Nucleotide Global Alignment

Description

Query:
ccsbBroad304_02664
Subject:
XR_002957830.1
Aligned Length:
3939
Identities:
1069
Gaps:
2829

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTGCTCACCGCCGCTTCCGGTCCGCGTGAGGTGCATTCTCGCGCCGGTGGCGAGGTTAGGGCCCGCGTTGCGAC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GTGGTGCAGCGCATATTTTCACAAGTGGGTCTCCCTTGTCCGGGACTATGGCCACCGACTCGTGGGCCCTGGCG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GTGGACGAGCAGGAAGCGGCTGTCAAGTCGATGACCAATTTGCAGATCAAGGAAGAGAAAGTCAAAGCAGATAC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CAATGGTATTATCAAAACCAGTACCACTGCCGAGAAAACAGATGAAGAGGAGAAAGAGGACAGAGCTGCCCAGT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CCTTACTCAACAAGCTGATCAGAAGCAACCTTGTTGATAACACAAACCAAGTGGAAGTCCTGCAACGGGATCCA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  AACTCCCCTCTGTACTCGGTGAAGTCGTTTGAAGAGCTTCGGCTGAAACCACAGCTTCTCCAGGGAGTCTATGC  444

Query    1  -ATGGGTTTCAATCGTCCATCCAAGATACAAGAGAACGCATTGCCACTGATGCTTGCTGAGCCCCCACAGAACT  73
             |||||.||||||||.||.|||||||||||||||||||||||.||..|||||||||||||.|||||||||||..
Sbjct  445  CATGGGCTTCAATCGACCCTCCAAGATACAAGAGAACGCATTACCCATGATGCTTGCTGAACCCCCACAGAATC  518

Query   74  TAATTGCCCAATCTCAGTCTGGTACTGGTAAAACAGCTGCCTTCGTGCTGGCCATGCTTAGCCAAGTAGAACCT  147
            |.||||||||.|||||||||||.||||||||||||||||||||.||..|.||||||||.||||.|||.||.||.
Sbjct  519  TGATTGCCCAGTCTCAGTCTGGCACTGGTAAAACAGCTGCCTTTGTCTTAGCCATGCTCAGCCGAGTGGAGCCA  592

Query  148  GCAAACAAATACCCCCAGTGTCTATGTCTCTCCCCAACGTATGAGCTCGCCCTCCAAACAGGAAAAGTGATTGA  221
            .||.|||.|||||||||||||||.||.|||||||||||.||||||||.||.||.||||||||||||||||||||
Sbjct  593  TCAGACAGATACCCCCAGTGTCTGTGCCTCTCCCCAACATATGAGCTGGCGCTTCAAACAGGAAAAGTGATTGA  666

Query  222  ACAAATGGGCAAATTTTACCCTGAACTGAAGCTAGCTTATGCTGTTCGAGGCAATAAATTGGAAAGAGGCCAGA  295
            .||.|||||||||||||||||.|||||||||||.||.|||||.|||||||||||||||||||||||||||||||
Sbjct  667  GCAGATGGGCAAATTTTACCCAGAACTGAAGCTTGCCTATGCCGTTCGAGGCAATAAATTGGAAAGAGGCCAGA  740

Query  296  AGATCAGTGAGCAGATTGTCATTGGCACCCCTGGGACTGTGCTGGACTGGTGCTCCAAGCTCAAGTTCATTGAT  369
            |||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||
Sbjct  741  AGATCAGTGAGCAGATTGTCATTGGCACCCCTGGGACCGTGCTGGACTGGTGCTCCAAGCTCAAGTTCATTGAT  814

Query  370  CCCAAGAAAATCAAGGTGTTTGTTCTGGATGAGGCTGATGTCATGATAGCCACTCAGGGCCACCAAGATCAGAG  443
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  CCCAAGAAAATCAAGGTGTTTGTTCTGGATGAGGCTGATGTCATGATAGCCACTCAGGGCCACCAAGATCAGAG  888

Query  444  CATCCGCATCCAGAGGATGCTGCCCAGGAACTGCCAGATGCTGCTTTTCTCCGCCACCTTTGAAGACTCTGTGT  517
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  CATCCGCATCCAGAGGATGCTGCCCAGGAACTGCCAGATGCTGCTTTTCTCCGCCACCTTTGAAGACTCTGTGT  962

Query  518  GGAAGTTTGCCCAGAAAGTGGTCCCAGACCCAAACGTTATCAAACTGAAGCGTGAGGAAGAGACCCTGGACACC  591
            ||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||.|||
Sbjct  963  GGAAGTTTGCCCAGAAAGTGGTCCCAGACCCAAATGTTATCAAACTGAAGCGTGAGGAAGAGACCCTGGATACC  1036

Query  592  ATCAAGCAGTACTATGTCCTGTGCAGCAGCAGAGACGAGAAGTTCCAGGCCTTGTGTAACCTCTACGGGGCCAT  665
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  ATCAAGCAGTACTATGTCCTGTGCAGCAGCAGAGACGAGAAGTTCCAGGCCTTGTGTAACCTCTACGGGGCCAT  1110

Query  666  CACCATTGCTCAAGCCATGATCTTCTGCCATACTCGCAAAACAGCTAGTTGGCTGGCAGCAGAGCTCTCAAAAG  739
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  CACCATTGCTCAAGCCATGATCTTCTGCCATACTCGCAAAACAGCTAGTTGGCTGGCAGCAGAGCTCTCAAAAG  1184

Query  740  AAGGCCACCAGGTGGCTCTGCTGAGTGGGGAGATGATGGTGGAACAGAGGGCTGCAGTGATTGAGCGCTTCCGA  813
            |||||||||||||||||||||||||||||||||||||||||||.|||||||||||.||||||||||||||||||
Sbjct 1185  AAGGCCACCAGGTGGCTCTGCTGAGTGGGGAGATGATGGTGGAGCAGAGGGCTGCGGTGATTGAGCGCTTCCGA  1258

Query  814  GAGGGCAAAGAGAAGGTTTTGGTGACCACCAACGTGTGTGCCCGC-----------------------------  858
            |||||||||||||||||||||||||||||||||||||||||||||                             
Sbjct 1259  GAGGGCAAAGAGAAGGTTTTGGTGACCACCAACGTGTGTGCCCGCGGTGAGCAGAGGACGTGTCCCACCTGGTC  1332

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 1333  TGCCAGGCTCGGGGTCCCAGGCCCAATTAGAGCCAGAAATCCTTGTATACAGGGAAGTCGGATGGTCTCAGGGA  1406

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 1407  GATGGGTGGGGTTGGTGACACTATTCCTTTCTAGGAGAGACTGTTTGGATTTCCCTGAGGTGGTAAGAACTCAC  1480

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 1481  ACATGCCAGGTGCGGTGGCTCATGCCTGCAATCCCAAGGCAGGAAAATTGCTTGAACCCTGGAGACAGAGGTTG  1554

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 1555  CAGTGAGCCGAGAATGTGCTATAGCACTCCATCCTGGGTGACAGAGTGAGACTCTGTCTCCAAAAAAAAAAAGG  1628

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 1629  AAGAGGGCAGGCCCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGAATCACCTGAGG  1702

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 1703  TCAGGAATTCGAGACCAGCCTGACCAATATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCGGGCG  1776

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 1777  TGGTGGCATGCGCCTGTAATCCCAGCTACTCAGGAGGCTGAGACAGGAGAATCGCTTGAACCCGGGAGGTGGAG  1850

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 1851  GTTACGGTGAGTGAGATCGCGCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCAAAAATAAAA  1924

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 1925  AAAGAAAGAAAGAAAAGGAACTCCCGCAGAAACCAGTAGTCCTGACTTGGTGGAAGGAAATGTACAGGCATCTG  1998

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 1999  ACTGGTAGAGAACGGAGCCTACTCTTCCAGGGGCGCCCATCTCCAGAACATTGTGTCTCCCAGAGGATTACCGA  2072

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 2073  CTGATCTCATGATTTTGTTGGCACTTGCCAAAGTTCTCTTCTTTTCCTCTGGGTTCTGTTGCCTGCCTATATGT  2146

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 2147  GTGCCCTCTCTTGTACCCAGAGTTGGCCTGTCCCAAATTCTTTCCCTCTATCCCAAAGTTGGTACGCATTGACC  2220

Query  859  ---------------------------------------------------------------------GGCAT  863
                                                                                 |||||
Sbjct 2221  TACCTATGGATGACAGTGATTTCTGTCTCCTGTCCTTAGTCCTCTCAGCCTCCAACTCTCCTTCCTGCAGGCAT  2294

Query  864  TGATGTTGAACAAGTGTCTGTCGTCATCAACTTTGATCTTCCCGTGGACAAGGACGGGAATCCTGACAATGAGA  937
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295  TGATGTTGAACAAGTGTCTGTCGTCATCAACTTTGATCTTCCCGTGGACAAGGACGGGAATCCTGACAATGAGA  2368

Query  938  CCTACCTGCACCGGATCGGGCGCACGGGCCGCTTTGGCAAGAGGGGCCTGGCAGTGAACATGGTGGACAGCAAG  1011
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369  CCTACCTGCACCGGATCGGGCGCACGGGCCGCTTTGGCAAGAGGGGCCTGGCAGTGAACATGGTGGACAGCAAG  2442

Query 1012  CACAGCATGAACATCCTGAACAGAATCCAGGAGCATTTTAATAAGAAGATAGAAAGATTGGACACAGATGATTT  1085
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443  CACAGCATGAACATCCTGAACAGAATCCAGGAGCATTTTAATAAGAAGATAGAAAGATTGGACACAGATGATTT  2516

Query 1086  GGACGAGATTGAGAAAATAGCCAAC-------------------------------------------------  1110
            |||||||||||||||||||||||||                                                 
Sbjct 2517  GGACGAGATTGAGAAAATAGCCAACTGAGAAGCTCCACCAGCCACTGATGCCAGCCCTGGCACTGCCCCTGCAC  2590

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 2591  AGGAGACAAGTGCATTTAGGGCACAGGCCCCGACATCACCCCAAGGACAACGGCAGAAGTAGAGAGAAACTACC  2664

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 2665  TACCTCACTTCAAATTATGTTTGGACTTGACAAAAATAGGTGCAAATGATGGGGGGCAATAGAAGAAAAAATTT  2738

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 2739  GCATTTTGGAAAATTGGGTCCTTTCCCCACTTTTTTAAAGCCACATTCCCCCATCTTTATAATAATCTGGTCAC  2812

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 2813  AGTGGTAGTCGCTGGCCCCAGGACCCCCTCCTGATTTTGGCTAGGCATCGTGGAACCAGCTCCAGCCCCTGAAG  2886

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 2887  AAACGATAGATGTGCAGGTTGTGCGGAAGAGGCTGAGTGGAAAATGGTGTGAGCCCCACCGCTGTGCATCGAAT  2960

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 2961  GAGGGAAGTGGCAGCAGAGAGGCCAGAGCTGCCCCCTCTCTGTCTCTTCAATGGACCCTTCACAAGTGTTTCTC  3034

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 3035  CTGCCCTTGGGGCTGTCTTCCTTCTCCTGAAATCCAGAGACTTTCTTGCTCATCCCTTCTCCCTTTCACTTCTG  3108

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 3109  TTCTCTGCTGCAGAAAGCAGACTTGCATATCCCTGATGAGCAGCTCGGCTACTTTTGTAAACTTCAGATTTGGA  3182

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 3183  GAGAAACACGAAAGTCTGAATCCTGACCCCTTGAGAGAGAGTGATCTGGCGAGGGCCGATGAAGGGGCTGGGCC  3256

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 3257  TGGTCTTGCCTTCTCTTCTCTCGGTTGCTCCCTCTGCCTAGGCCCCTGGTACTCAGTCACGGCAGCCAGGAGAC  3330

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 3331  CCCAGGTGAGTTTCTGAGCGCATACGTAGTTGGTTCTTACCCCCAGGTGTCACACGGGGCCGAGAGCTGAGCAA  3404

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 3405  GAATTTGGAATGGAAGTTATGACCAAGGGAATTATGCTGTTCATTTATAATAGTGGACATTATGGAGAGCTCTG  3478

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 3479  ATTCCTACATAATATGAATAAGGATGGATAGGCCGGGCGTGGTGGCTCATGCCTATAATCCCAGCACGTTGGGA  3552

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 3553  GGCTGAGGCGGGCGGATCGGTTGAGCTCAGGCGTTCGGGACCAGCCTGGCCAACATGATGAAACCCCGTCTCTA  3626

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 3627  CCAAAAATAGAAAAAAATATAGCCGGGCCTGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTA  3700

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 3701  GGAGGATCGCTTGAGCCTGGGTAGAGGCTGCTGTGAGCTGAAATGGCGCCACTGCACTCCAGCCTGGGTAACAG  3774

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 3775  AGCGAGACCCCGACTCAATAAATAAATAAGGATGGATAAATTGTAGCGTATGCACCATTCATTATGCTAAGACA  3848

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 3849  TTTTAAAGTAATTATGAGAAACGCTCTACTAATGATTTGTTTTTATTTGTATTTTTCTGCTTATTAGACAAATA  3922

Query 1111  -----------------  1110
                             
Sbjct 3923  TATACTCATTTTAAAAA  3939

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.