTAACTGTAATGGAGTTCGCTTTCCCAATGCTGACTCTTATGGTTAGTGCCTTTGGAGTTTAAGAAGCA  814

Query  439  -TACCTGCACCA---------------------------TTTGGA-----------------------------  455
             |.|||||.|||                           |.||||                             
Sbjct  815  TTTCCTGCTCCAAGATCATGAAGATACTCTCCTCTGTCTTATGGAAGCTTGGTTATTTTTGCCTTCACATTTAG  888

Query  456  ------CATCATCCACAG--GAAT--------------------------------------------------  471
                  ||||..||.|||  ||||                                                  
Sbjct  889  ATCTTTCATCTACCCCAGATGAATGCTACCTGCTTTTACCCTGAGAACTGTGTTTGGGGGGACCATGTACCCCT  962

Query  472  ------CTC-----------------------------------------------------------------  474
                  |||                                                                 
Sbjct  963  GAGGGGCTCTTCGGGGCACACAGCTCTTCTCTTACCATGGGCCTCAGAGGCAGGCCCGGAGTGAGTTTCAGACT  1036

Query  475  --------------------------------------AAACC-------------------------------  479
                                                  |||||                               
Sbjct 1037  TTGTGAGTGAAGCCCTTCAAAACACGAAATATTCCCAGAAACCCAGTAAGTGCAGCAGACCTACTCTAACTGGG  1110

Query  480  -------------CTCCAACATCAT----CCTC-----------------------------------------  495
                         |.||.|||||.|    ||||                                         
Sbjct 1111  GGCAGTGGGAGGACGCCCACATCCTGCCCCCTCAGCCCCTCTCTGACACCCCAGGGTGGCCCTGAATCCAGGGG  1184

Query  496  ---------------------ATCA----------------------------------GCAG-----------  503
                                 ||||                                  ||||           
Sbjct 1185  CCCTAGGAGCCCAGCTTTAGAATCACCGCGCTGGGTACTCGATGGAGCTTGTCTCTGATGCAGAACACTCCTAG  1258

Query  504  ------------------------------TGAC-----------------------CACTG------------  512
                                          ||||                       |||||            
Sbjct 1259  CATTCTCTCTCAGGGCTCTTTTCATTTGAATGACCTAGAGGATTGAGCTCATGTAGGCACTGAAGGCTTCCACC  1332

Query  513  -----CAAAC---------------------------------------------------------------T  518
                 ||.||                                                               |
Sbjct 1333  TCTCCCATACCCGCAAGGCCGATCTGCCTTCAGCTCCCAGCAAGTGTGGGGCAGCGCGGGCCACAGAGTAGGGT  1406

Query  519  GCAGG---------------------------------------------------------------------  523
            |||||                                                                     
Sbjct 1407  GCAGGGATGGGGCCCCTGCAGCACCCAGGGTCTCTGGTATGGAGACAGCAGTGTGGAGTCTGGAAACTCAGAGT  1480

Query  524  ------------------------------------------------------------ACCTGAG-------  530
                                                                        .||||||       
Sbjct 1481  CCTTCTGGCTGCCGCCGCGGCTTTACCATCTGGAGAGCCACCACGCTGAAGCCTCCTCCACCCTGAGCGCTTGG  1554

Query  531  -----TTC----------CAATGTGCTAATGACAG---AC----------------------------------  552
                 |||          |||..||| ||.||.||   ||                                  
Sbjct 1555  CTGGCTTCAGGCCTGTCTCAAGATGC-AAGGAGAGGATACACCACCATCCTGCTGGCTGCTCTGAGTGTCACCC  1627

Query  553  -----AAAGC--CAAATG-----------------------------------------------GAATATTC-  571
                 |||||  ||.|.|                                               ||||.|.| 
Sbjct 1628  CCCTGAAAGCAGCACAGGGTGCCCCTCCCATCCTGGCACCCCCTACTTCTCCCCCAGTGGATGCAGAATGTGCT  1701

Query  572  -------GTGC-GGA------GGA----------------------------AGACCCCTTTCGTAAGTCCTGG  603
                   |||| |||      |||                            ||||||||||||||||||||||
Sbjct 1702  GGGCCAGGTGCTGGACGCGCTGGAATACCTGCACCATTTGGACATCATCCACAGACCCCTTTCGTAAGTCCTGG  1775

Query  604  ATGGCCCCTGAAGCCCTCAACTTCTCCTTCAGCCAGAAATCAGACATCTGGTCCCTGGGCTGCATCATTCTGGA  677
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1776  ATGGCCCCTGAAGCCCTCAACTTCTCCTTCAGCCAGAAATCAGACATCTGGTCCCTGGGCTGCATCATTCTGGA  1849

Query  678  CATGACCAGCTGCTCCTTCATGGATGGCACAGAAGCCATGCATCTGCGGAAGTCCCTCCGCCAGAGCCCAGGCA  751
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1850  CATGACCAGCTGCTCCTTCATGGATGGCACAGAAGCCATGCATCTGCGGAAGTCCCTCCGCCAGAGCCCAGGCA  1923

Query  752  GCCTGAAGGCCGTCCTGAAGACAATGGAGGAGAAGCAGATCCCGGATGTGGAAACCTTCAGGAATCTTCTGCCC  825
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1924  GCCTGAAGGCCGTCCTGAAGACAATGGAGGAGAAGCAGATCCCGGATGTGGAAACCTTCAGGAATCTTCTGCCC  1997

Query  826  TTGATGCTCCAGATCGACCCCTCGGATCGAATAACGATAAAGGACGTGGTGCACATCACCTTCTTGAGAGGCTC  899
            |||||||||||||||||||||||||||||||||||||||||                                 
Sbjct 1998  TTGATGCTCCAGATCGACCCCTCGGATCGAATAACGATAAA---------------------------------  2038

Query  900  CTTCAAGTCCTCGTGCGTCTCTCTGACCCTGCACCGGCAGATGGTGCCTGCGTCCATCACCGACATGCTGTTAG  973
                                                                                      
Sbjct 2039  --------------------------------------------------------------------------  2038

Query  974  AAGGCAACGTGGCCAGCATTTTAGAGGTCATGCAGAAATTCTCTGGCTGGCCCGAAGTCCAGCTCAGGGCCATG  1047
                                                                                      
Sbjct 2039  --------------------------------------------------------------------------  2038

Query 1048  AAGAGGCTTCTGAAAATGCCTGCAGATCAGCTAGGTCTGCCGTGGCCCCCGGAGCTGGTGGAGGTGGTGGTCAC  1121
                                              ||||||||||||||||||||||||||||||||||||||||
Sbjct 2039  ----------------------------------GTCTGCCGTGGCCCCCGGAGCTGGTGGAGGTGGTGGTCAC  2078

Query 1122  GACCATGGAGCTACATGACAGGGTCCTCGATGTCCAGCTGTGTGCCTGCTCCCTGCTGCTGCACCTCCTGGGCC  1195
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2079  GACCATGGAGCTACATGACAGGGTCCTCGATGTCCAGCTGTGTGCCTGCTCCCTGCTGCTGCACCTCCTGGGCC  2152

Query 1196  AAGCGCTGGTGCACCACCCGGAAGCCAAGGCTCCCTGCAACCAAGCCATCACCTCCACCCTGCTGAGTGCTCTT  1269
            ||                                                                        
Sbjct 2153  AA------------------------------------------------------------------------  2154

Query 1270  CAGAGCCACCCCGAGGAGGAGCCACTTCTTGTCATGGTCTACAGCCTGCTAGCCATCACCACAACCCAGGAGTC  1343
                                                                                      
Sbjct 2155  --------------------------------------------------------------------------  2154

Query 1344  AGAGTCACTGTCAGAGGAGCTGCAGAACGCTGGGCTGCTGGAGCACATCCTGGAGCACCTCAACAGCTCCCTCG  1417
                                                                                      
Sbjct 2155  --------------------------------------------------------------------------  2154

Query 1418  AAAGCAGGGACGTCTGCGCCAGCGGCCTGGGCCTGCTCTGGGCCCTCCTGCTGGACGGTATCATTGTGAACAAG  1491
                                                                    ||||||||||||||||||
Sbjct 2155  --------------------------------------------------------GGTATCATTGTGAACAAG  2172

Query 1492  GCCCCCTTGGAGAAGGTCCCGGACCTCATCAGCCAGGTGTTGGCCACCTACCCTGCGGATGGGGAAATGGCAGA  1565
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2173  GCCCCCTTGGAGAAGGTCCCGGACCTCATCAGCCAGGTGTTGGCCACCTACCCTGCGGATGGGGAAATGGCAGA  2246

Query 1566  AGCCAGCTGCGGAGTCTTCTGGCTGCTGTCCCTGCTGGGCTGCATCAAGGAGCAGCAGTTTGAACAAGTGGTGG  1639
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2247  AGCCAGCTGCGGAGTCTTCTGGCTGCTGTCCCTGCTGGGCTGCATCAAGGAGCAGCAGTTTGAACAAGTGGTGG  2320

Query 1640  CGCTGCTCCTGCAAAGCATCCGGCTGTGCCAGGACAGAGCCCTGCTGGTGAACAATGCCTACCGGGGACTGGCC  1713
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2321  CGCTGCTCCTGCAAAGCATCCGGCTGTGCCAGGACAGAGCCCTGCTGGTGAACAATGCCTACCGGGGACTGGCC  2394

Query 1714  AGCCTGGTGAAGGTGTCAGAGCTGGCGGCCTTCAAGGTGGTGGTGCAGGAGGAGGGCGGCAGTGGCCTCAGCCT  1787
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2395  AGCCTGGTGAAGGTGTCAGAGCTGGCGGCCTTCAAGGTGGTGGTGCAGGAGGAGGGCGGCAGTGGCCTCAGCCT  2468

Query 1788  CATCAAGGAGACCTACCAGCTCCACAGGGACGACCCGGAGGTGGTGGAGAACGTGGGCATGCTGCTGGTCCACC  1861
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2469  CATCAAGGAGACCTACCAGCTCCACAGGGACGACCCGGAGGTGGTGGAGAACGTGGGCATGCTGCTGGTCCACC  2542

Query 1862  TGGCTTCCTATGAGGAGATCCTGCCGGAGCTGGTGTCCAGTAGTATGAAGGCCCTGCTCCAGGAGATCAAGGAG  1935
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2543  TGGCTTCCTATGAGGAGATCCTGCCGGAGCTGGTGTCCAGTAGTATGAAGGCCCTGCTCCAGGAGATCAAGGAG  2616

Query 1936  CGCTTCACCTCCAGCCTGGTGAGTGACAGCAGCGCCTTCAGCAAACCAGGCCTCCCTCCAGGTGGAAGCCCCCA  2009
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2617  CGCTTCACCTCCAGCCTGGTGAGTGACAGCAGCGCCTTCAGCAAACCAGGCCTCCCTCCAGGTGGAAGCCCCCA  2690

Query 2010  GCTGGGGTGCACCACGTCTGGGGGACTGGAA-------------------------------------------  2040
            |||||||||||||||||||||||||||||||                                           
Sbjct 2691  GCTGGGGTGCACCACGTCTGGGGGACTGGAATAGATGTTTGTATGGAACTGACCTTGATCTCCACGTGTATAGT  2764

Query 2041  --------------------------------------------------------------------------  2040
                                                                                      
Sbjct 2765  TTTCAAGACTGCTCTCCTGCCTGCCTATTATCCCATCTCTATGACTGGGCCAAAATCAATCTTAAACGGGAGGG  2838

Query 2041  --------------------------------------------------------------------------  2040
                                                                                      
Sbjct 2839  GTAATCAGACCTCTCCAAAGAGTTTCCTGTCCATGACTGCTGGATTGAGTCACATGAGTAACTGCTCCTGGACC  2912

Query 2041  --------------------------------------------------------------------------  2040
                                                                                      
Sbjct 2913  CGGGGACTGTCCACGAAAACTGACTTGCCTGCTTCCTCCTTCCAGGAACTGGTTTCTTGCGCGGAAAAAGTGCT  2986

Query 2041  --------------------------------------------------------------------------  2040
                                                                                      
Sbjct 2987  CTTGAGGCTGGAGGCAGCCACCTCTCCCAGCCCACTGGGTGGGGAAGCAGCTCAGCCCTGATGCGGGGGAGAAG  3060

Query 2041  --------------------------------------------------------------------------  2040
                                                                                      
Sbjct 3061  ACAGATACCCCACAGGCCCCTCCCTCCACGTGTGCCCTCTCCCTGTCCTTCCTTTCCATGGGCCACTGTTTCCC  3134

Query 2041  --------------------------------------------------------------------------  2040
                                                                                      
Sbjct 3135  TTGGGGTGGGGGGAAGGGTCATCCAGCACCAGAATGCGCATCTCACACTCCTCTTAGGTGACTAATAAAGAGGC  3208

Query 2041  --------------------------------------------------------------------------  2040
                                                                                      
Sbjct 3209  CCAAGGCCAGTTTCTGCCTTAATCATTTCTGGCAAGAGGCTGTGACTGGCCAGTGGGATACTTAATTCTGCAGT  3282

Query 2041  --------------------------------------------------------------------------  2040
                                                                                      
Sbjct 3283  CTCTATAGACCTCGCCCCTGGACAGAGCAGTCCTTCCAGACCATTCTAGATGAGAGTCAACACTGAGCCTCCAC  3356

Query 2041  -------------------------------------------  2040
                                                       
Sbjct 3357  AGGCTCCATTCCAAGTAAACATCTGCATTTATTTTAAATCGCA  3399