Nucleotide Global Alignment

Description

• Query: ccsbBroad304_02629
• Subject: XR_001784631.1
• Aligned Length: 1925
• Identities: 1293
• Gaps: 444

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GGGAGGGTCCGGTCCGGGGGCGGGGCCAGGAGTGCGGCCTGCGCTACCTGAAGTGGAGAAGGAGGAGGAGGGCA  74

Query    1  ------------------------------------------------------------ATGGCTGTAGAGGA  14
                                                                        ||||||||.|||||
Sbjct   75  AGAGGCAGGCGCGTGGATCGGCGGTTCATTACAGCATCAAAATTAGGAAAATAATTAGGAATGGCTGTGGAGGA  148

Query   15  ACTTCAGTCTATAATAAAGAGATGTCAAATCCTAGAAGAGCAAGACTTTAAAGAAGAGGATTTTGGCCTATTTC  88
            |||||||...||||||||.|||||||||||||||||||||||.||.|||||||||||.|||||||||||.||||
Sbjct  149  ACTTCAGAGCATAATAAAAAGATGTCAAATCCTAGAAGAGCATGATTTTAAAGAAGAAGATTTTGGCCTCTTTC  222

Query   89  AGTTAGCTGGGCAAAGATGCATAGAAGAAGGGCACACAGACCAGCTATTAGAAATTATTCAAAATGAAAAGAAT  162
            |||||||.||.|||||||||||.|||||.||..|.|.|.|||||||..||||.|||||||||.||||||||||.
Sbjct  223  AGTTAGCAGGTCAAAGATGCATTGAAGATGGTTATATAAACCAGCTGCTAGAGATTATTCAAGATGAAAAGAAC  296

Query  163  AAGGTCATCATCAAGAATATGGGCTGGAATCTCGTTGGTCCTGTTGTTCGATGCCTTTT---GTGTAAAGATAA  233
            |||..||||||.|||..||||||.||||||||.||||||||.||||||||||||||..|   |.|.|.||   |
Sbjct  297  AAGACCATCATTAAGTCTATGGGGTGGAATCTTGTTGGTCCAGTTGTTCGATGCCTCCTGAGGGGCAGAG---A  367

Query  234  AGAGGATAGTAAAAGAAAAGTTTATTTTTTGATCTTTGATTTATTGGTAAAGTTATGCAATCCAAAGGAATTAT  307
            ||||||   |||||||.|||..|.||||.||||.||||||||..||||.||||||||.||||||||||||||.|
Sbjct  368  AGAGGA---TAAAAGAGAAGAGTGTTTTCTGATATTTGATTTGCTGGTGAAGTTATGTAATCCAAAGGAATTGT  438

Query  308  TGTTGGGTTTGCTTGAACTGATTGAAGAGCCCTCTGGAAAACAGATATCCCAAAGTATTCTTCTTTTGCTTCAG  381
            |||||||||||||||||||.||||||||||||||.|||||||||||.|||||||.||||||||||||.||.||.
Sbjct  439  TGTTGGGTTTGCTTGAACTCATTGAAGAGCCCTCCGGAAAACAGATTTCCCAAATTATTCTTCTTTTACTGCAA  512

Query  382  CCATTACAAACAGTGATTCAGAAACTTC---ATAACAAGGCATATTCAATTGGATTAGCATTGTCTACCCTTTG  452
            ||||||||||||||.|||||||||||||   |.|||||||||||.||..|||||.||||||||||.||.|||||
Sbjct  513  CCATTACAAACAGTTATTCAGAAACTTCCTAACAACAAGGCATACTCCGTTGGACTAGCATTGTCAACACTTTG  586

Query  453  GAATCAGCTATCTCTTCTTCCTGTTCCATACTCAAAAGAACAAATACAAATGGATGACTATGGCCTTTGTCAGT  526
            ||.||||||.||||||||||||||||||.|||||.||||||||||.||....|||||.||||||||.|||||||
Sbjct  587  GAGTCAGCTGTCTCTTCTTCCTGTTCCACACTCAGAAGAACAAATTCAGGCAGATGATTATGGCCTCTGTCAGT  660

Query  527  GTTGCAAGGCCTTAATAGAGTTCACTAAGCCTTTTGTGGAAGAAGTCAT---TGATAACAAAGAAAACTCACTG  597
            ||||.||||||||.|||||||||||.||.|||||||||||||||||.||   ||||   |||||||||..|   
Sbjct  661  GTTGTAAGGCCTTGATAGAGTTCACGAAACCTTTTGTGGAAGAAGTAATAAGTGAT---AAAGAAAACAAA---  728

Query  598  GAAAATGAAAAGTTAAAGGATGAATTACTGAAATTTTGTTTCAAAAGCTTGAAATGCCCTTTGCTGACAGCACA  671
            |||||||.|||..||||.|||||||||||||||||||||||||||.||||||||||||||||||||||||||||
Sbjct  729  GAAAATGCAAAACTAAAAGATGAATTACTGAAATTTTGTTTCAAAGGCTTGAAATGCCCTTTGCTGACAGCACA  802

Query  672  ATTCTTTGAACAGTCTGAAGAAGGTGGAAATGATCCTTTCAGGTATTTTGCATCAGAAATAATAGGTTTTTTAT  745
            ||||.|.||||||||.|||||.|.|||||||||.|||||..|||.|||||||||.|||||||||||.|||||||
Sbjct  803  ATTCCTCGAACAGTCAGAAGACGTTGGAAATGACCCTTTTCGGTGTTTTGCATCTGAAATAATAGGATTTTTAT  876

Query  746  CAGCAATTGGACACCCTTTCCCCAAAATGATTTTTAATCATGGAAGGAAAAAGAGAACTTGGAATTACCTTGAA  819
            ||..|||||||||||||.|||||.||||.|||.|||||||||||||||||||.||.||||||.|||||||||||
Sbjct  877  CAAAAATTGGACACCCTGTCCCCCAAATTATTCTTAATCATGGAAGGAAAAAAAGGACTTGGGATTACCTTGAA  950

Query  820  TTTGAAGAAGAAGAAAATAAACAGTTAGCAGACTCAATGGCTTCTCTGGCATATCTAGTATTTGTACAGGGCAT  893
            |||||||||||||||.|.|||||..|.|||||.||..|||||||||||.||||||||||||||||.||||||||
Sbjct  951  TTTGAAGAAGAAGAAGACAAACAACTGGCAGAGTCTGTGGCTTCTCTGACATATCTAGTATTTGTTCAGGGCAT  1024

Query  894  CCATATTGATCAGCTTCCAATGGTCTTAAGCCCATTGTACCTTTTGCAGTTTAATATGGGGCACATTGAAGTCT  967
            |..||||||||||||.||.||||||||||||||||.|||||||.|||||||.||.||||.|||.||||||||.|
Sbjct 1025  CGGTATTGATCAGCTGCCCATGGTCTTAAGCCCATCGTACCTTCTGCAGTTGAACATGGAGCATATTGAAGTGT  1098

Query  968  TTTTGCAAAGAACAGAAGAGTCTGTTATCTCCAAAGGATTGGAGCTGCTGGAGAATAGTTTATTGAGAATAGAA  1041
            ||.||||||||||     |||||.||..|||||||||||||||.||.|||||||.|||.|||||||||.|||||
Sbjct 1099  TTCTGCAAAGAAC-----AGTCTATTTACTCCAAAGGATTGGAACTTCTGGAGACTAGCTTATTGAGATTAGAA  1167

Query 1042  GACAATAGTCTACTTTACCAGTACTTAGAAATCAAGAGTTTTCTTACTGTACCTCAGGGCTTAGTGAAAGTAAT  1115
            |||||.||.|||..|||.|||||||||||||||||||||||||||.||||.||||||||||||||.|||||.||
Sbjct 1168  GACAACAGCCTATGTTATCAGTACTTAGAAATCAAGAGTTTTCTTGCTGTGCCTCAGGGCTTAGTCAAAGTTAT  1241

Query 1116  GACACTTTGCCCCATTGAGACACTGAGGAAAAAGAGTTTAGCTATGCTTCAGCTGTATATTAACAAGTTGGATT  1189
            ||||||||||||||||||||||.||||||||||..|||||.|||||||||||||||.||||.||||||||||||
Sbjct 1242  GACACTTTGCCCCATTGAGACATTGAGGAAAAAAGGTTTATCTATGCTTCAGCTGTTTATTGACAAGTTGGATT  1315

Query 1190  CACAAGGCAAATATACATTATTTAGGTGCTTATTGAATACAAGTAATCACTCAGGTGTGGAGGCTTTTATTATT  1263
            ||||||||||||||||||||||||||||||||.|.||||||||||||||||||||.|||||.||.|||.|.|||
Sbjct 1316  CACAAGGCAAATATACATTATTTAGGTGCTTACTAAATACAAGTAATCACTCAGGAGTGGAAGCCTTTGTAATT  1389

Query 1264  CAAAATATCAAAAATCAAATTGACATGTCATTAAAGAGAACACGTAACAACAAATGGTTTACAGGACCACAGTT  1337
            |||||.|||||||||||.|||||..|.|||||.||||.||||   .|.||||||||||||.|||||.|||||.|
Sbjct 1390  CAAAACATCAAAAATCAGATTGATTTATCATTTAAGAAAACA---TATAACAAATGGTTTGCAGGAGCACAGCT  1460

Query 1338  GATTTCCCTTCTTGATTTGGTACTTTTTCTCCCAGAGGGTGCAGAAACAGATTTACTGCAAAACTCAGATAGGA  1411
            |||.||.||..|.||..||||.||.|.||||||.|||||.||.||.|||||.||||||||.||||||||.||||
Sbjct 1461  GATCTCTCTGTTAGACCTGGTCCTGTCTCTCCCTGAGGGCGCTGAGACAGACTTACTGCAGAACTCAGACAGGA  1534

Query 1412  TTATGGCTTCATTAAATTTATTGAGGTATTTGGTTATCAAAGATAATGAAAATGACAATCAAACTGGATTATGG  1485
            ||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||
Sbjct 1535  TTATGGCTTCATTAAATTTATTGAGGTATTTGGTTATCAAAGATAATGAAGATGACAATCAAACTGGATTATGG  1608

Query 1486  ACAGAACTTGGAAATATTGAGAATAATTTCTTAAAGCCACTTCATATAGGACTTAATATGTCAAAAGCACATTA  1559
            ||||||||||||||.|                                                          
Sbjct 1609  ACAGAACTTGGAAAAA----------------------------------------------------------  1624

Query 1560  TGAAGCAGAAATTAAAAATAGCCAAGAGGCCCAGAAATCTAAAGATCTTTGTTCTATAACTGTAAGTGGAGAAG  1633
                                                                                      
Sbjct 1625  --------------------------------------------------------------------------  1624

Query 1634  AGATCCCTAATATGCCTCCTGAAATGCAGCTTAAGGTCCTGCATTCAGCTCTTTTCACATTTGATTTGATTGAA  1707
                                                                                      
Sbjct 1625  --------------------------------------------------------------------------  1624

Query 1708  AGTGTTCTAGCTCGAGTGGAAGAACTCATTGAAATAAAAACAAAGTCTACCTCTGAAGAAAATATTGGGATAAA  1781
                                                                                      
Sbjct 1625  --------------------------------------------------------------------------  1624

Query 1782  G  1782
             
Sbjct 1625  -  1624