Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_09069
- Subject:
- XM_017317781.1
- Aligned Length:
- 3584
- Identities:
- 1863
- Gaps:
- 1489
Alignment
Query 1 ATGGGGCCACGAAAGAAAAGTGTGAAAACATGTATCATGAATAATGAAATTCCAGAAGAAATGACAGCAGATGA 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 AACAAAGGACTATATGAATCAACTTTCACATGAAGTACTTTGCCATATTTTTAGGTACCTCCCTCTGCAGGATA 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 TCATGTGTATGGAATGTCTTTCCCGGAAGCTAAAGGAAGCAGTGACCCTATATCTGCGAGTTGTGAGAGTTGTA 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 GATCTCTGTGCAGGGCGGTGGTGGGAATACATGCCAAGTGGCTTTACAGATGCCAGTTTTCTAACACTATTAAA 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 GAAGATGCCAGATGTTGAACAGCTATATGGCCTTCACCCTCGATACCTTGAGAGGCGAAGAGTAAGGGGCCATG 370
Sbjct 1 -------------------------------------------------------------------------- 0
Query 371 AGGCTTTTAGCATTCCAGGAGTCCTAGAAGCTTTGCAGTCATGCCCAAACTTAGTGGGTGTGGAAACTTCTCAT 444
Sbjct 1 -------------------------------------------------------------------------- 0
Query 445 TTGGAGTTGGTAGAATCCATTTGGACATATATGCCCCATGTTCATATTTTGGGGAAATTTCGTAATCGTAATGG 518
Sbjct 1 -------------------------------------------------------------------------- 0
Query 519 AGCTTTTCCAATTCCTCCTGAAAATAAACTGAAAATTCCTATAGGAGCCAAAATTCAAACTTTACATTTAGTTG 592
Sbjct 1 -------------------------------------------------------------------------- 0
Query 593 GGGTGAATGTTCCTGAAATTCCTTGTATCCCAATGCTAAGGCACCTTTATATGAAGTGGGTAAGACTCACTAAA 666
Sbjct 1 -------------------------------------------------------------------------- 0
Query 667 CCACAGCCATTTAAAGACTTCCTTTGTATCAGCTTAAGAACTTTCGTCATGAGGAACTGTGCAGGACCCACAAA 740
Sbjct 1 -------------------------------------------------------------------------- 0
Query 741 TTCCTTGAAATATGTCCCTTTAGTAACAGGCTTAGCCTCTGCCCGAAACTTGGAACACTTAGAAATGGTTCGAG 814
Sbjct 1 -------------------------------------------------------------------------- 0
Query 815 TTCCTTTCCTTGGAGGTCTTATCCAACATGTTGTTGAAGACAGTTGGAGATCAGGTGGTTTTAGAAATTTGCAC 888
Sbjct 1 -------------------------------------------------------------------------- 0
Query 889 ACTATTGTTCTGGGAGCTTGCAAAAATGCTCTTGAAGTAGATCTTGGTTACCTCATCATTACTGCTGCCCGTAG 962
Sbjct 1 -------------------------------------------------------------------------- 0
Query 963 GTTACATGAAGTTCGGATCCAGCCTTCCCTAACCAAAGATGGTGTCTTTTCTGCCCTAAAGATGGCAGAGTTGG 1036
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1037 AGTTTCCCCAGTTTGAAACCCTTCATCTAGGATATGTAGATGAGTTTTTGCTACAGAGCAGAATGGCTAATGCG 1110
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1111 GATCTGGTGAAGTATGGTTTGGCTGATGTGGTAGAAAATCCTGGTATCATCACTGATATAGGGATGAAAGCAGT 1184
|||||||
Sbjct 1 ---------------------------------------------------------------ATGAAAG---- 7
Query 1185 CAATGAAGTTTTTTCCTGTATCAAATATCTGGCAATTTACAATTGCCCTCATCTACACAACCCATACAATTGGA 1258
||| ||||.||| ||
Sbjct 8 ---------------------------TCT----------------CCTCTTCT-CA----------------- 20
Query 1259 TCTCAGACCACTCAAGATGGACTCGATTGGTTGATATCAACCTAGTACGGTGCCATGCTTTGAAGCTGGACTCT 1332
|||||||||.||.||||..|||.||||||||||||||||.||.|||||||||||||||||||||||.|||
Sbjct 21 ----AGACCACTCGAGGTGGATGCGACTGGTTGATATCAACCTCGTGCGGTGCCATGCTTTGAAGCTGGATTCT 90
Query 1333 TTTGGCCAGTTTATTGAATTATTACCCAGCCTAGAGTTTATTTCACTGGATCAGATGTTTCGTGAACCACCCAA 1406
||||||||||||.||||||||||.||||||||.||.||||||||.|||||.||||||||.|||||.||||||||
Sbjct 91 TTTGGCCAGTTTGTTGAATTATTGCCCAGCCTGGAATTTATTTCTCTGGACCAGATGTTCCGTGAGCCACCCAA 164
Query 1407 GGGTTGTGCTCGAGTTGGTCTGAGTGCAGGCACAGGAATTGGTGTTTCATCAGCTCTTGTTAGCAACCAGAACT 1480
|||.||||||||||||||||||||||||||.||.||||||||.|||||.|||||.|||||.|||||||||||.|
Sbjct 165 GGGCTGTGCTCGAGTTGGTCTGAGTGCAGGAACTGGAATTGGGGTTTCCTCAGCGCTTGTCAGCAACCAGAATT 238
Query 1481 CCAACAATGAC---GATAATAATGC-CCAGAATAACAATGCCAACATCCACGACAACAATCACCATCATCCAGA 1550
||||||||||| ||.|||||||| ||| ||||||||.||||||.||||.||.||||||||||||||.|||||
Sbjct 239 CCAACAATGACAATGACAATAATGCTCCA-AATAACAACGCCAACCTCCATGATAACAATCACCATCACCCAGA 311
Query 1551 TGACTCAGACGAGGAGAATGACTTTCGGCAAGATCTGCAGCCAGGAGA-GCAGCAGTTTGCAGCTGACGCATTA 1623
|||.||.||.||.||.|||||||||||.|.|||.||.||..||||||| ||| ||.||||||||.||.||.||.
Sbjct 312 TGATTCGGATGACGACAATGACTTTCGTCCAGACCTACAAGCAGGAGAGGCA-CAATTTGCAGCCGATGCGTTG 384
Query 1624 AATGAGATGGAAGACATCGTCCAAGAAGATGGAGAGGTGGTGGCCGAGAGTGGAAATAATACTCCAGCTCACAG 1697
|||||||||||||||||.|||||.|||||||||||..||||.|||||||||||||||..||..||||||||||.
Sbjct 385 AATGAGATGGAAGACATGGTCCAGGAAGATGGAGAACTGGTAGCCGAGAGTGGAAATGGTATGCCAGCTCACAA 458
Query 1698 CCAGGCAATTATTCCTGTGGATGTTGATGAGGAACAAGCAGGACCCAGTGGTCTTCAGCGTGTAGTAAAACCAA 1771
.|.||.|.||.||||||||||||.|||||||||||||||||||||.||||||||.||.||.||.||||||||.|
Sbjct 459 TCGGGAAGTTCTTCCTGTGGATGCTGATGAGGAACAAGCAGGACCTAGTGGTCTACAACGCGTGGTAAAACCTA 532
Query 1772 CCTCAATTACTGTTCATGATTCAGAGAGTGATGATGAAGAAGATAGTCTAGAACTCCAAGAAGTCTGGATTCCT 1845
|..|||||.|||.|||.|||||||||||.||||||||||||||||||.||||||||||||||||||||..||||
Sbjct 533 CACCAATTGCTGATCACGATTCAGAGAGCGATGATGAAGAAGATAGTTTAGAACTCCAAGAAGTCTGGGCTCCT 606
Query 1846 AAGAACGGTACTCGGCGTTACTCTGAACGTGAAGAAAAAACTGGAGAGTCAGTGCAGTCCAGAGAATTGTCAGT 1919
|||||.||.||.|||||||||||.||.||.||||||||.||||||||.||||..||||||||.|||..|.||||
Sbjct 607 AAGAATGGCACCCGGCGTTACTCAGAGCGGGAAGAAAAGACTGGAGACTCAGGACAGTCCAGGGAAACGGCAGT 680
Query 1920 AAGTGGAAAAGGCAAGACTCCACTTCGAAAGAGGT---ACAACTCCCATCAGATGGGCCAGTCGAAGCAGTTTC 1990
||||||.|||||||||||||||||||||||||||| ||||||||||.||||.|||||||.||||||.|||||
Sbjct 681 AAGTGGGAAAGGCAAGACTCCACTTCGAAAGAGGTGCAACAACTCCCACCAGACGGGCCAGGCGAAGCCGTTTC 754
Query 1991 CCCTCGAGGAAAGCAGCTGTGAGAAAGGCTGTCAGGTCACCAGTGAGCAGATCAAAGCCGATATGAAAGCAGCT 2064
||||.|||||.||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||
Sbjct 755 CCCTGGAGGAGAGCAGCTGTGAGAAAGGCTGTCAGGTGACCAGTGAGCAGATCAAAGCCGATATGAAAGCAGCT 828
Query 2065 AGGGATATTCCTGAAAAGAAAAAAAACAAGGATGTTTATCCCAGCTGCAGCAGCACCA------------CCGC 2126
||||||.||.||||||||||||||..|||||||||.|||||||||||||||||||.|| ||||
Sbjct 829 AGGGATGTTTCTGAAAAGAAAAAATCCAAGGATGTCTATCCCAGCTGCAGCAGCAGCAGCAGCAGCACAGCCGC 902
Query 2127 CAGCACAGTGGGAAACTCCAGCTCACACAACACTGCTTCTCAAAGCCCCGACTTTGTAAGGACGGTGAACAGCG 2200
||||||||.|||||||.|||||||||.||.|||||||||.||.|||||.|||||||.|||||||||||.||||.
Sbjct 903 CAGCACAGCGGGAAACGCCAGCTCACCCAGCACTGCTTCCCAGAGCCCGGACTTTGCAAGGACGGTGACCAGCA 976
Query 2201 GCGGCTCTTCCGAGCCTAGCCCTACAGAAGTGGATGTGTCCAGGCAGTGTGCCTGCTCCCCCGGTGGGTCAGAG 2274
||||||||||||||||.||||||.|||||||.|||||.|||||||||||||.|||||||||.||||||||||||
Sbjct 977 GCGGCTCTTCCGAGCCGAGCCCTCCAGAAGTAGATGTATCCAGGCAGTGTGTCTGCTCCCCTGGTGGGTCAGAG 1050
Query 2275 GACTCTGAGGCCATGGAGGAGGGAGATGCAGAGAGTTCTGTCTGCCCCAGATGCTGCTGTCACAGGCCCCAGGA 2348
|||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||.||||||||||||
Sbjct 1051 GACTCTGAGGCCATGGAGGAGGGAGATGCAGAGAGCTCTGTCTGCCCCAGATGCTGCTGTCTCAGGCCCCAGGA 1124
Query 2349 ATCCCAAAGGAGAACTAGCAGGTGTTCTGATGAGGAACGTCCTTCAACCAGCCGAGCCTGTGTTGTGAATGGCC 2422
.||.||||||||||||.|||||||||||||||||||.||||||||||||||||||||||||||||||||||||.
Sbjct 1125 GTCTCAAAGGAGAACTGGCAGGTGTTCTGATGAGGAGCGTCCTTCAACCAGCCGAGCCTGTGTTGTGAATGGCG 1198
Query 2423 CGGAT--------------------------------------------------------------------- 2427
|||||
Sbjct 1199 CGGATGGTACGAGATCCGCCTTTTCCTTTAGGACTCTGCCACAAGGGGGGTCTTCAGGCCCAGCACATGATGAG 1272
Query 2428 -------------------------------------------------------------------------- 2427
Sbjct 1273 AGGACTAATGGGAGTGGCTGTGGGGCTACAGGTGAGGACAGGAGGGGGAGCTCCCAGCCTGAGAGTTGTGACGT 1346
Query 2428 -------------------------------------------------------------------------- 2427
Sbjct 1347 GCAGTCTAATGAAGACTATCCTCGGAGGCCCCTAACCAGGGCCAGGAGCAGACTGTCCCATGTACCGCTGATAT 1420
Query 2428 --------GAAGTAGCCAAAACAAAGCCACGTCACGCCATGAAACGGAAGCGGACAGCAGATAAATCCACTAGT 2493
|||||.|||||||||||||||.|.||.|||||||||||.|||||.||.||||||||.||.||.||.
Sbjct 1421 CTGAGTCAGAAGTTGCCAAAACAAAGCCATGCCATGCCATGAAACGAAAGCGAACTGCAGATAAGTCTACCAGC 1494
Query 2494 ACAAGTGATCCTGTGATCGAGGATGACCATGTGCAGGTTCTTGTATTAAAATCCAAGAATCTTGTTGGAGTCAC 2567
||.|||||.||||||||.||.||||||||.||.|||||||||||||||||||||||.|||||||||||||||||
Sbjct 1495 ACCAGTGACCCTGTGATTGAAGATGACCACGTACAGGTTCTTGTATTAAAATCCAAAAATCTTGTTGGAGTCAC 1568
Query 2568 TATGACCAATTGTGGAATCACAGATCTAGTGCTAAAAGACTGTCCAAAGATGATGTTCATCCATGCTACCAGGT 2641
.|||||||||||||||||||||||||||||.||.||||||||.||.||||||||||||||||||||||||||||
Sbjct 1569 AATGACCAATTGTGGAATCACAGATCTAGTACTGAAAGACTGCCCCAAGATGATGTTCATCCATGCTACCAGGT 1642
Query 2642 GCAGGGTACTAAAACATTTAAAGGTAGAAAATGCACCAATTGTAAACCGATTTGACTATGCACAGTGCAAGAAA 2715
||||||||||.||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1643 GCAGGGTACTGAAGCATTTAAAGGTAGAAAATGCACCAATTGTAAACCGATTTGACTATGCACAGTGCAAGAAA 1716
Query 2716 CTGAACATGGATCAGGTACTAGACCAGATACTAAGAATGCCACCCGAGAGAAACCGCATCATATACCTACGCCC 2789
||.||.|||||.||||||||||||||.|||||.||.|||||.||.|||||.|||||.|||||.|||||.|||||
Sbjct 1717 CTAAATATGGACCAGGTACTAGACCAAATACTGAGGATGCCTCCGGAGAGGAACCGGATCATCTACCTGCGCCC 1790
Query 2790 AATGCAGCAGGTGGACACTCTAACTTTGGAGCAGAAGCTATTTAGTGGTCCCTACCCCTATCACATCTGTATTA 2863
||||||||||||.|||||.||||||.|||||||||||||.||.||.||.||||||||||||||||||||.||.|
Sbjct 1791 AATGCAGCAGGTAGACACACTAACTCTGGAGCAGAAGCTCTTCAGCGGGCCCTACCCCTATCACATCTGCATCA 1864
Query 2864 TCCATGAATTCAGTAACCCTCCCAATGTCCGGAATAAGGTGCGCATTCGCAGCTGGATGGACACTATAGCAAAC 2937
||||.||.|||||.||.||||||||.||.|||||.|||||||||||.||||..|||||||||||.|||||.|||
Sbjct 1865 TCCACGAGTTCAGCAATCCTCCCAACGTGCGGAACAAGGTGCGCATCCGCAATTGGATGGACACGATAGCCAAC 1938
Query 2938 ATCAATCAAGAGCTCATTAAATATGAATTCTTCCCTGAAGCCACTCGAAGTGAAGAAGACTTAAAGAAATACCC 3011
|||||||||||||||||||||||.||||||||||..|||||||||||.|.||||||.||.||||||||.|||||
Sbjct 1939 ATCAATCAAGAGCTCATTAAATACGAATTCTTCCTGGAAGCCACTCGGACTGAAGAGGATTTAAAGAAGTACCC 2012
Query 3012 CAAGTACCCCTGGGGGAGAGAAATCTATACTTTAGAAGGTGTTGTGGATGGAGCTCCATATTCCATGATTTCTG 3085
.|||||.||||||||||||||||||||.||||||||.||||||||.||||||||.||.||||||||||||||.|
Sbjct 2013 TAAGTATCCCTGGGGGAGAGAAATCTACACTTTAGAGGGTGTTGTAGATGGAGCGCCGTATTCCATGATTTCCG 2086
Query 3086 ACTTCCCTTGGCTGAGGTCATTACGAGCTGCAGAGCCCAACAGCTTCGCTCGATACGACTTTGAAGACGATGAA 3159
||||||||||||||||||||.|.||..|.|||||||||||||||||.||..||||.||.||||||||.||||||
Sbjct 2087 ACTTCCCTTGGCTGAGGTCACTGCGGACCGCAGAGCCCAACAGCTTTGCCAGATATGATTTTGAAGATGATGAA 2160
Query 3160 GAAAGCACTATCTATGCTCCTAGAAGGAAAGGACAGCTGTCTGCAGACATCTGTATGGAAACAATAGGAGAGGA 3233
||.|||||.||||||||||||.||||.|||||.|||.|||||||||||||.||||||||.||||||||||||||
Sbjct 2161 GAGAGCACCATCTATGCTCCTCGAAGAAAAGGGCAGTTGTCTGCAGACATTTGTATGGAGACAATAGGAGAGGA 2234
Query 3234 AATTTCAGAGATGCGTCAGATGAAGAAGGGTGTATTTCAGCGAGTAGTGGCAATTTTTATCCACTATTGTGATG 3307
.||.|||||||||||.||||||||||.|||..||||||||||||||||.||.||||||||||||||.|||||||
Sbjct 2235 GATCTCAGAGATGCGCCAGATGAAGAGGGGCATATTTCAGCGAGTAGTAGCGATTTTTATCCACTACTGTGATG 2308
Query 3308 TCAATGGAGAGCCAGTTGAAGATGACTACATT 3339
||||||||||||||||||||||.|||||||||
Sbjct 2309 TCAATGGAGAGCCAGTTGAAGACGACTACATT 2340
