Nucleotide Global Alignment

Description

Query:
ccsbBroad304_07959
Subject:
NM_001199809.1
Aligned Length:
2886
Identities:
2738
Gaps:
147

Alignment

Query    1  ATGGCGTCAAACTCAACTAAGTCTTTCCTGGCAGATGCCGGCTATGGCGAACAGGAACTGGATGCCAACTCTGC  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGGCGTCAAACTCAACTAAGTCTTTCCTGGCAGATGCCGGCTATGGCGAACAGGAACTGGATGCCAACTCTGC  74

Query   75  CCTTATGGAATTGGACAAAGGCCTAAGATCTGGCAAACTTGGTGAACAGTGTGAAGCAGTTGTTCGCTTTCCCA  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  CCTTATGGAATTGGACAAAGGCCTAAGATCTGGCAAACTTGGTGAACAGTGTGAAGCAGTTGTTCGCTTTCCCA  148

Query  149  GACTTTTTCAGAAGTATCCATTCCCTATTCTTATCAATTCTGCATTCCTAAAGTTAGCTGATGTTTTCAGAGTT  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  GACTTTTTCAGAAGTATCCATTCCCTATTCTTATCAATTCTGCATTCCTAAAGTTAGCTGATGTTTTCAGAGTT  222

Query  223  GGAAATAATTTCCTGAGGCTATGTGTTCTTAAAGTTACCCAACAAAGTGAGAAACATTTGGAGAAGATTCTAAA  296
            |                                                                         
Sbjct  223  G-------------------------------------------------------------------------  223

Query  297  TGTGGATGAATTTGTGAAGAGAATTTTTTCTGTGATTCATAGTAATGATCCTGTGGCAAGAGCCATCACCCTCC  370
                                                                                      
Sbjct  224  --------------------------------------------------------------------------  223

Query  371  GGATGTTGGGAAGTCTGGCATCAATAATTCCTGAGAGGAAGAATGCTCATCATAGTATTCGTCAGAGTTTAGAT  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  224  GGATGTTGGGAAGTCTGGCATCAATAATTCCTGAGAGGAAGAATGCTCATCATAGTATTCGTCAGAGTTTAGAT  297

Query  445  TCACATGATAATGTAGAAGTTGAAGCTGCTGTTTTTGCTGCTGCAAACTTCTCTGCACAGTCAAAGGATTTTGC  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  298  TCACATGATAATGTAGAAGTTGAAGCTGCTGTTTTTGCTGCTGCAAACTTCTCTGCACAGTCAAAGGATTTTGC  371

Query  519  TGTAGGAATCTGTAACAAAATCAGTGAAATGATTCAAGGTTTAGCGACACCAGTAGACTTGAAGCTAAAATTGA  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  372  TGTAGGAATCTGTAACAAAATCAGTGAAATGATTCAAGGTTTAGCGACACCAGTAGACTTGAAGCTAAAATTGA  445

Query  593  TACCCATTCTACAGCACATGCACCATGATGCAATCTTGGCTTCCAGTGCTCGTCAGCTTTTACAACAGCTGGTC  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  446  TACCCATTCTACAGCACATGCACCATGATGCAATCTTGGCTTCCAGTGCTCGTCAGCTTTTACAACAGCTGGTC  519

Query  667  ACATCCTATCCGTCCACCAAAATGGTGATTGTGTCTTTGCACACTTTCACTCTGCTTGCAGCGTCATCTTTGGT  740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  520  ACATCCTATCCGTCCACCAAAATGGTGATTGTGTCTTTGCACACTTTCACTCTGCTTGCAGCGTCATCTTTGGT  593

Query  741  TGATACACCTAAGCAGATTCAGCTTCTGTTGCAGTATTTGAAGAATGATCCCAGGAAGGCAGTAAAGAGACTTG  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  594  TGATACACCTAAGCAGATTCAGCTTCTGTTGCAGTATTTGAAGAATGATCCCAGGAAGGCAGTAAAGAGACTTG  667

Query  815  CTATTCAAGATCTGAAATTACTTGCTAATAAAACACCACATACTTGGAGTAGGGAGAATATTCAGGCACTTTGT  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  668  CTATTCAAGATCTGAAATTACTTGCTAATAAAACACCACATACTTGGAGTAGGGAGAATATTCAGGCACTTTGT  741

Query  889  GAGTGTGCCCTCCAGACTCCTTATGACAGCTTAAAACTAGGGATGTTGTCTGTCCTTTCCACACTATCAGGGAC  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  742  GAGTGTGCCCTCCAGACTCCTTATGACAGCTTAAAACTAGGGATGTTGTCTGTCCTTTCCACACTATCAGGGAC  815

Query  963  CATCGCCATCAAACATTACTTCAGTATAGTTCCAGGAAATGTGAGTTCTTCTCCCAGATCTTCTGATTTAGTCA  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  816  CATCGCCATCAAACATTACTTCAGTATAGTTCCAGGAAATGTGAGTTCTTCTCCCAGATCTTCTGATTTAGTCA  889

Query 1037  AATTAGCCCAAGAGTGCTGTTACCATAATAACAGGGGCATTGCAGCTCATGGAGTTAGAGTCCTAACTAATATA  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  890  AATTAGCCCAAGAGTGCTGTTACCATAATAACAGGGGCATTGCAGCTCATGGAGTTAGAGTCCTAACTAATATA  963

Query 1111  ACTGTTTCTTGTCAAGAAAAGGATCTTTTGGCACTGGAACAAGATGCTGTCTTTGGCCTGGAATCCCTACTGGT  1184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  964  ACTGTTTCTTGTCAAGAAAAGGATCTTTTGGCACTGGAACAAGATGCTGTCTTTGGCCTGGAATCCCTACTGGT  1037

Query 1185  ACTTTGTAGTCAAGATGATAGTCCAGGTGCTCAGGCCACTTTAAAGATTGCTCTAAACTGTATGGTGAAGTTGG  1258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1038  ACTTTGTAGTCAAGATGATAGTCCAGGTGCTCAGGCCACTTTAAAGATTGCTCTAAACTGTATGGTGAAGTTGG  1111

Query 1259  CCAAGGGCAGGCCCCGTCTTAGCCAGTCAGTAGTTGAGACCTTGTTGACTCAATTGCACAGTGCTCAAGACGCT  1332
            |||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1112  CCAAGGGCAGGCCCCATCTTAGCCAGTCAGTAGTTGAGACCTTGTTGACTCAATTGCACAGTGCTCAAGACGCT  1185

Query 1333  GCCCGGATTTTGATGTGCCATTGCCTGGCAGCCATTGCCATGCAACTGCCGGTGCTGGGTGATGGGATGCTTGG  1406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186  GCCCGGATTTTGATGTGCCATTGCCTGGCAGCCATTGCCATGCAACTGCCGGTGCTGGGTGATGGGATGCTTGG  1259

Query 1407  TGACCTCATGGAGCTGTACAAGGTGATTGGACGATCAGCCACAGACAAGCAACAAGAACTTCTGGTGAGTTTGG  1480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260  TGACCTCATGGAGCTGTACAAGGTGATTGGACGATCAGCCACAGACAAGCAACAAGAACTTCTGGTGAGTTTGG  1333

Query 1481  CTACTGTGATTTTTGTTGCAAGTCAGAAGGCATTGTCTGTGGAAAGTAAGGCAGTAATTAAGCAGCAGCTTGAA  1554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1334  CTACTGTGATTTTTGTTGCAAGTCAGAAGGCATTGTCTGTGGAAAGTAAGGCAGTAATTAAGCAGCAGCTTGAA  1407

Query 1555  AGTGTCTCCAATGGATGGACTGTATACCGTATTGCCAGACAGGCTTCCAGAATGGGTAATCATGACATGGCCAA  1628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1408  AGTGTCTCCAATGGATGGACTGTATACCGTATTGCCAGACAGGCTTCCAGAATGGGTAATCATGACATGGCCAA  1481

Query 1629  AGAGCTTTATCAGAGTTTGCTGACTCAGGTTGCCTCAGAACATTTCTACTTCTGGCTAAATAGTTTGAAGGAGT  1702
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1482  AGAGCTTTATCAGAGTTTGCTGACTCAGGTTGCCTCAGAACATTTCTACTTCTGGCTAAATAGTTTGAAGGAGT  1555

Query 1703  TTTCACATGCAGAACAGTGTCTCACTGGGTTGCAAGAGGAAAATTATAGTTCAGCACTTTCTTGCATTGCTGAA  1776
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556  TTTCACATGCAGAACAGTGTCTCACTGGGTTGCAAGAGGAAAATTATAGTTCAGCACTTTCTTGCATTGCTGAA  1629

Query 1777  TCTTTAAAATTCTATCACAAAGGGATTGCTTCCTTAACAGCAGCTAGTACACCACTGAATCCTTTAAGCTTTCA  1850
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1630  TCTTTAAAATTCTATCACAAAGGGATTGCTTCCTTAACAGCAGCTAGTACACCACTGAATCCTTTAAGCTTTCA  1703

Query 1851  GTGTGAATTTGTAAAACTCAGGATTGACCTTTTACAAGCCTTCTCTCAACTTATCTGTACTTGTAATAGCCTGA  1924
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1704  GTGTGAATTTGTAAAACTCAGGATTGACCTTTTACAAGCCTTCTCTCAACTTATCTGTACTTGTAATAGCCTGA  1777

Query 1925  AGACAAGCCCACCACCTGCAATTGCCACAACAATTGCCATGACCTTAGGAAATGACCTCCAGAGGTGTGGTCGC  1998
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1778  AGACAAGCCCACCACCTGCAATTGCCACAACAATTGCCATGACCTTAGGAAATGACCTCCAGAGGTGTGGTCGC  1851

Query 1999  ATCTCCAATCAGATGAAACAGTCCATGGAAGAATTTCGAAGCCTTGCTTCTCGATATGGAGATCTTTACCAGGC  2072
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1852  ATCTCCAATCAGATGAAACAGTCCATGGAAGAATTTCGAAGCCTTGCTTCTCGATATGGAGATCTTTACCAGGC  1925

Query 2073  ATCTTTTGATGCTGACTCAGCAACTTTGAGGAATGTTGAACTACAGCAGCAGAGCTGTTTACTGATATCTCATG  2146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1926  ATCTTTTGATGCTGACTCAGCAACTTTGAGGAATGTTGAACTACAGCAGCAGAGCTGTTTACTGATATCTCATG  1999

Query 2147  CAATAGAAGCCCTGATTTTGGATCCAGAATCAGCAAGTTTCCAGGAATATGGATCTACTGGAACAGCCCATGCT  2220
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2000  CAATAGAAGCCCTGATTTTGGATCCAGAATCAGCAAGTTTCCAGGAATATGGATCTACTGGAACAGCCCATGCT  2073

Query 2221  GATAGTGAATATGAAAGAAGAATGATGTCTGTATATAATCATGTCTTGGAGGAGGTAGAATCACTCAATCGGAA  2294
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2074  GATAGTGAATATGAAAGAAGAATGATGTCTGTATATAATCATGTCTTGGAGGAGGTAGAATCACTCAATCGGAA  2147

Query 2295  ATATACCCCTGTTTCTTATATGCACACAGCATGCCTCTGCAATGCCATCATTGCTTTGCTGAAAGTTCCCCTTT  2368
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2148  ATATACCCCTGTTTCTTATATGCACACAGCATGCCTCTGCAATGCCATCATTGCTTTGCTGAAAGTTCCCCTTT  2221

Query 2369  CTTTCCAGAGATATTTTTTCCAGAAACTACAGTCTACCAGCATCAAGCTTGCTCTGTCACCATCGCCCCGGAAT  2442
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2222  CTTTCCAGAGATATTTTTTCCAGAAACTACAGTCTACCAGCATCAAGCTTGCTCTGTCACCATCGCCCCGGAAT  2295

Query 2443  CCTGCAGAGCCCATTGCTGTCCAGAATAACCAGCAGCTGGCGCTAAAGGTAGAGGGAGTGGTTCAGCACGGATC  2516
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2296  CCTGCAGAGCCCATTGCTGTCCAGAATAACCAGCAGCTGGCGCTAAAGGTAGAGGGAGTGGTTCAGCACGGATC  2369

Query 2517  TAAACCAGGACTCTTCCGCAAAATTCAGTCTGTCTGTCTGAATGTTTCTTCCACACTGCAGAGTAAATCTGGAC  2590
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2370  TAAACCAGGACTCTTCCGCAAAATTCAGTCTGTCTGTCTGAATGTTTCTTCCACACTGCAGAGTAAATCTGGAC  2443

Query 2591  AAGACTACAAGATACCCATTGACAACATGACCAATGAGATGGAGCAAAGGGTTGAACCTCATAATGATTACTTC  2664
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2444  AAGACTACAAGATACCCATTGACAACATGACCAATGAGATGGAGCAAAGGGTTGAACCTCATAATGATTACTTC  2517

Query 2665  AGTACTCAATTTCTGTTGAACTTTGCTATCCTTGGAACACACAACATTACAGTGGAATCTTCTGTGAAAGATGC  2738
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2518  AGTACTCAATTTCTGTTGAACTTTGCTATCCTTGGAACACACAACATTACAGTGGAATCTTCTGTGAAAGATGC  2591

Query 2739  CAATGGTATAGTATGGAAGACTGGTCCCAGAACTACCATATTTGTAAAATCCCTGGAAGACCCTTATTCCCAGC  2812
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2592  CAATGGTATAGTATGGAAGACTGGTCCCAGAACTACCATATTTGTAAAATCCCTGGAAGACCCTTATTCCCAGC  2665

Query 2813  AAATTCGCTTACAACAGCAGCAAGCCCAGCAGCCATTACAGCAGCAGCAGCAACGCAATGCCTACACACGGTTT  2886
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2666  AAATTCGCTTACAACAGCAGCAAGCCCAGCAGCCATTACAGCAGCAGCAGCAACGCAATGCCTACACACGGTTT  2739

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