Nucleotide Global Alignment

Description

Query:
ccsbBroad304_04579
Subject:
XR_001746417.2
Aligned Length:
3900
Identities:
690
Gaps:
3159

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TTTCCTTAGTAACCTGGGCGATAGCTGATGAGACGGAAGTCCTGAGAGTTTGACCGATTTAAGGTCACGTGCCT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AGGAAGTGCTGGAACCAAGACTCGGAGTTTTCTCTAAGTTTAGTGCCTTTATTTTGTTTTAAACCACACTGTTG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CATTTCCCCCCATTTTGGAAAGCTTTATAGTTGGAAAGAATGAAAACCTGATCTGACCCCTTCATTTTATGGTT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GAAACAAAATCTACGTAGGAGAAATCACTTGGTACAAGTCACAAGTCAGTGGTAGAGCTGCCGCAAATGCTTTT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TGAATACGTGTGATTATGAATCTAAATGGCAGATGGCAGGGAGTGATAAGTGGATGTTTCCAAGGATTGTCTTC  370

Query    1  ----ATGGCCTTGGGATTAAAGTGCTTCCGCATGGTCCACCCTACCTTTCGCAATTATCTTGCAGCCTCTATCA  70
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  AGTCATGGCCTTGGGATTAAAGTGCTTCCGCATGGTCCACCCTACCTTTCGCAATTATCTTGCAGCCTCTATCA  444

Query   71  GACCCGTTTCAGAAGTTACACTGAAGACAGTGCATGAAAGACAACATGGCCATAGGCAATACATGGCCTATTCA  144
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GACCCGTTTCAGAAGTTACACTGAAGACAGTGCATGAAAGACAACATGGCCATAGGCAATACATGGCCTATTCA  518

Query  145  GCTGTACCAGTCCGCCATTTTGCTACCAAGAAAGCCAAAGCCAAAGGGAAAGGACAGTCCCAAACCAGAGTGAA  218
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GCTGTACCAGTCCGCCATTTTGCTACCAAGAAAGCCAAAGCCAAAGGGAAAGGACAGTCCCAAACCAGAGTGAA  592

Query  219  TATTAATGCTGCCTTGGTTGAGGATATAATCAACTTGGAAGAGGTGAATGAAGAAATGAAGTCTGTGATAGAAG  292
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  TATTAATGCTGCCTTGGTTGAGGATATAATCAACTTGGAAGAGGTGAATGAAGAAATGAAGTCTGTGATAGAAG  666

Query  293  CTCTCAAGGATAATTTCAATAAGACTCTCAATATAAGGACCTCACCAGGATCCCTTGACAAGATTGCTGTGGTA  366
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  CTCTCAAGGATAATTTCAATAAGACTCTCAATATAAGGACCTCACCAGGATCCCTTGACAAGATTGCTGTGGTA  740

Query  367  ACTGCTGACGGGAAGCTTGCTTTAAACCAGATTAGCCAGATCTCCATGAAGTCGCCACAGCTGATTTTGGTGAA  440
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  ACTGCTGACGGGAAGCTTGCTTTAAACCAGATTAGCCAGATCTCCATGAAGTCGCCACAGCTGATTTTGGTGAA  814

Query  441  TATGGCCAGCTTCCCAGAGTGTACAGCTGCAGCTATCAAGGCTATAAGAGAA-AGTGGAATGAATCTGAACCCA  513
            |||||||||||||||||||            .||||.|||...||||.|.|| |.|..||||       ..|||
Sbjct  815  TATGGCCAGCTTCCCAGAG------------ACTATGAAGCAAATAAAACAATACTTTAATG-------GGCCA  869

Query  514  GAAGTGG---AAGGGACGCTAATTCGGGTACC----CATT----------------CCCCAAGTA---------  555
            .|.||||   .||||.|.|.||||.|.| |||    ||||                ||.|.||.|         
Sbjct  870  AATGTGGCCTGAGGGCCACCAATTTGTG-ACCTCTGCATTAGTATTTGGAGCAGACCCTCCAGGAAGTCCTTTT  942

Query  556  --ACCAGA--GAGCA---CAGAGAAATGC-TGGTG-------------AAACTGGCCAAACAGAACACCAACAA  608
              ||.|||  ||.||   ||||..|.||| |||.|             |||||||    |..|||       ..
Sbjct  943  ATACTAGACTGACCATTGCAGAATATTGCATGGAGCACAGTGCTTCCAAAACTGG----AAGGAA-------TT  1005

Query  609  GGCC-----AAAGACTCTT----TAC--GGAA---GGT--------TCGCACCAACT----------CAATGAA  650
            ||||     .|.||.||||    |||  ||||   |||        |..||||||||          |..||..
Sbjct 1006  GGCCTGGATTAGGAGTCTTAGAGTACCTGGAATCCGGTCCCATCTCTACCACCAACTGGCTGTTTGACCTTGGG  1079

Query  651  CAAGCTGAAGAAATCCAAGGATACAGTCTCAGAGGACACCATT-------------------------------  693
            ||||.|             |.|.||.||||.| ||.|.|||||                               
Sbjct 1080  CAAGTT-------------GCTTCACTCTCTG-GGCCTCCATTTCCTCATCTGCTAATATAAGTGTACAGCTGC  1139

Query  694  --------AGGCTAATAGAGAAA------------------CAG------------------------------  711
                    ||||||..|||||||                  |||                              
Sbjct 1140  AGCTATCAAGGCTATAAGAGAAAGTGGAATGAATCTGAACCCAGAAGTGGAAGGGACGCTAATTCGGGTACCCA  1213

Query  712  -------ATCAGCCAAATGGCCGATGACACAGTGGCAGAACTGGACAGGCATCTGGCAGTGAAGACCAAAGAAC  778
                   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1214  TTCCCCAATCAGCCAAATGGCCGATGACACAGTGGCAGAACTGGACAGGCATCTGGCAGTGAAGACCAAAGAAC  1287

Query  779  TCCTTGGA------------------------------------------------------------------  786
            ||||||||                                                                  
Sbjct 1288  TCCTTGGATGAAAGTCCACTGGGGCCAGCAATACTCCAGAGCCCAGTTTCTGCTGGATCCCATGGGTGGCACAT  1361

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1362  TGGGACTTCTCTCCCTCCCCCATCTACACAGAAGACTGTCACCATGCTGACAGAAGCCTGTCCTTGTAAGGCCC  1435

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1436  AGCCTTCCAGGGGAACACTCAGACATGTTCATTCTCTTCCTGCTTCTGCTCTGGGCCGGTGGGTGGCTCTCAGA  1509

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1510  AAATACTTGCTGCTGGCAAAAGGCCTGTACTCAGGCATTTGCTTTGACTTGATGTTGCCAAGGGACTGAGGCCA  1583

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1584  TTGGCAGGCTTAGTACCACCTGCTCCTCATCTTAGGAGTCTCCTTTTCAAATAATTAGGCTCTGTTCCCATTTT  1657

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1658  AAAACTCTGATATTGGCCTTCACCTGTGACTGGACACTTTACTAGAGGCCCATTTTCACTAAACAATAAAATCT  1731

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1732  AAATAAATTGGAAGGAATAACAACCACAAAGGAAAGAATAGAGTTGGTCTGGATTGATGATCACTGAGGATCTG  1805

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1806  TATGTGAGGCACCCATAACAGTAGTTTTGCCTGTGAGTCGTCTTCACACATGCTGTTTTCTCTGCCTGGCTCTC  1879

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1880  TCTTCCCCTCCTTACCTGGCCAGTCCTGTTTATCATCAGGCCTTGTCTTGGATATCACGTCCTCTGGGAAGTCT  1953

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1954  TCTTTTCCCCTCTAACCTAGGACCCTCATTACCGGCTCTCATAGCACAGTCTACTGCTTTGTACGAATTCTAAG  2027

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2028  TATTCTTGTTGCACTTAATTAGCCTGTATATCCTCAGAACTTTGTGTAATGCCTGGAGCATAGTAGGCAGTCAT  2101

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2102  ATGTTGTATCGTGAATAAATTGCACATAGTAGCTACCCAGCAAATGCTGACTTCTTTTCTTTCTAGTCTTAACA  2175

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2176  CTCCCTTTCTATCATTTTCCACTCTTGTACTTGTTCTCAACATTTACTTGGTAGTGACATACCTTTCCTGCAGG  2249

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2250  GCCTGCCCATTGTTGACAGACAAGTAGTTTATTGTGGCTTATCTTCGGATACTGGGTTATTAGGTTTTTTTCCC  2323

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2324  TCCAATTATTTTTTATTCATTCATTCATTCCTAATATAGCCATTATGAGTTAGGTATAGTTCTAGGCATTATTT  2397

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2398  ATAATCTTGACAGTAAACTTAAGAGATGTGTATTATCTTCATTTACAAATAGGAAAACTAAGTCTTGACAGTAT  2471

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2472  TAGGTAATTTGCCCAAAGTAACAAAGCAAAGCTGATCAGTGGTAGAAGGTTTTCATGATTCATTGTCAGCGTCA  2545

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2546  TTTACATAGAGGTGAAGTTTCTTGTGCAGGGTTACACACCTAGCAAGTAGCAGAGCTGGCATTCAAATTGAGGC  2619

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2620  CTGATGTGCTAATGTAAAAGGAAAAAAACAAACTTTTTTTCCTTTTGTACTTTCACACTCAACATGGAACACTT  2693

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2694  CTGTGACAAGGTGTGTGAGTTTGTTTCCCCCACACACCAAGCAATTCTCCAGCAGACACCAACTGGGTATCCTA  2767

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2768  TAATTCAATTCATTTCTGACATTACCTGGAAATAGTGTCAGATCCCACAGGTTGAGGGCTCCATCTCCCAAGAC  2841

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2842  TGCCAACACTTTTGATGCCAGTCATGAGTCTGGGCCACCCATACTCCTGACTGACCAACTACAAACTAGAGTCC  2915

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2916  TTGATTTCCTTTGGTTCAGTTAATTTCCTAGGACAGCTCACACAACTCAGGGAAACACGTTCACTGGTTTATTA  2989

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2990  TAAAAGATACAGCTGAACAGCCCAATGAAGGAGGTACACAGGGCAAGGTTGAGGGAGAGGGAGAGGGTGTGGAG  3063

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3064  CTTCCATGCCTTCTCTGGGCTCACACTCTCTCAGCACCTCACCAATCTGGAAGGAACCACTGTGTCCTGCTGCC  3137

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3138  TTCATTAGCATTTAGTGAGCACCAATTGTTTGTCAGGTGCTGAACTATGTACTGGCAATACAAAAATGGGAAAG  3211

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3212  ATATGACCCCTGTTTTGGGGGGGTACATAGTGCACTGAACTAAATTGCTGTCTATAATAATCTATTGGGTGGAA  3285

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3286  AAGTAGGAAGTTCATTCCAGTTCTGCAAGGTGTCTGCTTTCAGAATGGAGCCCACTTTGGTGGTGGCAAGGCCT  3359

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3360  GGCTGAGTTCTTTCAAAGCAACATCCAACTTCTCTTTGCTCTTTGACTTCCTCCAGATTCTCTCCTGTGCTGGA  3433

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3434  GGTAATAAGGGTTGCACTTCCCTCTTTACTTACACTGGTGAAACATGCAGTGAGGATTCAAGGTCAAAATTGGG  3507

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3508  TCAAAGTTAAACTAACACAGTCTCCTGCCCCACTTACCTGTCCTCTAACCCCATCCACCAGCCCTAAGTGGTCA  3581

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3582  TCACATGATCAGAAGTCAGCTGGGGGAAGAGCAGGGATAGATAGAGCAATTAAGGAGCCTCTTTTGGGGTAAGC  3655

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3656  CACATGACAGGGGCTTTGCAACAGTCTTTCATGAGTGGCCGAAATCCCCCACTCACTGCAAATGTGCTTCTCAA  3729

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3730  AGATGCAGGATTTTTTAATAAACAGAGGAAATGATAAATTATGTTGTAATTCCACTCCAAAGGCATTTGGTTCT  3803

Query  787  ----------------------------------------------------  786
                                                                
Sbjct 3804  TAACAGCCAAATCCTCTGTAGTCTTTAAATAAACAAAAACTTATTTGGTGAA  3855

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