Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_07353
- Subject:
- NR_148699.2
- Aligned Length:
- 4547
- Identities:
- 1630
- Gaps:
- 2916
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACGTGACGGGCCCGGCTGTAGCGGCGGCGGCCGCGGCGTCTTAAGCGGCGCCCAGTGCAGGATGGTGCTGGAGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CGGCGGCGGCCGTGGTGGCGGCAGCGTCGTTGGCGGCAGCGGGAGTGGGTGCGGCGGCAGCGGCGGCGGCGCCC 148
Query 1 --------------ATGGCGGATTTCGAAGATTTGAGGAATATGGTTTCTAGTTTTAGGGTTTCTGAACTACAA 60
|||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 GCGGGTGGTATAAAATGGCGGATTTCGAAGAGTTGAGGAATATGGTTTCTAGTTTTAGGGTTTCTGAACTACAA 222
Query 61 GTATTACTAGGCTTTGCTGGACGGAATAAAAGTGGACGCAAGCATGACCTCCTGATGAGGGCGCTGCATTTATT 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GTATTACTAGGCTTTGCTGGACGGAATAAAAGTGGACGCAAGCATGACCTCCTGATGAGGGCGCTGCATTTATT 296
Query 135 GAAGAGCGGCTGCAGCCCTGCGGTTCAGATTAAAATCCGAGAATTGTATAGACGCCGATATCCACGAACTCTTG 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GAAGAGCGGCTGCAGCCCTGCGGTTCAGATTAAAATCCGAGAATTGTATAGACGCCGATATCCACGAACTCTTG 370
Query 209 AAGGACTTTCTGATTTATCCACAATCAAATCATCGGTTTTCAGTTTGGATGGTGGCTCATCACCTGTAGAACCT 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 AAGGACTTTCTGATTTATCCACAATCAAATCATCGGTTTTCAGTTTGGATGGTGGCTCATCACCTGTAGAACCT 444
Query 283 GACTTGGCCGTGGCTGGAATCCACTCGTTGCCTTCCACTTCAGTTACACCTCACTCACCATCCTCTCCTGTTGG 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GACTTGGCCGTGGCTGGAATCCACTCGTTGCCTTCCACTTCAGTTACACCTCACTCACCATCCTCTCCTGTTGG 518
Query 357 TTCTGTGCTGCTTCAAGATACTAAGCCCACATTTGAGATGCAGCAGCCATCTCCCCCAATTCCTCCTGTCCATC 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TTCTGTGCTGCTTCAAGATACTAAGCCCACATTTGAGATGCAGCAGCCATCTCCCCCAATTCCTCCTGTCCATC 592
Query 431 CTGATGTGCAGTTAAAAAATCTGCCCTTTTATGATGTCCTTGATGTTCTCATCAAGCCCACGAGTTTAGTTCAA 504
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CTGATGTGCAGTTAAAAAATCTGCCCTTTTATGATGTCCTTGATGTTCTCATCAAGCCCACGAGTTT------- 659
Query 505 AGCAGTATTCAGCGATTTCAAGAGAAGTTTTTTATTTTTGCTTTGACACCTCAACAAGTTAGAGAGATATGCAT 578
Sbjct 660 -------------------------------------------------------------------------- 659
Query 579 ATCCAGGGATTTTTTGCCAGGTGGTAGGAGAGATTATACAGTCCAAGTTCAGTTGAGACTTTGCCTGGCAGAGA 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 ----AGGGATTTTTTGCCAGGTGGTAGGAGAGATTATACAGTCCAAGTTCAGTTGAGACTTTGCCTGGCAGAGA 729
Query 653 CAAGTTGCCCTCAAGAAGATAACTATCCAAATAGTCTATGTATAAAAGTAAATGGGAAGCTATTTCCTTTGCCT 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 CAAGTTGCCCTCAAGAAGATAACTATCCAAATAGTCTATGTATAAAAGTAAATGGGAAGCTATTTCCTTTGCCT 803
Query 727 GGCTATGCACCACCGCCTAAAAATGGGATTGAACAGAAGCGCCCTGGACGCCCCTTGAATATTACATCTTTAGT 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 804 GGCTATGCACCACCGCCTAAAAATGGGATTGAACAGAAGCGCCCTGGACGCCCCTTGAATATTACATCTTTAGT 877
Query 801 TAGGTTATCTTCAGCTGTGCCAAACCAAATTTCCATTTCTTGGGCATCAGAAATTGGGAAGAATTACTCTATGT 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 878 TAGGTTATCTTCAGCTGTGCCAAACCAAATTTCCATTTCTTGGGCATCAGAAATTGGGAAGAATTACTCTATGT 951
Query 875 CTGTATATCTTGTACGGCAGCTTACATCAGCCATGTTATTACAGAGATTAAAAATGAAAGGTATTAGAAACCCT 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 CTGTATATCTTGTACGGCAGCTTACATCAGCCATGTTATTACAGAGATTAAAAATGAAAGGTATTAGAAACCCT 1025
Query 949 GATCATTCCAGAGCACTAATTAAAGAAAAACTTACTGCAGATCCTGATAGTGAAATTGCTACAACTAGCCTTCG 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 GATCATTCCAGAGCACTAATTAAAGAAAAACTTACTGCAGATCCTGATAGTGAAATTGCTACAACTAGCCTTCG 1099
Query 1023 GGTATCCTTGATGTGCCCTTTAGGAAAAATGAGGCTGACAATCCCATGCCGTGCAGTGACTTGTACACATCTGC 1096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1100 GGTATCCTTGATGTGCCCTTTAGGAAAAATGAGGCTGACAATCCCATGCCGTGCAGTGACTTGTACACATCTGC 1173
Query 1097 AGTGTTTTGATGCTGCCCTCTATCTACAAATGAATGAGAAAAAGCCCACCTGGATTTGTCCTGTGTGTGACAAA 1170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1174 AGTGTTTTGATGCTGCCCTCTATCTACAAATGAATGAGAAAAAGCCCACCTGGATTTGTCCTGTGTGTGACAAA 1247
Query 1171 AAAGCTGCCTATGAAAGTCTAATATTAGATGGGCTTTTTATGGAAATTCTCAATGACTGTTCTGATGTAGATGA 1244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1248 AAAGCTGCCTATGAAAGTCTAATATTAGATGGGCTTTTTATGGAAATTCTCAATGACTGTTCTGATGTAGATGA 1321
Query 1245 GATCAAATTCCAAGAAGATGGTTCTTGGTGTCCAATGAGACCGAAGAAAGAAGCTATGAAAGTATCCAGCCAAC 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1322 GATCAAATTCCAAGAAGATGGTTCTTGGTGTCCAATGAGACCGAAGAAAGAAGCTATGAAAGTATCCAGCCAAC 1395
Query 1319 CGTGTACAAAAATAGAAAGTTCAAGCGTCCTCAGTAAGCCTTGTTCAGTGACTGTAGCCAGTGAGGCAAGCAAG 1392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1396 CGTGTACAAAAATAGAAAGTTCAAGCGTCCTCAGTAAGCCTTGTTCAGTGACTGTAGCCAGTGAGGCAAGCAAG 1469
Query 1393 AAGAAAGTAGATGTTATTGATCTTACAATAGAAAGCTCTTCTGACGAAGAGGAAGACCCTCCTGCCAAAAGGAA 1466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1470 AAGAAAGTAGATGTTATTGATCTTACAATAGAAAGCTCTTCTGACGAAGAGGAAGACCCTCCTGCCAAAAGGAA 1543
Query 1467 ATGCATCTTTATGTCAGAAACACAAAGCAGCCCAACCAAAGGGGTTCTCATGTATCAGCCATCTTCTGTAAGGG 1540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1544 ATGCATCTTTATGTCAGAAACACAAAGCAGCCCAACCAAAGGGGTTCTCATGTATCAGCCATCTTCTGTAAGGG 1617
Query 1541 TGCCCAGTGTGACTTCGGTTGATCCTGCTGCTATTCCGCCTTCATTAACAGACTACTCAGTACCATTCCACCAT 1614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 TGCCCAGTGTGACTTCGGTTGATCCTGCTGCTATTCCGCCTTCATTAACAGACTACTCAGTACCATTCCACCAT 1691
Query 1615 ACGCCAATATCAAGCATGTCATCAGATTTGCCAGGAGAACAAAGAAGAAATGATATTAATAATGAACTGAAGCT 1688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1692 ACGCCAATATCAAGCATGTCATCAGATTTGCCAGGAGAACAAAGAAGAAATGATATTAATAATGAACTGAAGCT 1765
Query 1689 TGGAACATCTTCTGATACTGTGCAACAG---------------------------------------------- 1716
||||||||||||||||||||||||||||
Sbjct 1766 TGGAACATCTTCTGATACTGTGCAACAGTGAATACAAAATAAAACAAATAATTTGTATTTATGGAGTGGAAAAC 1839
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 1840 AGCTTATTTCAAGGAAAAATATGACTGCCTTATTATTGCTAGTGCCATATTGTCAGGTGCGAATGGTGCTCAAA 1913
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 1914 AGTTGTATCATTAAAATTTGAAAGTGCTAAACATTTACATATTTAATCATGTAGCAGTTATGTTTTGTTAAAAG 1987
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 1988 TTTATGACTCAAATAAGGAAAATGTGTTGTCATCAATGAGAAAAAATCTAATGAGTCAATTTCACAGTGAAGCA 2061
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 2062 CTTAAAATTTTTAAATTAAAATTTTATCAGTGTTAATAAAATAATGTTAACACTACCTGCTTTTTAGTTAAAAG 2135
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 2136 TAATTGAGCATTTTCAACCATGAAATACTTCGGAGGGCATAAAAATATATCAGTATGACACGCTGCAGTTGAAA 2209
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 2210 CTTATGGTGAAATAAGAAACAGCATTTTGCTAAACTTACGAAACAAGGCAGTAAAATTTTAATCACTACTGATG 2283
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 2284 AAACTTGATTTTATATAAGAGTTTTAATATTCTGCTTAAAATGTAAAATGCAAGAAGACTTTGATGGTTTCGTT 2357
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 2358 TTTTGTTAGAAAGAATAACATCTAAAATACCATATCAAACTTCACTGTTAGTACTTGAGAAAAAAATGGTTTCA 2431
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 2432 GTGAGAGAAATATTTACATTAAACAGGTTTTATATAGACAGCACCCTTGTAATGCTTGGTAAACAATCTAGAAT 2505
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 2506 TCCAACCAATATTTTAGAAAAATTTCTAGGTATTTTATTATGGTGTTGTATAAGTCACCACATTCAATTTTCCG 2579
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 2580 TGGATGAGGTATCAATATACAGATAAGTAAATCTCTTAATTGTTTTCTAAATAAACTTTATATTTACCACACAC 2653
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 2654 ATGAAATCATCAAAGAGAATTACAGTACATCTGAAGAACTGGAATTGAAATAACAAAAATAGGATCCTCAGTGG 2727
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 2728 GTATTCTCTGGTGATAGAGCTTCAATTTTTAATTTCAATTAAAATAAATAGGCTTGATATAATTTTCAAACTGT 2801
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 2802 TTTATATCAAGCTTGCGTATTTTAATTGAAATTCTGAAATTGAAATAGTTGAACATTTAGAAAATGAGCATTTT 2875
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 2876 TGAGTGGCTTGGCTTCAGTACACAATATTCCAACACCATTGTCAATACTTAGCGTTATAAAAAGGTTTCAGTTA 2949
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 2950 CTAACATGAACTGAGAGATACAGCAAATATTAAAGATGATTGAACATATGAAACTGAAAAACTATAAAAAGGTA 3023
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 3024 GAAGCTATTGTAAAAATGAAGAAAACTGAAAAACTGAAAAGATAAGAAGTTACTGTAAAAAGAAAACGGTTATA 3097
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 3098 CCATTTGAAGCAGAACAAAATGTTCCAATAAACTTTTTTTACTTAATAATAGAAATATTGAAAATGCAAAACTC 3171
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 3172 TGAAGGTATTACAAGGGCTAGACAAATTTTGAATTGTTTGGCATAAGAAGGGAGAGGATTTATTGAATATTATT 3245
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 3246 AATATGAAGACAAAATCTGCTTATTGAGATATCTCACCTATTATCATTTTAATAGAGAAGTCATTGGAAAAGTT 3319
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 3320 TGTTGTAATTCTCTTTGGTTTAGTATTGGCTCAAACCACTGTGTCATATAGCTAGTGACAGACATATGAAATGA 3393
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 3394 AAAATTACAGCAAGCTGGGTGCGGTGGCTTATGTCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGAGGATC 3467
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 3468 ACTTGAGCTCTGGAGTTCAAAACCAACCTAGGCAACATAGCGAGACCCTCTCTCTACAAAAAAAAAATAATAAT 3541
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 3542 AATAATTAGCTGGGCATAGTGACACACACCTGTAGCTCCTGCTTCTTGCGAAGCTGAGGCCAGAAGGTAAAGGC 3615
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 3616 TACAGTTACCTATGATTGTGCCTCTGCACTCCAGCCTGGGCAACAGAGCAGACTCAGTGTCTCCCAAAAAAAGG 3689
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 3690 AAAAAAAAAAAATCTGTAGCAACAATTTTCAAAAAGGCTTTAGAAATCGTTGGAATGATTTCTTTCAAATGATT 3763
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 3764 GGTGCTATAGCTTGTATCACTTGATAAGCATTTTTGTAATACCCTTATTTGGAGATTATAAGAGAATAAATATA 3837
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 3838 CTTAAATTTTTTGAGTTATAAATTCATACTGGTTAGTAGATATTTTAAATGTACCCACTGATATTCTCTATTTT 3911
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 3912 GCATAAAAGCATAATGTCAGACTTTCTCTGTGTGGTGGTTATATTCGGGGTGTCTCTGAATGCCAGCATAAAAA 3985
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 3986 TTCACGGAATTGAATAGAAATTGGCCTGTCTTAATGACCTATGGTTTCTTTTTTAATGTTTTGAAATAATTAAA 4059
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 4060 GAGAGTTTAGTCACACAGGGAGGTCTAGGTGAACTGATGTTGAAGTTTATTACTAGACTTTTCAGACCTAAAAA 4133
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 4134 TTTTATTTATTGTTATTACTTGAATATGTCAAAAGTATATTACTGGACAACCTTTTACACATTCCTCTTTCTAA 4207
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 4208 AATCGAATTGGACAATTACAGTTCTCTGGTTCAGAAAATTACATTAGCTCAGAACCCAGTAACCCTTGATAACC 4281
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 4282 CTGTTAGCGCAGCAATTCCCGAGTGTGTGCTTTGTGCAGAGCGTTGGACTATGTACTGCTCTTGATGTGGGGAC 4355
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 4356 AGCGGGGACAGAGAGCTGTCATTGAAATAGACATCTGTTTAAGAAGCGATACTTAGATGAACCTCTGTATTTCT 4429
Query 1717 --------------------------------- 1716
Sbjct 4430 GAAAAATAAATGTGAAATATCTTAAGAGCTTAA 4462
