Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_00688
- Subject:
- NM_001040664.3
- Aligned Length:
- 2422
- Identities:
- 594
- Gaps:
- 1786
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGGACAGTCAGGGAGGTCCCGGCACCAGAAGCGCGCCCGCGCCCAGGCGCAGCTCCGCAACCTCGAGGCCTA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGCCGCGAACCCGCACTCGTTCGTGTTCACGCGAGGCTGCACGGGTCGCAACATCCGGCAGCTCAGCCTGGACG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TGCGGCGGGTCATGGAGCCGCTCACTGCCAGCCGTCTGCAGGTTCGTAAGAAGAACTCGCTGAAGGACTGCGTG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCAGTGGCTGGGCCCCTCGGGGTCACACACTTTCTGATCCTGAGCAAAACAGAGACCAATGTCTACTTTAAGCT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GATGCGCCTCCCAGGAGGCCCCACCTTGACCTTCCAGGTCAAGAAGTACTCGCTGGTGCGTGATGTGGTCTCCT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CACTGCGCCGGCACCGCATGCACGAGCAGCAGTTTGCCCACCCACCCCTCCTGGTACTCAACAGCTTTGGCCCC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CATGGTATGCATGTGAAGCTCATGGCCACCATGTTCCAGAACCTGTTCCCCTCCATCAACGTGCACAAGGTGAA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CCTGAACACCATCAAGCGCTGCCTCCTCATCGACTACAACCCCGACTCCCAGGAGCTGGACTTCCGCCACTATA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GCATCAAAGTTGTTCCTGTGGGCGCGAGTCGCGGGATGAAGAAGCTGCTCCAGGAGAAGTTCCCCAACATGAGC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CGCCTGCAGGACATCAGCGAGCTGCTGGCCACGGGCGCGGGGCTGTCGGAGAGCGAGGCAGAGCCTGACGGCGA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CCACAACATCACAGAGCTGCCTCAGGCTGTCGCTGGCCGTGGCAACATGCGGGCCCAGCAGAGTGCAGTGCGGC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TCACCGAGATCGGCCCGCGGATGACACTGCAGCTCATCAAGGTCCAGGAGGGCGTCGGGGAGGGCAAAGTGATG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TTCCACAGTTTTGTGAGCAAGACGGAGGAGGAGCTGCAGGCCATCCTGGAAGCCAAGGAGAAGAAGCTGCGGCT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GAAGGCGCAGAGGCAGGCCCAGCAGGCCCAGAATGTGCAGCGCAAGCAGGAGCAGCGGGAGGCCCACAGAAAGA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AGAGCCTGGAGGGCATGAAGAAGGCACGGGTCGGGGGTAGTGATGAAGAGGCCTCTGGGATCCCTTCAAGGACG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GCGAGCCTGGAGTTGGGTGAGGACGATGATGAACAGGAAGATGATGACATCGAGTATTTCTGCCAGGCGGTGGG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CGAGGCGCCCAGTGAGGACCTGTTCCCCGAGGCCAAGCAGAAACGGCTTGCCAAGTCTCCAGGGCGGAAGCGGA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 AGCGGTGGGAAATGGATCGAGGTGCCAAGTCCTGCCCTGCCAACTTCTTGGCAGCTGCCGACGACAAACTCAGT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GGGTTCCAGGGGGACTTCCTGTGGCCCATACTGGTGGTTGAGTTCCTGGTGGCCGTGGCCAGCAATGGCCTGGC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CCTGTACCGCTTCAGCATCCGGAAGCAGCGCCCATGGCACCCCGCCGTGGTCTTCTCTGTCCAGCTGGCAGTCA 1480
Query 1 ---------------------------------------------------------------------AT--G 3
|| |
Sbjct 1481 GCGACCTGCTCTGCGCCCTGACGCTGCCCCCGCTGGCCGCCTACCTCTATCCCCCCAAGCACTGGCGCTATGGG 1554
Query 4 GAAGCC----ATCGCCAAATATG----------ACTTCA-----AAGCTACT--GCAGACG-----------AC 45
||.||| ..|||| || .||||| ||.||.|| |||| || ||
Sbjct 1555 GAGGCCGCGTGCCGCC-----TGGAGCGCTTCCTCTTCACCTGCAACCTGCTGGGCAG-CGTCATCTTCATCAC 1622
Query 46 GAGC-TGAGCTTCAAAAG------GGGGGACATCCTCAAGGT----------TTTGAACGAAG---AATGTGAT 99
..|| |.|||.||||..| ||| |||| || ||.|..||||| ..||.||.
Sbjct 1623 CTGCATCAGCCTCAACCGCTACCTGGG---CATC------GTGCACCCCTTCTTCGCCCGAAGCCACCTGCGAC 1687
Query 100 C--AGAA---CTGGTACAAGGC----AGAGCTTAATGGAAAAGACGGCT---------------------TCAT 143
| ||.| ||| ||| ||.||| |.||||| .|||
Sbjct 1688 CCAAGCACGCCTG------GGCCGTGAGCGCT----------GCCGGCTGGGTCCTGGCCGCCCTGCTGGCCAT 1745
Query 144 TCCCAAGAACT-----------ACATAGAAATGAAACCACATCCGTGGTTTTTTGGCAA-------------AA 193
.|||| .||| ||.| ||| ||..||.||.|.|.|| ...||||| |.
Sbjct 1746 GCCCA--CACTCAGCTTCTCCCACCT-GAA--GAGGCCGCAGCAGGGG---GCGGGCAACTGCAGCGTGGCCAG 1811
Query 194 TCCCCAGAGC------CAAG------------GCAGA-------------------AGA-----------AATG 219
.|||.|| || |||| ||||| ||| ..||
Sbjct 1812 GCCCGAG-GCCTGCATCAAGTGTCTGGGGACAGCAGACCACGGGCTGGCGGCCTACAGAGCGTATAGCCTGGTG 1884
Query 220 CT-----------------------------------------TAGCATACGGCGCCCTCGGGCGGGCCGTGCT 252
|| .|||.||||||||||||||||||||||||||
Sbjct 1885 CTGGCGGGGTTGGGCTGCGGCCTGCCGCTGCTGCTCACGCTGGCAGCCTACGGCGCCCTCGGGCGGGCCGTGCT 1958
Query 253 ACGCAGCCCAGGCATGACTGTGGCCGAGAAGCTGCGTGTGGCAGCGTTGGTGGCCAGTGGTGTGGCCCTCTACG 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1959 ACGCAGCCCAGGCATGACTGTGGCCGAGAAGCTGCGTGTGGCAGCGTTGGTGGCCAGTGGTGTGGCCCTCTACG 2032
Query 327 CCAGCTCCTATGTGCCCTACCACATCATGCGGGTGCTCAACGTGGATGCTCGGCGGCGCTGGAGCACCCGCTGC 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2033 CCAGCTCCTATGTGCCCTACCACATCATGCGGGTGCTCAACGTGGATGCTCGGCGGCGCTGGAGCACCCGCTGC 2106
Query 401 CCGAGCTTTGCAGACATAGCCCAGGCCACAGCAGCCCTGGAGCTGGGGCCCTACGTGGGCTACCAGGTGATGCG 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2107 CCGAGCTTTGCAGACATAGCCCAGGCCACAGCAGCCCTGGAGCTGGGGCCCTACGTGGGCTACCAGGTGATGCG 2180
Query 475 GGGCCTCATGCCCCTGGCCTTCTGTGTCCACCCTCTACTCTACATGGCCGCAGTGCCCAGCCTGGGCTGCTGCT 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2181 GGGCCTCATGCCCCTGGCCTTCTGTGTCCACCCTCTACTCTACATGGCCGCAGTGCCCAGCCTGGGCTGCTGCT 2254
Query 549 GCCGACACTGCCCCGGCTACAGGGACAGCTGGAACCCAGAGGACGCCAAGAGCACTGGCCAAGCCCTGCCCCTC 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2255 GCCGACACTGCCCCGGCTACAGGGACAGCTGGAACCCAGAGGACGCCAAGAGCACTGGCCAAGCCCTGCCCCTC 2328
Query 623 AATGCCACAGCCGCCCCTAAACCGTCAGAGCCCCAGTCCCGTGAGCTGAGCCAA 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2329 AATGCCACAGCCGCCCCTAAACCGTCAGAGCCCCAGTCCCGTGAGCTGAGCCAA 2382
