Nucleotide Global Alignment

Description

Query:
ccsbBroad304_00841
Subject:
NM_001190720.2
Aligned Length:
2348
Identities:
1143
Gaps:
1174

Alignment

Query    1  -------------------ATGAGC--------TGG-----------TCACCTTCCCTGACAACGCAGACATGT  36
                               || |||        |||           .|.|||||||      |||        
Sbjct    1  ATGTTTTCAGGGGGGTGTCAT-AGCCCCGGGTTTGGCCGCCCCAGCCCCGCCTTCCC------CGC--------  59

Query   37  GGGGCCTGGGAAATGAAAGAGC---------GCCTTGGGACAGGGGGATTTGGAAATGTCAT-CCGATGGCACA  100
                ||.|||        ||||         |||..|.|.|                  |.| ||||       
Sbjct   60  ----CCCGGG--------GAGCCCGCCCCCTGCCCCGCGTC------------------CCTGCCGA-------  96

Query  101  ATCAGGAAACAGGTGAGCAGATTGCCATCAAGCAGTGCCGGCAGGAGCTCAGCCCCCGGAACCGAGAGCGGTGG  174
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   97  --CAGGAAACAGGTGAGCAGATTGCCATCAAGCAGTGCCGGCAGGAGCTCAGCCCCCGGAACCGAGAGCGGTGG  168

Query  175  TGCCTGGAGATCCAGATCATGAGAAGGCTGACCCACCCCAATGTGGTGGCTGCCCGAGATGTCCCTGAGGGGAT  248
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  169  TGCCTGGAGATCCAGATCATGAGAAGGCTGACCCACCCCAATGTGGTGGCTGCCCGAGATGTCCCTGAGGGGAT  242

Query  249  GCAGAACTTGGCGCCCAATGACCTGCCCCTGCTGGCCATGGAGTACTGCCAAGGAGGAGATCTCCGGAAGTACC  322
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  243  GCAGAACTTGGCGCCCAATGACCTGCCCCTGCTGGCCATGGAGTACTGCCAAGGAGGAGATCTCCGGAAGTACC  316

Query  323  TGAACCAGTTTGAGAACTGCTGTGGTCTGCGGGAAGGTGCCATCCTCACCTTGCTGAGTGACATTGCCTCTGCG  396
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  317  TGAACCAGTTTGAGAACTGCTGTGGTCTGCGGGAAGGTGCCATCCTCACCTTGCTGAGTGACATTGCCTCTGCG  390

Query  397  CTTAGATACCTTCATGAAAACAGAATCATCCATCGGGATCTAAAGCCAGAAAACATCGTCCTGCAGCAAGGAGA  470
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  391  CTTAGATACCTTCATGAAAACAGAATCATCCATCGGGATCTAAAGCCAGAAAACATCGTCCTGCAGCAAGGAGA  464

Query  471  ACAGAGGTTAATACACAAAATTATTGACCTAGGATATGCCAAGGAGCTGGATCAGGGCAGTCTTTGCACATCAT  544
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  465  ACAGAGGTTAATACACAAAATTATTGACCTAGGATATGCCAAGGAGCTGGATCAGGGCAGTCTTTGCACATCAT  538

Query  545  TCGTGGGGACCCTGCAGTACCTGGCCCCAGAGCTACTGGAGCAGCAGAAGTACACAGTGACCGTCGACTACTGG  618
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  539  TCGTGGGGACCCTGCAGTACCTGGCCCCAGAGCTACTGGAGCAGCAGAAGTACACAGTGACCGTCGACTACTGG  612

Query  619  AGCTTCGGCACCCTGGCCTTTGAGTGCATCACGGGCTTCCGGCCCTTCCTCCCCAACTGGCAGCCCGTGCAGTG  692
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  613  AGCTTCGGCACCCTGGCCTTTGAGTGCATCACGGGCTTCCGGCCCTTCCTCCCCAACTGGCAGCCCGTGCAGTG  686

Query  693  GCATTCAAAAGTGCGGCAGAAGAGTGAGGTGGACATTGTTGTTAGCGAAGACTTGAATGGAACGGTGAAGTTTT  766
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  687  GCATTCAAAAGTGCGGCAGAAGAGTGAGGTGGACATTGTTGTTAGCGAAGACTTGAATGGAACGGTGAAGTTTT  760

Query  767  CAAGCTCTTTACCCTACCCCAATAATCTTAACAGTGTCCTGGCTGAGCGACTGGAGAAGTGGCTGCAACTGATG  840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  761  CAAGCTCTTTACCCTACCCCAATAATCTTAACAGTGTCCTGGCTGAGCGACTGGAGAAGTGGCTGCAACTGATG  834

Query  841  CTGATGTGGCACCCCCGACAGAGGGGCACGGATCCCACGTATGGGCCCAATGGCTGCTTCAAGGCCCTGGATGA  914
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  835  CTGATGTGGCACCCCCGACAGAGGGGCACGGATCCCACGTATGGGCCCAATGGCTGCTTCAAGGCCCTGGATGA  908

Query  915  CATCTTAAACTTAAAGCTGGTTCATATCTTGAACATGGTCACGGGCACCATCCACACCTACCCTGTGACAGAGG  988
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  909  CATCTTAAACTTAAAGCTGGTTCATATCTTGAACATGGTCACGGGCACCATCCACACCTACCCTGTGACAGAGG  982

Query  989  ATGAGAGTCTGCAGAGCTTGAAGGCCAGAATCCAACAGGACACGGGCATCCCAGAGGAGGACCAGGAGCTGCTG  1062
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  983  ATGAGAGTCTGCAGAGCTTGAAGGCCAGAATCCAACAGGACACGGGCATCCCAGAGGAGGACCAGGAGCTGCTG  1056

Query 1063  CAGGAAGCGGGCCTGGCGTTGATCCCCGATAAGCCTGCCACTCAGTGTATTTCAGACGGCAAG----GTGAGCC  1132
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    .||||  
Sbjct 1057  CAGGAAGCGGGCCTGGCGTTGATCCCCGATAAGCCTGCCACTCAGTGTATTTCAGACGGCAAGTTAAATGAG--  1128

Query 1133  CTGGCTTCGTACACAC----------CATCCTGTTTACCTTGGCTGTGCCTCCTGGGAAACTCAAC----ACAC  1192
              |||      |||||          .|||.|||||   ||..||.||.|..| .|.|||.|||.|    |.||
Sbjct 1129  --GGC------CACACATTGGACATGGATCTTGTTT---TTCTCTTTGACAAC-AGTAAAATCACCTATGAGAC  1190

Query 1193  TTTCAGATTT-----------CAATTCTGCTT-----TGTCA--TGTAGTCTGTTAATCACACAGTGC------  1242
              ||||||.|           |||     |.|     |||||  ||||..||     |||   ||.||      
Sbjct 1191  --TCAGATCTCCCCACGGCCCCAA-----CCTGAAAGTGTCAGCTGTATCCT-----TCA---AGAGCCCAAGA  1249

Query 1243  GGATACCTGGCTGGTTTT--------------------------------------------------------  1260
            ||| |.||.||  .||.|                                                        
Sbjct 1250  GGA-ATCTCGC--CTTCTTCCAGCTGAGGAAGGTGTGGGGCCAGGTCTGGCACAGCATCCAGACCCTGAAGGAA  1320

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1321  GATTGCAACCGGCTGCAGCAGGGACAGCGAGCCGCCATGATGAATCTCCTCCGAAACAACAGCTGCCTCTCCAA  1394

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1395  AATGAAGAATTCCATGGCTTCCATGTCTCAGCAGCTCAAGGCCAAGTTGGATTTCTTCAAAACCAGCATCCAGA  1468

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1469  TTGACCTGGAGAAGTACAGCGAGCAAACCGAGTTTGGGATCACATCAGATAAACTGCTGCTGGCCTGGAGGGAA  1542

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1543  ATGGAGCAGGCTGTGGAGCTCTGTGGGCGGGAGAACGAAGTGAAACTCCTGGTAGAACGGATGATGGCTCTGCA  1616

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1617  GACCGACATTGTGGACTTACAGAGGAGCCCCATGGGCCGGAAGCAGGGGGGAACGCTGGACGACCTAGAGGAGC  1690

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1691  AAGCAAGGGAGCTGTACAGGAGACTAAGGGAAAAACCTCGAGACCAGCGAACTGAGGGTGACAGTCAGGAAATG  1764

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1765  GTACGGCTGCTGCTTCAGGCAATTCAGAGCTTCGAGAAGAAAGTGCGAGTGATCTATACGCAGCTCAGTAAAAC  1838

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1839  TGTGGTTTGCAAGCAGAAGGCGCTGGAACTGTTGCCCAAGGTGGAAGAGGTGGTGAGCTTAATGAATGAGGATG  1912

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1913  AGAAGACTGTTGTCCGGCTGCAGGAGAAGCGGCAGAAGGAGCTCTGGAATCTCCTGAAGATTGCTTGTAGCAAG  1986

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1987  GTCCGTGGTCCTGTCAGTGGAAGCCCGGATAGCATGAATGCCTCTCGACTTAGCCAGCCTGGGCAGCTGATGTC  2060

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2061  TCAGCCCTCCACGGCCTCCAACAGCTTACCTGAGCCAGCCAAGAAGAGTGAAGAACTGGTGGCTGAAGCACATA  2134

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2135  ACCTCTGCACCCTGCTAGAAAATGCCATACAGGACACTGTGAGGGAACAAGACCAGAGTTTCACGGCCCTAGAC  2208

Query 1261  ------------------------------------------------------  1260
                                                                  
Sbjct 2209  TGGAGCTGGTTACAGACGGAAGAAGAAGAGCACAGCTGCCTGGAGCAGGCCTCA  2262

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