Nucleotide Global Alignment

Description

Query:
ccsbBroad304_05019
Subject:
XR_001736990.1
Aligned Length:
4667
Identities:
1315
Gaps:
3351

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CGGAGGAGCGGGGCCGGGAGCTGCGAGGAGCCCCCCAGACGTCGCCGAGCGCGAGGGCGGGCGTGCTCGGAGTG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GTCGCTCGTCAGCCGCCGCCCCTCAGTCTCCGCACTTGCAGGTCCCCTCCCTCTCCGCCGGGACGCGGGAGAGC  148

Query    1  -----------------------ATGCGAAACTGGCTGGTGCTGCTGTGCCCGTGTGTGCTCGGGGCCGCGCTG  51
                                   |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  CCGGCTCGCGGCGGGGGCGGCCAATGCGAAACTGGCTGGTGCTGCTGTGCCCGTGTGTGCTCGGGGCCGCGCTG  222

Query   52  CACCTCTGGCTGCGGCTGCGCTCCCCGCCGCCCGCCTGCGCCTCCGGGGCCGGCCCTGCAGATCAGTTGGCCTT  125
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  CACCTCTGGCTGCGGCTGCGCTCCCCGCCGCCCGCCTGCGCCTCCGGGGCCGGCCCTGCAGATCAGTTGGCCTT  296

Query  126  ATTTCCTCAGTGGAAATCTACTCACTATGATGTGGTAGTTGGCGTGTTGTCAGCTCGCAATAACCATGAACTTC  199
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  ATTTCCTCAGTGGAAATCTACTCACTATGATGTGGTAGTTGGCGTGTTGTCAGCTCGCAATAACCATGAACTTC  370

Query  200  GAAACGTGATAAGAAGCACCTGGATGAGACATTTGCTACAGCATCCCACATTAAGTCAACGTGTGCTTGTGAAG  273
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GAAACGTGATAAGAAGCACCTGGATGAGACATTTGCTACAGCATCCCACATTAAGTCAACGTGTGCTTGTGAAG  444

Query  274  TTCATAATAGGTGCTCATGGCTGTGAAGTGCCTGTGGAAGACAGGGAAGATCCTTATTCCTGTAAACTACTCAA  347
            |||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||
Sbjct  445  TTCATAATAGGTGCTCATGGCTGTGAAGTGCCTGTGGAAGACAGGGAGGATCCTTATTCCTGTAAACTACTCAA  518

Query  348  CATCACAAATCCAGTTTTGAATCAGGAAATTGAAGCGTTCAGTCTGTCCGAAGACACTTCATCGGGGCTGCCTG  421
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  CATCACAAATCCAGTTTTGAATCAGGAAATTGAAGCGTTCAGTCTGTCCGAAGACACTTCATCGGGGCTGCCTG  592

Query  422  AGGATCGAGTTGTCAGCGTGAGTTTCCGAGTTCTCTACCCCATCGTTATTACCAGTCTTGGAGTGTTCTACGAT  495
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  AGGATCGAGTTGTCAGCGTGAGTTTCCGAGTTCTCTACCCCATCGTTATTACCAGTCTTGGAGTGTTCTACGAT  666

Query  496  GCCAATGATGTGGGTTTCCAGAGGAACATCACTGTCAAACTTTATCAGGCAGAACAAGAGGAGGCCCTCTTCAT  569
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GCCAATGATGTGGGTTTCCAGAGGAACATCACTGTCAAACTTTATCAGGCAGAACAAGAGGAGGCCCTCTTCAT  740

Query  570  TGCTCGCTTCAGTCCTCCAAGCTGTGGTGTGCAGGTGAACAAGCTGTGGTACAAGCCCGTGGAACAATTCATCT  643
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  TGCTCGCTTCAGTCCTCCAAGCTGTGGTGTGCAGGTGAACAAGCTGTGGTACAAGCCCGTGGAACAATTCATCT  814

Query  644  TACCAGAGAGCTTTGAAGGTACAATCGTGTGGGAGAGCCAAGACCTCCACGGCCTTGTGTCAAGAAATCTCCAC  717
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TACCAGAGAGCTTTGAAGGTACAATCGTGTGGGAGAGCCAAGACCTCCACGGCCTTGTGTCAAGAAATCTCCAC  888

Query  718  AAAGTGACAGTGAATGATGGAGGGGGAGTTCTCAGAGTCATTACAGCTGGGGAGGGTGCATTGCCTCATGAATT  791
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  AAAGTGACAGTGAATGATGGAGGGGGAGTTCTCAGAGTCATTACAGCTGGGGAGGGTGCATTGCCTCATGAATT  962

Query  792  CTTGGAAGGTGTGGAGGGAGTTGCAGGTGGTTTTATATATACTATTCAGGAAGGTGATGCTCTCTTACACAACC  865
            |||||||||||||||||||||||||||||||||||||||||||||||||                         
Sbjct  963  CTTGGAAGGTGTGGAGGGAGTTGCAGGTGGTTTTATATATACTATTCAG-------------------------  1011

Query  866  TTCATTCTCGCCCTCAAAGACTTATTGATCATATAAGGAATCTCCATGAGGAAGATGCCTTACTGAAGGAGGAA  939
                                                                                      
Sbjct 1012  --------------------------------------------------------------------------  1011

Query  940  AGCAGCATCTATGATGATATTGTTTTTGTGGATGTTGTCGACACTTATCGTAATGTTCCTGCAAAATTATTGAA  1013
                                                                                      
Sbjct 1012  --------------------------------------------------------------------------  1011

Query 1014  CTTCTATAGATGGACTGTGGAAACAACGAGCTTCAATTTGTTGCTGAAGACAGATGATGACTGTTACATAGACC  1087
                       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012  -----------GGACTGTGGAAACAACGAGCTTCAATTTGTTGCTGAAGACAGATGATGACTGTTACATAGACC  1074

Query 1088  TCGAAGCTGTATTTAATAGGATTGTCCAAAAGAATCTGGATGGGCCTAATTTTTGGTGGGGAAATTTCAGACTG  1161
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075  TCGAAGCTGTATTTAATAGGATTGTCCAAAAGAATCTGGATGGGCCTAATTTTTGGTGGGGAAATTTCAGACTG  1148

Query 1162  AATTGGGCAGTTGACCGAACCGGAAAGTGGCAGGAGTTGGAGTACCCGAGCCCCGCTTACCCTGCCTTTGCATG  1235
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1149  AATTGGGCAGTTGACCGAACCGGAAAGTGGCAGGAGTTGGAGTACCCGAGCCCCGCTTACCCTGCCTTTGCATG  1222

Query 1236  TGGGTCAGGATATGTGATCTCCAAGGACATCGTCAAGTGGCTGGCAAGCAACTCGGGGAGGTTAAAGACCTATC  1309
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1223  TGGGTCAGGATATGTGATCTCCAAGGACATCGTCAAGTGGCTGGCAAGCAACTCGGGGAGGTTAAAGACCTATC  1296

Query 1310  AGGGTGAAGATGTAAGCATGGGCATCTGGATGGCTGCCATAGGACCTAAAAGATACCAGGACAGTCTGTGGCTG  1383
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1297  AGGGTGAAGATGTAAGCATGGGCATCTGGATGGCTGCCATAGGACCTAAAAGATACCAGGACAGTCTGTGGCTG  1370

Query 1384  TGTGAGAAGACCTGTGAGACAGGAATGCTGTCTTCTCCTCAGTATTCTCCGTGGGAACTGACGGAACTGTGGAA  1457
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371  TGTGAGAAGACCTGTGAGACAGGAATGCTGTCTTCTCCTCAGTATTCTCCGTGGGAACTGACGGAACTGTGGAA  1444

Query 1458  ACTGAAGGAACGGTGCGGTGATCCTTGTCGATGTCAAGCAAGA-------------------------------  1500
            |||||||||||||||||||||||||||||||||||||||||||                               
Sbjct 1445  ACTGAAGGAACGGTGCGGTGATCCTTGTCGATGTCAAGCAAGATAACAGGGACTTGAATTAGCAGAGTCTAAAA  1518

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 1519  TCAGGGCAGGCAAACGATAATCTGAGTGCAAGTCTGAGGAGTCCCAGGGTTTAGCAGTAGACTGTATGGTCTTT  1592

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 1593  CAAGAGAGTTCCAGACTGGCACTTTCACCCAGAACCAATGCGGTGTTTCTTAATGTTTGCACAAATTTCCTTAA  1666

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 1667  AAATCAACTTGTACTGTAGCATAAGAAAAGTTTTTATTTATCTATTGGAAGATTATCAGAAAAATACCAAGTTA  1740

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 1741  TTTTATAAAAGAAAAAATATTTCTAAATCCTGATGCATTGTGGCTAATTAGTAATTCACCATTACCTATAGTTT  1814

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 1815  TTGGTTAAAACTTGGCCTAGTTCAGAAATCTGTAGTAGTAACTGAGAGTTTGAATTTCAACCTGGATTGCAGGA  1888

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 1889  TAGCTCTGTAGAGCTAATTAGGATAATTATCAGACAAAAAGGAACTCACAGGAATGCTGTGTGATCATGTGATC  1962

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 1963  ACATATTTGAGCAGTGGTCACTTATACCAAAGTTTGGGGTTTCTGGAAATAATGTCAGATTTTGTGGATCTCTG  2036

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 2037  AAGTGGGCAACTTGAACTAACTTGAAGAGGAACCAATATGATTCTCAGTTCTGAACCTTGGTTTTAAAGAAGTT  2110

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 2111  CATTTATATGGTAGACTAATACCCAAATTTTCTTTCTGCCATCTAACATAAATCCTGAAGGTCACAGTTTAGTA  2184

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 2185  CTCATAGTTTTTAAATGCTAAAGTTGTGTGAGTATGAATAAAAGCAAATACCTCTCAGGGTTTTAGTGCCATCG  2258

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 2259  GGAAGGATATTTCTAAATTTTGTTGACATTTTGAAAGAATTAGTTTTGCTTTCCTCCTATCATTGCCTAATGTT  2332

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 2333  TACCTAATATGAGTACATTTCAATCAAAGCTGGTTATCACAGAAGAAGATATACTCAGCTTAGGTATAATTGTA  2406

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 2407  GGGAAAAGCATGTGATTAATTTAAGTACTCTTAGAAATAGTGCAACTGAGAAGACAGATAATAGCATATTGTTA  2480

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 2481  TACATAGTAGAGGATGTCTCCCCAAGTTTAAGGGACATTTCCCAAAATGACCAACCAAATCATTTCTAGTAACC  2554

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 2555  CTTTAAAATAGTAGTTTCAATAGAGAATTCCATTAAAACTAGTCTTATGACAGATATTAACTGTGTTCAGATTT  2628

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 2629  TATTAGGCTAGCTAGTTTCTTTCTATTTAATATTTAAATCTTATCATGAAATGCAGTGATGAGCTGTAAAAATA  2702

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 2703  AATATGAAATAAGATCAGAAAATCATTAGTAGGTTCAAAGCCTTTATTATTGCTATTATGTATAAGCCTAGAAA  2776

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 2777  TGGTCACTTCCCAACAAAAAATACATCCCTTGTTATACTTAGGACAAGTTGTAAACCCCCTTTGTTTTGACAGT  2850

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 2851  AGAATTGTTCCAGTGAATCATTTATTTCCGGTGAACCCCAGACACGATAAGCAGTGTGGTCTTTAAATTTTATT  2924

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 2925  AGTTGGTTGTCACCATCGCACTAATAGACAATCTCCATTTTCCACAGAATAAAACTGTAATGACTTTAGGTCAT  2998

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 2999  TTTCCAGCTCGATTTCTCTGCCCGGCTTCTAAAATTAGAACGAAGGTGGGGAAGGATGTGATTAAGACAGATCC  3072

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 3073  GATAAAGCATGCTACACATACTCTTCCCCCACCCCGTCCCCAGGCAGTAGCTTACCCTTAAAATCAAACAAACA  3146

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 3147  GACCCATGGTCTCCATTTAGAATCAAACTGTTGCTATCTAGAGACAGTTTAATGTCATAATACGAGGACTAAGC  3220

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 3221  TTGACTTTGACTTTGTATTTTGCTGGGCAACTTACTTTGGGACTTTCATAGGACAACAGAAGGTCTGACACAGG  3294

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 3295  AACTTTGAGAAGACGTGACAGCAATCCCTTCACCTTTTGAATTGTCATGGAGCCTATCAAAAGACAAGAAAAGT  3368

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 3369  CCATTCGTTCTCTCAAATGACAGTTACCTGTAAAACTAGCTCATGTGATGAGACCACAGTATCATTGCAATGAT  3442

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 3443  AGCTGTATCTGTCTTTTTTTTTTTTTTTTTTTTGAGACTGACTTACTTACTTACTTAAGTAAGTCTTGCTCTGT  3516

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 3517  CGCCCAGGCTGGAGTGCAATGGTGTAATCTCGGCTCACTGCAACCTCCGCTTCCCGGGTTCAAACAATTCTCCT  3590

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 3591  GCCTCAGCCTCCTGAGTAGCTGGTGCCCATCACCACACCCAGCTAACTTTTGTATTTTTAGTAGAGACGGGGTT  3664

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 3665  TCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCGTGATCCGCCCGCCCTGGCCCCCCAAAGTGCTGGG  3738

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 3739  ATTACAAGCATGAGCCCAGCGCCTGGCTGTATCTTTCATTTTACCCAAGTCACTTTACCCAAGTAAGTAATTAG  3812

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 3813  GGGAAAGCCTGAGTCTTGTACCACCTGTTCATTTGGGGAACTGTGGGAAACGGAGCCAACGGACCTAAGTGCCC  3886

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 3887  TTTGACAGTGAGTTTCATACCATTTCAGTAGTGTATTTCTTTCTTAATCTGAATAAACCAGAATGATACTCTCA  3960

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 3961  GCACAGAAGAATAAAGGGAGCGAGTCATTAACGTTTTCTTTTTAAACCTTTATGATGACTTCCTTATGAATTAC  4034

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 4035  TGAACGAACACTGGAATGGGACTCAGGTATCCTGAGGACATCTCTCAACTCTGGCCTTAGTTCCCCCTCTGTAA  4108

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 4109  AATTAGGGTGCCAACTAAATGATCTACAAGGTCCCTTCCAGCGCCGCCATTCTGTAATTACATCATGTGTAACT  4182

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 4183  GTATTAAACATACACAAGTGACTGCCAGGCATGGGAATGTAACTTCCGAGTAAATGCTTTGGTTTGTTCAGAAT  4256

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 4257  ACACTATGAACTTCTTTCCAAAGACGGGTTGTGGTAAATAGTGGATATTTTGATTATAAGAAATAGAGTTTCCT  4330

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 4331  TGAAGCTTTAGCTGGAGATACAGCAATAGTGTGGTGTTCCTACAAATATCACAGTGTATTCAAACATATTTTTC  4404

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 4405  TATCAAAAATCATTTTTGTAAAAGCTGTGTGTTTTTATCCAACTTGTGATAATAAATGTTCTTTATTTTAGAAT  4478

Query 1501  -----  1500
                 
Sbjct 4479  AAAAA  4483

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