Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_02816
- Subject:
- NR_135913.2
- Aligned Length:
- 4269
- Identities:
- 1170
- Gaps:
- 3095
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTCATTCGAGGTCCGGGTCCGGCTTGCGGGGTCAGCGAACTGGAGAGGCGCCATGGGCTGGAGTAAGCCCCCCT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCACCTTCCGTCCTCGATCGTTCCCCTTGTGGAAGTAGTCCCGGGTCTCGTGGGATCCTCGCCGCCCGCTCCCG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCCTGCGCTGTCGGTTCCCCCGCGCCTGGGCGGACCCTAACCCCACCCGGCCCTCCGCACCGCAGCCCCGGCTG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CACCAGGTCCTCTGCAGACTGGCCGGACAGCCTGGCCTTTTCCAGCTCAGGTTCCTAATCTGTAAAATGGGCGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GGCCGTGGGAAGGGGAGGAAGAGGCAGAAAGGCACTGGACTCCAGGAAAGGGGTCGGGGAACGTGCAGGGGTTT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TGGCGCCAGACACACCACGTTCCGGCCAAGTGGCTCCTTACTGGCTGTGAACGTGGGCCAGTCACTGTCTCCAA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GCCGCAATCTTCGGACTCATTCCGGAAGGCAGTGTAGCCTAATGGTGGAGGGTTCCGACTCTGGAGCCAGGGTT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GAAGTCCTCCCTCTTCCTGTGACTTTGAGCGAGTGACTTCACCCCTTGGGCCTCAGCTTCTTCATCTCCAAAAT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AATGGCAATCATACTACTGTTTTAGACACAGTAAGTGTTATAAACGTGTTTTTGTTTGTTTGTTTGAGACAAGA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GTTTTGCTCTGTCGCCCAGGCTGGAGTGCAGCGGCGCGATCTCGGCCCACTGCAGCCTCCGCCTCCCGGGTTCA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AGCAATTCTCCTGCCTCAGCCACCTGAGTAGCTGGGATTACAGCGTGCACCACCACGCCAGGCTAATTTTTGTA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TTCTTAGTAGAGACGGGGTTTTGCCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCCGC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CTCGGCCTCTCAAAGTGCTGCGATTACAGGCGTGAGCCACTGCGCCCGGTAGTAAACGTGTTTCTTTAAGAATA 962
Query 1 ---------------ATGGGCTG-GATCACAGAAGATCTTATTAGACGGAATGCTGAACACAACGACTGTGTCA 58
|.|.|.|| |.||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TACTAACAAACTGCAAGGTGATGCGGTCACAGAAGATCTTATTAGACGGAATGCTGAACACAACGACTGTGTCA 1036
Query 59 TTTTTTCCCTGGAGGAACTCTCGTTGCATCAGCAAGAAATAGAAAGACTAGAACACATTGATAAATGGTGCCGG 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 TTTTTTCCCTGGAGGAACTCTCGTTGCATCAGCAAGAAATAGAAAGACTAGAACACATTGATAAATGGTGCCGG 1110
Query 133 GATTTAAAAATTCTCTATCTTCAAAATAATCTTATTGGGAAAATTGAAAATGTTAGCAAACTCAAGAAACTTGA 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GATTTAAAAATTCTCTATCTTCAAAATAATCTTATTGGGAAAATTGAAAATGTTAGCAAACTCAAGAAACTTGA 1184
Query 207 ATATTTGAATTTAGCTTTAAACAACATTGAAAAAATAGAAAACTTGGAAGGATGTGAAGAGCTGGCAAAACTTG 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 ATATTTGAATTTAGCTTTAAACAACATTGAAAAAATAGAAAACTTGGAAGGATGTGAAGAGCTGGCAAAACTTG 1258
Query 281 ACCTGACTGTGAATTTCATTGGAGAGCTGAGCAGCATTAAAAACTTGCAGCACAATATCCATCTGAAGGAGCTC 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 ACCTGACTGTGAATTTCATTGGAGAGCTGAGCAGCATTAAAAACTTGCAGCACAATATCCATCTGAAGGAGCTC 1332
Query 355 TTTCTCATGGGGAACCCATGTGCTTCCTTTGACCACTATAGGGAGTTCGTGGTAGCAACTCTTCCACAATTAAA 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 TTTCTCATGGGGAACCCATGTGCTTCCTTTGACCACTATAGGGAGTTCGTGGTAGCAACTCTTCCACAATTAAA 1406
Query 429 GTGGTTGGATGGTAAAGAAATAGAGCCTTCAGAAAGGATTAAGGCATTGCAGGACTATTCAGTAATTGAACCAC 502
|
Sbjct 1407 G------------------------------------------------------------------------- 1407
Query 503 AAATCAGAGAGCAGGAAAAAGATCACTGTCTTAAACGAGCCAAACTCAAGGAAGAGGCTCAGAGGAAACACCAA 576
Sbjct 1408 -------------------------------------------------------------------------- 1407
Query 577 GAAGAGGATAAAAATGAAGACAAGAGAAGTAACGCAGGCTTTGATGGACGTTGGTACACAGACATCAATGCTAC 650
Sbjct 1408 -------------------------------------------------------------------------- 1407
Query 651 TCTTTCCTCTTTAGAGAGCAAAGACCACCTACAGGCACCAGACACAGAGGAACACAACACAAAGAAATTAGACA 724
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1408 ---TTCCTCTTTAGAGAGCAAAGACCACCTACAGGCACCAGACACAGAGGAACACAACACAAAGAAATTAGACA 1478
Query 725 ACAGTGAAGATGACTTGGAATTCTGGAATAAGCCCTGTTTGTTTACTCCTGAATCAAGATTGGAAACTCTTAGA 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1479 ACAGTGAAGATGACTTGGAATTCTGGAATAAGCCCTGTTTGTTTACTCCTGAATCAAGATTGGAAACTCTTAGA 1552
Query 799 CACATGGAAAAACAACGGAAGAAACAGGAAAAATTAAGTGAAAAAAAGAAGAAAGTGAAACCACCCAGGACTTT 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1553 CACATGGAAAAACAACGGAAGAAACAGGAAAAATTAAGTGAAAAAAAGAAGAAAGTGAAACCACCCAGGACTTT 1626
Query 873 GATCACTGAAGATGGGAAAGCCCTAAATGTGAATGAGCCCAAAATTGACTTCTCTTTGAAAGATAACGAAAAGC 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1627 GATCACTGAAGATGGGAAAGCCCTAAATGTGAATGAGCCCAAAATTGACTTCTCTTTGAAAGATAACGAAAAGC 1700
Query 947 AGATCATCCTGGACCTTGCTGTCTATAGGTATATGGATACCTCTTTAATCGATGTTGATGTGCAACCAACTTAC 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1701 AGATCATCCTGGACCTTGCTGTCTATAGGTATATGGATACCTCTTTAATCGATGTTGATGTGCAACCAACTTAC 1774
Query 1021 GTGCGAGTAATGATCAAAGGAAAGCCATTTCAGCTTGTCCTTCCTGCAGAAGTGAAACCCGATAGTAGTTCTGC 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1775 GTGCGAGTAATGATCAAAGGAAAGCCATTTCAGCTTGTCCTTCCTGCAGAAGTGAAACCCGATAGTAGTTCTGC 1848
Query 1095 TAAAAGATCTCAGACAACGGGTCATTTGGTCATCTGCATGCCCAAGGTAGGAGAAGTAATCACAGGTGGTCAGC 1168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1849 TAAAAGATCTCAGACAACGGGTCATTTGGTCATCTGCATGCCCAAGGTAGGAGAAGTAATCACAGGTGGTCAGC 1922
Query 1169 GAGCATTCAAATCTATGAAAACTACCTCGGACAGGAGCAGAGAACAAACAAATACAAGAAGCAAGCACATGGAG 1242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1923 GAGCATTCAAATCTATGAAAACTACCTCGGACAGGAGCAGAGAACAAACAAATACAAGAAGCAAGCACATGGAG 1996
Query 1243 AAACTAGAAGTAGACCCTAGCAAGCACTCATTCCCTGATGTGACTAACATAGTTCAAGAGAAAAAACACACACC 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1997 AAACTAGAAGTAGACCCTAGCAAGCACTCATTCCCTGATGTGACTAACATAGTTCAAGAGAAAAAACACACACC 2070
Query 1317 CAGAAGACGACCTGAACCCAAAATTATACCAAGTGAGGAAGACCCAACCTTTGAAGACAACCCTGAAGTGCCTC 1390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2071 CAGAAGACGACCTGAACCCAAAATTATACCAAGTGAGGAAGACCCAACCTTTGAAGACAACCCTGAAGTGCCTC 2144
Query 1391 CGCTGATT------------------------------------------------------------------ 1398
||||||||
Sbjct 2145 CGCTGATTTGAAACATCTGGCTGCGTTGCCATTGGCTGAGACCCACCAGGTCCAGTTTTGGTTGGTGTAGAGAC 2218
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2219 CATATGCATATTATTCCTGGGATAAACACAGAGTTATTTGTCAATATCGCTGCTCCAGTGTTTTAACTCTTACT 2292
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2293 TTGCATAGTAATATCCTTAAGATAGCTTAAAATTAAAATGTATGTCTTAAATGCTATAACTCATCATTTACCTA 2366
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2367 TAATAAAGGGTTGGTATTGAAAATGTTTAGTAAGATCATAGAACTATTGCATAAAACACTGATTATAAATACTG 2440
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2441 TCTACTTATGCAAAGTATTAATTCATAGATAAAAGGACTGAGTATTAAATTGGTACTTCAGCAAAGTGGTCAAG 2514
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2515 CTTAGAAGTTAAAACTGTAATTTCAGACCCAATTGGAATACTTTAATATGATTTTAAACAGCATTTCCATTTTC 2588
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2589 CTTCCCATGATGTGTCTGCTTTCTCTGGTGGCATGGTATAATGGCAAGAATATGAGTTTTGAAACCAGACACTC 2662
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2663 TATATTTGGATTCCAGCTCAATCACTTTGTAAAGACCTTCAGCAAGTCCTTTAATTCTCTGAGCCTTAGTGGCT 2736
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2737 TCATGTATAATCTGGGAATAATAACACTTGCCTCACAGGTTTGTCTCAAGATAAACTGCAGAAAGCACTTAGTA 2810
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2811 CAGTGTCAGCCATACATTTAGAGCCTCTTCTCTCTCTCCTTCTTCCCTTTCTCCTCTCTCTTCTCCTCCCTTTC 2884
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2885 TCCTGTCTCTCCTCCTCCCTGCTCCTTCTTCCCCTCCCTCCCCAATTACTTTTCTCCCCTTATTCTTTTTCTTC 2958
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2959 ACCTTTTTACTCCCCATCCCACTCCTTCTCCTCTATTTCCTTCTTTACTTTTTTAATATCCTACCTCTTCTTTA 3032
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 3033 TCTAGAACATTATGAATTCAATATTTCACATACATTGTAGGACAAATTACTGTTACTCTGATCATGATATAGCA 3106
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 3107 ACATTTAAGTCAGTTTCCCCAAATATTCATTCAACAAATACTTATTGAGCAACTATTGAGTGCTAGCCCCCTCT 3180
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 3181 CTGTTCATCAGGGATTTAGTAGTAACAAAGCAGACAAATACATACACACAGACTATGTCAGGTGGTGTTCAGAG 3254
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 3255 CTGTGAAGGAGAGTCAGAGTGAGGGAATCAAGGGTGATGGGTGCTTTTTCAGACAGGGCCTTTCTCTATTAAAC 3328
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 3329 AGGCTTCCAGTGGAAGACTCTGCTAATGTTTAGCAGATAACCAAAATGCATCAGTTAGAAAAAAATATGATGAG 3402
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 3403 AATGAGGGACTGGTTATAGGAATGCAATTGGGCACAAATGTGGGAAGAGCTGGGTAGTGAAGCTCTAGAAGGGA 3476
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 3477 GAGGTAGAGAATTGGAAGAAGAAGCACTGGTACAGGTAGACAATTCAGAACTTGCACAGAATCTGAGAAGCTGA 3550
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 3551 AGTAGGACTGTGATTGGGAGCTTGTGGAGAGGTCTATGGAAATTATCATGCTGCTGAAATTGTTGCCTCTATTT 3624
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 3625 ATCTGCTACCCTTCTGGTCCGTGGCCAAGATCCTGGTGGGTGGGCTTGGAGCCAGCCTTCGTCAGCAGGCCTGC 3698
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 3699 GGTAAGAAAGATGGGATGGACACACAGTGGTGGAGATCAAGGATCAGCTGCAGCAGGCTGGGTCCCTCTGCATC 3772
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 3773 TGTCCATCACTGCGACTGATGGCAATGACTGAGTATAACACCTTTCTTCATGGTCAACTCTACCCAGGAACCAC 3846
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 3847 GTAGGGAAGGAAATTCTGGAAAACAGCTCCCAGCCTTAGCCAACTTGACATATCATAATCCAACAGAACTCAAC 3920
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 3921 CTCTACCAACTTGGAAATCATGTACATTTGTCAGGACTGTATTTAATTTCCACATAGAGAGAAAGCAAAATTAT 3994
Query 1399 --------------------------------------------------- 1398
Sbjct 3995 ACTTTTGACCAAACTAATAGAATTATCCATTAAACAAACAAAACTGTGCCA 4045
